KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:12:13 2014 Check: 00 .. Name: ENSTTRP00000010100/1-933 Len: 969 Check: 97 Weight: 1.00 Name: ENSP00000350686/1-938 Len: 969 Check: 3461 Weight: 1.00 Name: bmy_14778T0/1-555 Len: 969 Check: 8490 Weight: 1.00 Name: ENSBTAP00000000786/1-967 Len: 969 Check: 5313 Weight: 1.00 // 1 50 ENSTTRP00000010100/1-933 MLWPRLAAAE WAALAWELLG ASVLMIAVR- LVRRLDRRPR GLGRSGPPDR ENSP00000350686/1-938 MLWPRLAAAE WAALAWELLG ASVLLIAVRW LVRRLGPRPG GLGRSGTPVP bmy_14778T0/1-555 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000000786/1-967 MLWPRLAATE WAALAWELLG ASVLLIAVRW LVRRLDRRPR GLGQSGPPDP 51 100 ENSTTRP00000010100/1-933 PC-AAAGPVP DPGEMTMDTI LARLKLLNPD DLREEVIKAG LKCGPITSTT ENSP00000350686/1-938 PPSAAAAP-- ASGEMTMDAL LARLKLLNPD DLREEIVKAG LKCGPITSTT bmy_14778T0/1-555 ---MCSGP-- ---------- ---------- ---------- ---GPV---- ENSBTAP00000000786/1-967 PSRAVAGPAP DSGKMTMDTI LARLKLLNPD ELREEIVKAG LKCGPITSTT 101 150 ENSTTRP00000010100/1-933 RFIFEKKLAR ALLEHSTLPS HPPDHATAGA PALGQDTQRV VKSAVGSPAE ENSP00000350686/1-938 RFIFEKKLAQ ALLEQGGRLS SFYHH-EAGV TALSQDPQRI LKPAEGNPTD bmy_14778T0/1-555 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000000786/1-967 RFIFEKKLAQ ALLERGTLPS HLSDPGAADA PSLGQDTQRI VKSAVGSPAE 151 200 ENSTTRP00000010100/1-933 RVSFSEDRDF GYSVGLNPPE EDAVTSETCS VPFSALAGVG SHEAMLRASA ENSP00000350686/1-938 QAGFSEDRDF GYSVGLNPPE EEAVTSKTCS VPPSDT---D TYRAGATASK bmy_14778T0/1-555 ---------- ----GL---- ---------- ---------- ---------- ENSBTAP00000000786/1-967 QVSFSEDRDF GYSVGLNPPE EDAVTSKTCS APFSASGGIN SQKAVLRASA 201 250 ENSTTRP00000010100/1-933 EPPLYYGVCP -AYEDAPARN ERIHVYEDKK EALQAVKMIK GSRFKAFTSR ENSP00000350686/1-938 EPPLYYGVCP -VYEDVPARN ERIYVYENKK EALQAVKMIK GSRFKAFSTR bmy_14778T0/1-555 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000000786/1-967 EVPLYYGVCP AAFEDTPARN ERIHVYEDKK EALQAVKMNK GSRFKAFTNR 251 300 ENSTTRP00000010100/1-933 EDAEKFARGT CDYFPSPSKT SSPLSPVKTV PLFSSGGLRD GLYLSDSETA ENSP00000350686/1-938 EDAEKFARGI CDYFPSPSKT SLPLSPVKTA PLFSNDRLKD GLCLSESETV bmy_14778T0/1-555 ------ARSS AD-------- ---------- ----AGAWAA GLEATQ---- ENSBTAP00000000786/1-967 EDAEKFARGS CDYFPSPSKT SLPLSPVKTA PLFSNGGLKD GLYLSESETA 301 350 ENSTTRP00000010100/1-933 SKERANSYKS PRTQDLTAKL RKAVEKGEED TFSDLIWSNP RYLIGSGDNP ENSP00000350686/1-938 NKERANSYKN PRTQDLTAKL RKAVEKGEED TFSDLIWSNP RYLIGSGDNP bmy_14778T0/1-555 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000000786/1-967 SKERANSYKN PRTQDLTAKL RKAVEKGDED TFSDLIWSNP RYLIGSGDNP 351 400 ENSTTRP00000010100/1-933 TIVQEGCRYN VMHVAAKENQ AALCQLTLET LENPEFMRLM YPDDEPHMLE ENSP00000350686/1-938 TIVQEGCRYN VMHVAAKENQ ASICQLTLDV LENPDFMRLM YPDDDEAMLQ bmy_14778T0/1-555 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000000786/1-967 TIVQEGCRYN VMHVAAKENQ AAVCQLTLET LENPEFMRLM YPDDEPHMLE 401 450 ENSTTRP00000010100/1-933 KRICYVVDLY LNTPDRVGYD TPLHFACKFG NADVVNVLSS HPLIVKNPRN ENSP00000350686/1-938 KRIRYVVDLY LNTPDKMGYD TPLHFACKFG NADVVNVLSS HHLIVKNSRN bmy_14778T0/1-555 ---------- -------GYD TPLHFACKFG NADVVNVLSS HPLIVKNPRN ENSBTAP00000000786/1-967 KRICYVVDLY LNTPDRAGYD TPLHFACKFG NVDVVNVLSS HPLIVKNPRN 451 500 ENSTTRP00000010100/1-933 KYDKTPEDXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000350686/1-938 KYDKTPEDVI CERSKNKSVE LKERIREYLK GHYYVPLLRA EETSSPVIGE bmy_14778T0/1-555 KYDKTPEDVI CERSKNKSVE LKERIRDYLK GHYYVPLLRA EDTSSPVIGE ENSBTAP00000000786/1-967 KYDKTPEDVI CERSKNKSVE LKERIRDYLK GHYYVPLLRA EDTSSPVIGE 501 550 ENSTTRP00000010100/1-933 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXAE DFRRLWKTPP ENSP00000350686/1-938 LWSPDQTAEA SHVSRYGGSP RDPVLTLRAF AGPLSPAKAE DFRKLWKTPP bmy_14778T0/1-555 LWSSDHTGEV SHIGHSGGGP RDPVLTLRAF AGPLSPSKAE DFRRLWKTPP ENSBTAP00000000786/1-967 LWSSDQTGEV SHIGHTGGFP KDPVLTLRAF AGPLSPSKAE DFRRLWKTPP 551 600 ENSTTRP00000010100/1-933 REKAGFFHSV RKSDPERGIE RVGRQLAHEL GYPWVEYWDF LGCFVDLSSQ ENSP00000350686/1-938 REKAGFLHHV KKSDPERGFE RVGRELAHEL GYPWVEYWEF LGCFVDLSSQ bmy_14778T0/1-555 REKAGFFHSV RKSDPERGIE RVGRELAHEL GYPWVEYWDF LGCFVDLSSQ ENSBTAP00000000786/1-967 REKAGFFHSV RKSDPERGIE RVGRELAHEL GYPWVEYWDF LGCFVDLSSQ 601 650 ENSTTRP00000010100/1-933 AGLQKLEEYL TQQEVGKKTQ QDMGENAACL QEDASALG-- ---SNSISVR ENSP00000350686/1-938 EGLQRLEEYL TQQEIGKKAQ QETGEREASC RDKATTSG-- ---SNSISVR bmy_14778T0/1-555 AGLQKLEEYL TQQEVGKKPQ QDTGENAACL QEDASALGRH RKCSNSISVR ENSBTAP00000000786/1-967 AGLQKLEEYL TQQEVGKKHL QDMGENAACR QEDASALGRQ RKCSNSISVR 651 700 ENSTTRP00000010100/1-933 AFLDEDDDMS LEEIKNRQNT ARNNTQPTVA AFGDSGCDIL PLEQKTDLIE ENSP00000350686/1-938 AFLDE-DDMS LEEIKNRQNA ARNNSPPTVG AFGHTRCSAF PLEQEADLIE bmy_14778T0/1-555 AFLDEDDDMS LEEIKNRQNT ARNNTQPTVA AFGNSGCDIL PLEQKTDLIE ENSBTAP00000000786/1-967 AFLDEDDDMS LEEIKNRQNT ARNNTPPRAA AFGDLGCDIL PLEQ-TELIE 701 750 ENSTTRP00000010100/1-933 ASAPTSPRSS KNGFCSPPSD SKTLGGKRPK APSGEDAFLS PVSGLTVEFD ENSP00000350686/1-938 AAEPGGPHSS RNGLCHPLNH SRTLAGKRPK APRGEEAHLP PVSDLTVEFD bmy_14778T0/1-555 ASAPSSPRSS RNGFCSPPSD SKALGGKRPK APSREEAFLS PVSGLTVEFD ENSBTAP00000000786/1-967 ASAPTSPHSS RNGFCSPLRD GKTLGGKRPK AQSGEEDLRS PISGLTVEFD 751 800 ENSTTRP00000010100/1-933 KLNLQNLQSS FSNKTPRPTV KTRDKRILTS RVNPAESDML GPLAADKLGN ENSP00000350686/1-938 KLNLQNIGRS VS-KTPDEST KTKDQ-ILTS RINAVERDLL EPSPADQLGN bmy_14778T0/1-555 KLNLQSLESS FS-KTPSPTV KTRDKKILTS RVNTAESDML GPLAADKLGN ENSBTAP00000000786/1-967 KLNLQNLESS FS-KTPNQRV KTRDKKVLTS RVNAGGSDVL EPLAADRLGN 801 850 ENSTTRP00000010100/1-933 DQGRTEHGMS AGMADMCLDP DSPTQEARHG G--------- TKESVQSLFL ENSP00000350686/1-938 GHRRTESEMS ARIAKMSLSP SSPRHEDQ-- -------LEV TREPARRLFL bmy_14778T0/1-555 DHGRTEHGMS AGMADMCLDP DSPTQEARHG GGSEPSGVPA SKEPVQSLFL ENSBTAP00000000786/1-967 NQGRTENEMS AGIANMCLNP DSSVHEPRYG NGSEPSEIPA SKEPVQRLFL 851 900 ENSTTRP00000010100/1-933 FGEEPSKLDR DXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXWPSP ENSP00000350686/1-938 FGEEPSKLDQ DVLAALECAD VDPHQFPAVH RWKSAVLCYS PSDRQSWPSP bmy_14778T0/1-555 FGEEPSKLDR DVLAALECAD VDPHQYPALH RWRSAVLRYS PADRQSWPSP ENSBTAP00000000786/1-967 FGEEPSKLDR DVLAALECTD VDPRQYPAVH RWRSAVLCYS PSDRQSWSSP 901 950 ENSTTRP00000010100/1-933 SLKGKVKSQL PDIGGPPSG- ---------- -GSP------ -GRCSPGRYS ENSP00000350686/1-938 AVKGRFKSQL PDLSGPHSYS PGRNSVAGSN PAKP------ -GLGSPGRYS bmy_14778T0/1-555 SLKGKVKSQL LDIGGPPSG- ---------- ---------- ---GSPGRYS ENSBTAP00000000786/1-967 SLKGKLKSQL LDVSSPPSGS PGRSSPAGSS PGKPGSTPHA SGLGSPGRYS 951 1000 ENSTTRP00000010100/1-933 PARRGHLHRM ARLAQLATL ENSP00000350686/1-938 PVHGSQLRRM ARLAELAAL bmy_14778T0/1-555 PARRGHLHRT ARLAQLATL ENSBTAP00000000786/1-967 PANGGHLRRM ARLAQLATL