KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:12:04 2014 Check: 00 .. Name: ENSP00000347942/1-1114 Len: 1150 Check: 8917 Weight: 1.00 Name: ENSBTAP00000000744/1-1113 Len: 1150 Check: 2253 Weight: 1.00 Name: ENSTTRP00000001522/1-1113 Len: 1150 Check: 3639 Weight: 1.00 Name: bmy_07937T0/1-776 Len: 1150 Check: 3368 Weight: 1.00 Name: BACU003399/1-1046 Len: 1150 Check: 6252 Weight: 1.00 // 1 50 ENSP00000347942/1-1114 MAKATSGAAG LRLLLLL--- ---------- --LLPLLGKV ALGLYFSRDA ENSBTAP00000000744/1-1113 MAKATASTVG LRLLLLL--- ---------- ---LPLLGEA PLGLYFSRDA ENSTTRP00000001522/1-1113 MEKATAGTVG LRLLLLL--- ---------- ----PLLGEA PLGLYFSRDA bmy_07937T0/1-776 ---------- ---------- ---------- ---------- ---------- BACU003399/1-1046 -EIKPLGNTG LPRRPALGSV ITVITPPSLP PSCASLLPAA PLGLYFSRDA 51 100 ENSP00000347942/1-1114 YWEKLYVDQA AGTPLLYVHA LRDAPEEVPS FRLGQHLYGT YRTRLHENNW ENSBTAP00000000744/1-1113 YWEKLYVDQP AGTPLLYVHA LRDVPEEVPS FRLGQHLYGA YRTRLHENDW ENSTTRP00000001522/1-1113 YWERLYVDQP AGMPLLYVHA LQDVPEEVPS FRLGQHLYGA YRTRLHENDW bmy_07937T0/1-776 ---------- --MPLLYVHA LQDVPEEVPS FRLGQHLYGA YRTRLHENDW BACU003399/1-1046 YWEKLYVDQP AGMPLLYVHA LQDVPEEVPS FRLGQHLYGA YRTRLHENDW 101 150 ENSP00000347942/1-1114 ICIQEDTGLL YLNRSLDHSS WEKLSVRNRG FPLLTVYLKV FLSPTSLREG ENSBTAP00000000744/1-1113 VRIQEDTGLL YLNQSLDHSS WEKLNIRNGG FPLLTVYLWV FLSPASVREG ENSTTRP00000001522/1-1113 VRIQEDTGLL YLNRSLDHSS WEKLSIRNGG FPLLTVYLQV FLSPASLREG bmy_07937T0/1-776 VRIQEDTGLL YLNRSLDHSS WEKLSIRNGG FPLLTVYLQV FLSPASLREG BACU003399/1-1046 VRIQEDTGLL YLNRSLDHSS WEKLSIRNGG FPLLTVYLQV FLSPVSLRQG 151 200 ENSP00000347942/1-1114 ECQWPGCARV YFSFFNTSFP ACSSLKPREL CFPETRPSFR IRENRPPGTF ENSBTAP00000000744/1-1113 ECQWPGCARV YFSVINASFP ACGALKAREL CFPESGLSFR IRENRPPGTF ENSTTRP00000001522/1-1113 ECQWPGCARV YFSIINASFP ACGALKPRDL CFPEMGLSFR IRENRPPGTF bmy_07937T0/1-776 ECQWPGCARV YFSIINASFP ACGALKPREL CFPETGLSFR IRENRPPGTF BACU003399/1-1046 ECQWPGCARV YFSLINASFP ACGALKPREL CFPETGLSFR IRENRPPGTF 201 250 ENSP00000347942/1-1114 HQFRLLPVQF LCPNISVAYR LLEGEGLPFR CAPDSLEVST RWALDREQRE ENSBTAP00000000744/1-1113 HQFRLLPVQF LCPNVSVAYR LLGGESLPFR CDPDSLEVST RWALDREQRE ENSTTRP00000001522/1-1113 HQFRLLPVQF LCPNVSAAYR LLGGESLPFR CTVDSLEVST RWALDREKRE bmy_07937T0/1-776 HQFRLLPVQF LCPNVSVAYR LLGGEGLPFR CAVDSLEVST RRALDREQRE BACU003399/1-1046 HQFRLLPVQF LCPNVSVAYR LLGGEGLPFR CAVDSLEVST RWALDREQRE 251 300 ENSP00000347942/1-1114 KYELVAVCTV HAGAREEVVM VPFPVTVYDE DDSAPTFPAG VDTASAVVEF ENSBTAP00000000744/1-1113 KYELVAACTV RVGAREEEVM VPFPVTVYDE DDSAPTFLGG VDSASAVVEF ENSTTRP00000001522/1-1113 KYELVAACTV RVGTREEEVM VPFPVTVYDE DDSAPSFLGG VDTASAVVEF bmy_07937T0/1-776 KYELVATCAV RVGAREEEVM VPFPVTVYDE DDSAPSFLGG VDTASAVVEF BACU003399/1-1046 KYELVAVCAV RVGAREEEVM VPFPVTVYDE DDSAPSFLGG VDTASAVVEF 301 350 ENSP00000347942/1-1114 KRKEDTVVAT LRVFDADVVP ASGELVRRYT STLLPGDTWA QQTFRVEHWP ENSBTAP00000000744/1-1113 KRKEGTVVAT LRVFDADVVP ASGELLRRYT NTLLSGDPKA LRTFRVEHAP ENSTTRP00000001522/1-1113 KRKEGTVVAT LRVFDADVVP ASGELLRRYT STLLSGDAWA LQTFRVEHSP bmy_07937T0/1-776 KRKEGTVVAT LRVFDADVVP ASGELLRRYT STLLSGDAWA LQTFRVEHSP BACU003399/1-1046 KRKEGTVAAT LRVFDADVVP APGELLRRYT STLLSGDAWA LQTFRVEHSP 351 400 ENSP00000347942/1-1114 NETSVQANGS FVRATVHDYR LVLNRNLSIS ENRTMQLAVL VNDSDFQGPG ENSBTAP00000000744/1-1113 NETLAQANGS FVRATVHDYK LVLNRSLPIS ESWAVQLAVL VNDSDFQGPG ENSTTRP00000001522/1-1113 NETLAQANGS FVRATVHDYR LVLNRSLPIS ESRAVQLAVL VNDSDFQGPG bmy_07937T0/1-776 NETLAQANGS FVRATVHDYR LVLNRSLPIS ESRAMQLAVL VNDSDFQGPG BACU003399/1-1046 NETLAQANGS FVRATVHDYR LVLNRSLPIS ESRAVQLAVL VNDSDFQGPG 401 450 ENSP00000347942/1-1114 AGVLLLHFNV SVLPVSLHLP STYSLSVSRR ARRFAQI--- ---------- ENSBTAP00000000744/1-1113 EGVVLLHFNV SVLPVSLRLP SAYSFSVSRR AHRFAQI--- ---------- ENSTTRP00000001522/1-1113 EGVILLHFNV SVLPVSLRLP STYSFAASRR ARRFAQI--- ---------- bmy_07937T0/1-776 EGILLLHFNV SVLPVSLRLP STYSFAASRR ARRFAQVSPQ PAACLGWGLE BACU003399/1-1046 EGILLLHFNV SVLPVSLRLP STYSFAASRR ARRFAQI--- ---------- 451 500 ENSP00000347942/1-1114 -------GKV CVENCQAFSG INVQYKLHSS GANCSTLGVV TSAEDTSGIL ENSBTAP00000000744/1-1113 -------GKV CVENCQEFSG IQVQYRLQPS SANCSALGMV TSAEDTSGTL ENSTTRP00000001522/1-1113 -------GKV CVENCQEFSG IHVQYKLQLS SANCSALGVV TSAEDTTGTL bmy_07937T0/1-776 GQETPRIGKV CVENCQEFSG IHVQYKLQLS SANCSALGMV TSAEDTTGTL BACU003399/1-1046 -------GKV CVENCQEFSG IHVQYKLQLS SANCSALGMV TSAEDTMGTL 501 550 ENSP00000347942/1-1114 FVNDTKALRR PKCAELHYMV VATDQQTSRQ AQAQLLVTVE GSYVAEEAGC ENSBTAP00000000744/1-1113 FVNDMEALQR PECAQLQYTV VAAEKPTRQQ AQAPLLVSVE GIYVPEEPGC ENSTTRP00000001522/1-1113 FVNDTEALQR PECAQLQYTV VAVERPTRRQ AQAPLLVTLE GTYVAEEPGC bmy_07937T0/1-776 FVNDTEALQR PECAQLQYTV VAVERPTRRQ AQAPLVVTLE GTYVAEEPGC BACU003399/1-1046 FVNDTEALQR PECAQLQYTV VAVERPTRRQ AQAPLLVTLE GTYVAEEAGC 551 600 ENSP00000347942/1-1114 PLSCAVSKRR LECEECGGLG SPTGRCEWRQ GDGKGITRNF STCSPSTKTC ENSBTAP00000000744/1-1113 PLSCAVSKRR PECEECGGLG SLTGRCEWRQ GDGKGITRNF STCSPSIRTC ENSTTRP00000001522/1-1113 PLSCAVSKRR PECEECGGLG SLTGRCEWRQ GDGKGITRNF STCSPSIKTC bmy_07937T0/1-776 PLSCAVSKRR PECEECGGLG SLTGRCEWRQ GDGKGITRNF STCSPSIKTC BACU003399/1-1046 PVSCAVNKRR PECEECGGLG SLTGRCEWRQ GDGKGITRNF STCSPSIKTC 601 650 ENSP00000347942/1-1114 PDGHCDVVET QDINICPQDC LR-GSIVGGH EPGEPRGIKA GYGTCNCFPE ENSBTAP00000000744/1-1113 PDGHCDAVES RDPNICPQDC LRGGSIIGGH EPGERRGIKA GFGICNCFPE ENSTTRP00000001522/1-1113 PDGHCDAVES RDANICPQDC LRGGSIIGGH EPGERRGIKA GFGICNCFPE bmy_07937T0/1-776 PDGHCDAVES RDANICPQDC LR-------- ---------- ---------- BACU003399/1-1046 PDGHCDAVES RDANICPQDC L--------- ---------- ---------- 651 700 ENSP00000347942/1-1114 EEKCFCEPED IQDPLCDELC RTVIAAAVLF SFIVSVLLSA FCIHCYHKFA ENSBTAP00000000744/1-1113 EKKCFCEPED SQDSLCDELC RTVITAAVLF SFIVSVLLST FCIHRYHKNA ENSTTRP00000001522/1-1113 EKKCFCEPED SQDPLCDELC RTVIAAAVLF SFIVSVLLST FCIHRYHKNA bmy_07937T0/1-776 ---------- -KHRACT-WG GSIIGG---- ---------- ------HEPG BACU003399/1-1046 ---------- --HPLCDELC RTVIAAAVLF SFIVSVLLST FCIHRYHKNA 701 750 ENSP00000347942/1-1114 HKPPISSAEM TFRRPAQAFP VSYSSSGARR PSLDSMENQV SVDAFKILED ENSBTAP00000000744/1-1113 HKPPIASAEM TFRRPAQAFP VSYSSSGARR PSLDSMENQV SVDTFKIPED ENSTTRP00000001522/1-1113 HKPPIASAEM TFRRPAQAFP VSYSSSSARR PSLDSVENQV SVDTFKIPED bmy_07937T0/1-776 ERRGIKA--- -------GFG ICNCFPEEKK C--------- ----FCEPED BACU003399/1-1046 HKPPIASAEM TFRRPAQAFP VSYSSSGARR PSLDSVENQV SVDAFKIPED 751 800 ENSP00000347942/1-1114 PKWEFPRKNL VLGKTLGEGE FGKVVKATAF HLKGRAGYTT VAVKMLKENA ENSBTAP00000000744/1-1113 PKWEFPRKNL VLGKTLGEGE FGKVVKATAF RLKGKAGYTT VAVKMLKENA ENSTTRP00000001522/1-1113 PKWEFPRKNL VLGKTLGEGE FGKVVKATAF RLKGKAGYTT VAVKMLKENA bmy_07937T0/1-776 S--------- ---------- ---------- ---------- ------QENA BACU003399/1-1046 PKWEFPRKNL VLGKTLGEGE FGKVVKATAF RLKGKAGYTT VAVKMLKENA 801 850 ENSP00000347942/1-1114 SPSELRDLLS EFNVLKQVNH PHVIKLYGAC SQDGPLLLIV EYAKYGSLRG ENSBTAP00000000744/1-1113 SPSELRDLLS EFNLLKQVNH PQVIKLYGAC SQDGPLLLIV EYAKYGSLRG ENSTTRP00000001522/1-1113 SASELRDLLS EFNLLTQVSH PQVIKLYGAC SQDGPLLLIV EYAKYGSLRG bmy_07937T0/1-776 SASELRDLLS EFNLLTQVSH PQVIKLYGAC SQDAPLLQP- ---------- BACU003399/1-1046 SASELRDLLS EFNLLTQVSH PQVIKLYGAC SQDGPLLLIV EYAKYGSLRG 851 900 ENSP00000347942/1-1114 FLRESRKVGP GYLGSGGSRN SSSLDHPDER ALTMGDLISF AWQISQGMQY ENSBTAP00000000744/1-1113 FLRESRKAGP GYVGSGGSRN SSYLDNPEER ALTMGDLISF AWQISRGMQY ENSTTRP00000001522/1-1113 FLRESRKAGP GYVGSRDSRN SSYLDNPEER ALTMGDLISF AWQISRGMQY bmy_07937T0/1-776 ---------- ---------- ------PCDR ---------- ---------- BACU003399/1-1046 FLRESRKAGP GYVGSRDSRN SSYLDNPEER ALTMGDLISF AWQISRGMQY 901 950 ENSP00000347942/1-1114 LAEMKLVHRD LAARNILVAE GRKMKISDFG LSRDVYEEDS YVKRSQGRIP ENSBTAP00000000744/1-1113 LAEMKLVHRD LAARNVLVAE GRRMKIS-FG LSRDVYEEDS YVKRSKGRIP ENSTTRP00000001522/1-1113 LAEMKLVHRD LAARNVLVAE GRRMKISDFG LSRDVYEEDS YVKRSKGRIP bmy_07937T0/1-776 ---------- ---------- ---------- LDRA------ ---SSQGRIP BACU003399/1-1046 LAEMKLVHRD LAARNVLVAE GRRMKISDFG LSRDVYEEDS YVKRSKGRIP 951 1000 ENSP00000347942/1-1114 VKWMAIESLF DHIYTTQSDV WSFGVLLWEI VTLGGNPYPG IPPERLFNLL ENSBTAP00000000744/1-1113 VKWMAIESLF DHIYTTQSDV WSFGVLLWEI VTLGGNPYPG IPPERLFNLL ENSTTRP00000001522/1-1113 VKWMAIESLF DHIYTTQSDV WSFGVLLWEI VTLGGNPYPG IPPERLFNLL bmy_07937T0/1-776 VKWMAIESLF DHIYTTQSDV ---------- ---------- ---------- BACU003399/1-1046 VKWMAIESLF DHIYTTQSDV WSFGVLLWEI VTLGGNPYPG IPPERLFNLL 1001 1050 ENSP00000347942/1-1114 KTGHRMERPD NCSEEMYRLM LQCWKQEPDK RPVFADISKD LEKMMVKRRD ENSBTAP00000000744/1-1113 KTGYRMERPD NCSEEMYNLM LQCWKQEPDK RPVFADISKD LDKMMVKSRD ENSTTRP00000001522/1-1113 KTGYRMERPD NCSEEMYSLM LQCWKEEPDK RPVFADISKD LDKMMVKSRD bmy_07937T0/1-776 ---------- ------YSLM LQCWKEEPDK RPVFADISKD LDKMMVKSRD BACU003399/1-1046 KTGYRMERPD NCSEEMYSLM LQCWKEEPDK RPVFADISKD LDKMMVKSRD 1051 1100 ENSP00000347942/1-1114 YLDLAASTPS DSLIYDDGLS EEETPLVDCN NAPLPRALPS TWIENKLYGM ENSBTAP00000000744/1-1113 YLDLAASTPS DSLLYDDGLS EEETPLVDCN NAPLPRTLPS TWIENKLYGM ENSTTRP00000001522/1-1113 YLDLAASTPS DSLLYDDGLS EEEMPLVDCN NAPLPRTLPS TWIENKLYGM bmy_07937T0/1-776 YLDLAASTPS DSLLYDDGLS EEEMPLVDCN NAPLPRTLPS TWIENKLYGR BACU003399/1-1046 YLDLAASTPS DSLLYDDGLS EEEMPLVDCN NAPLPRTLPS TWIENKLYGR 1101 1150 ENSP00000347942/1-1114 SDPNWPGESP VPLTRADGTN TGFPRYPNDS VYANWMLSPS AAKLMDTFDS ENSBTAP00000000744/1-1113 SDPNWPEESP VPLTRAAGTN IGCPRYANDS VYANWMVSPS AAQLMDAFDS ENSTTRP00000001522/1-1113 SDPNWPEESP VPLTRADGTN TGCPRYANDS VYANWMVSPS AAQLMDTFDS bmy_07937T0/1-776 ---------- --------IS HAFTRF---- ---------- ---------- BACU003399/1-1046 ---------- --------IS HAFTRF---- ---------- ----------