KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:12:14 2014 Check: 00 .. Name: bmy_18153T0/1-719 Len: 1071 Check: 5486 Weight: 1.00 Name: ENSTTRP00000006363/1-1020 Len: 1071 Check: 7165 Weight: 1.00 Name: ENSBTAP00000000788/1-1035 Len: 1071 Check: 4578 Weight: 1.00 Name: BACU000095/1-996 Len: 1071 Check: 5347 Weight: 1.00 // 1 50 bmy_18153T0/1-719 ---------- ---------- --MLLALLLL L--------- ---------L ENSTTRP00000006363/1-1020 MGSKRSVPSR RHSLSTYEVM FAALFAILVV LCVGLIAVAW LSIRGSERDA ENSBTAP00000000788/1-1035 MGSKRSVPSR HRSLTTYEVM FAVLFVILVA LCAGLIAVSW LSIQGSVKDA BACU000095/1-996 MGSKQSVPSR RHSLSTYEVM FAALFAILVV LCAGLIAVAW LSIKGSERDA 51 100 bmy_18153T0/1-719 PLPDPRSARG HPLYT----- ---------- --RVPPSTLQ AALSA----- ENSTTRP00000006363/1-1020 AFGKSHEARG TLTITSGVTY NPNLQDKLSV DFKVLAFDIQ QMIDDIFHXX ENSBTAP00000000788/1-1035 AFGKSHEARG TLKIISGATY NPHLQDKLSV DFKVLAFDIQ QMIDDIFQ-S BACU000095/1-996 AFGKSHEARG TLTITSGVTY NPNLQDKLSV DFKVLAFDIQ QMIDDIFQ-S 101 150 bmy_18153T0/1-719 -------QGT KVLQAAQRS- --------AQ WAVNRVV--- ---------- ENSTTRP00000006363/1-1020 XXXXXXXXXX XXXXXXNGSI IVIFDLLFAQ WVSDENVKEE MIQGIEAKKS ENSBTAP00000000788/1-1035 SNLKNEYKNS RVLQFENGSI IVIFDLLFDQ WVSDKNVKEE LIQGIEANKS BACU000095/1-996 SNLKNEYKNS RVLQFENGSI IVIFDLLFAQ WVSDENVKEE MIQGIEANKS 151 200 bmy_18153T0/1-719 ---------- --MEIQ---- ---------- ---------- ----HRLHEC ENSTTRP00000006363/1-1020 SQLDIFHIDV NSIDIT---- ---------- -DKLTTSSPL ATPGHVSIEC ENSBTAP00000000788/1-1035 SQLVTFHIDL NSIDITASLE NFSTISPATT SEKLTTSIPL ATPGNVSIEC BACU000095/1-996 SQLVTFHIDV NSIDIS---- ---------- ---------- ---GNVSIEC 201 250 bmy_18153T0/1-719 ----RSCANH TPP------C PG----PCGE RRPGAVNVTR AQGR-IMGGS ENSTTRP00000006363/1-1020 PPDSRLCADA LNCIAIDLFC DGELNCPDGS DEDNKICATA CDGRFLLTGS ENSBTAP00000000788/1-1035 PPDSRLCADA LKCIAIDLFC DGELNCPDGS DEDNKTCATA CDGRFLLTGS BACU000095/1-996 PPDSRLCADA LKCIAIDLFC DGELNCPDGS DEDNKICATA CDGRFLLTGS 251 300 bmy_18153T0/1-719 AAPPGA--WP ---------- -WLVRLQLGG QPLCGGVLVA ASWVLTAAHC ENSTTRP00000006363/1-1020 SGSFEAAHYP K-SSNPSVVC RWIIRVN-QG LSIQLNVDYF NTYYTDVLNI ENSBTAP00000000788/1-1035 SGSFEALHYP KPSNNTSAVC RWIIRVN-QG LSIQLNFDYF NTYYADVLNI BACU000095/1-996 SGSFEAPHYP K-SSNPSVVC RWIIRVN-QG LSIQLNFDYF NTYYTDVLNI 301 350 bmy_18153T0/1-719 FAGAPNELLW TVTLAEGPRG ---------- -----EQAEE VPVNRILPHP ENSTTRP00000006363/1-1020 YEGVGSSKIL RASLWSNNPG TIRIFSNQVT ATFLIQSVEN DYIGFNATYT ENSBTAP00000000788/1-1035 YEGMGSSKIL RASLWSNNPG IIRIFSNQVT ATFLIQSDES DYIGFKVTYT BACU000095/1-996 YEGVGSSKIL RASLWSQNPG TIRIFSNQVT ATFLIQSDEN DYIGFNATYT 351 400 bmy_18153T0/1-719 KFDPRTFHN- ---------- ------DLAL VQLWTPVSPT GAARPVCLPQ ENSTTRP00000006363/1-1020 AFNSKVLNNY EKINCNFEDG FCFWIQDLND DNEWERIQ-- GNTFP----- ENSBTAP00000000788/1-1035 AFNSKELNNY EKINCNFEDG FCFWIQDLND DNEWERTQ-- GSTFP----- BACU000095/1-996 AFNSKVLNNY EKINCNFEDG FCFWIQDLND DNEWERIQ-- GNTFP----- 401 450 bmy_18153T0/1-719 EPQEPPAGTA --CAIAGWGA LFEDGPEAEA VREARVPLLS ADTCRRVLGP ENSTTRP00000006363/1-1020 ----PSTGPN FDHTFGNDSG FYISTPTGLG GRREREGLLS L-----LLDP ENSBTAP00000000788/1-1035 ----PSTGPT FDHTFGNESG FYISTPTGPG GRRERVGLLT L-----PLDP BACU000095/1-996 ----PSTGPN FDHTFGNDSG FYISTPTGPG GRRERVGLLS L-----LLDP 451 500 bmy_18153T0/1-719 GLRPSSMLCA GYLAGGIDSC QGDSGGPLTC SEPGPRPREV LYGVTSWGDG ENSTTRP00000006363/1-1020 TLEPVCLSFX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000000788/1-1035 TPEQACLSFW YYMYGENVYK LSINISSDQN MEKTIFQKEG NYG-QNWNYG BACU000095/1-996 TLEPVCLSFW YYMYGENVYN LSISISSDQN IEKTIFQKEG NYG-ENWNYG 501 550 bmy_18153T0/1-719 CGEPGKPGVY TRVAVFKDWL QEQMSGERPD PIPPS-PECP ANCPGTSPFP ENSTTRP00000006363/1-1020 XXXXXXXXEF K--VAFNAFK NQFLSDIALD DISLTYGICN VSLYPEPTLV ENSBTAP00000000788/1-1035 QVTLNETVEF K--VSFYGFK NQILSDIALD DISLTYGICN VSVYPEPTLV BACU000095/1-996 QVTLNETMEF K--VAFNAFK NPFLSDIALD DISLTYGICN VSLYPEPTLV 551 600 bmy_18153T0/1-719 PCPRPQPPAR EPSCRELLAW DPSEEPLAEA APPCAFYAHL C----PGPAG ENSTTRP00000006363/1-1020 PTPLPELPXX XXXXXXX--X XXXXXXXXXX XXXXXXXXXX XVWNLNAQKG ENSBTAP00000000788/1-1035 PTPPPELPTD CGGPHDL--W EPNTTFTSIN FPNSYPNQAF CIWNLNAQKG BACU000095/1-996 PTPLPEHPTD CGGPFEL--W EPNTTFMSMN FPNNYPNQAF CVWNLNAQKG 601 650 bmy_18153T0/1-719 ACARLAHQQC LQRRRRCELR SLAHTLLELL RGAQE---LF GPRPGARPLA ENSTTRP00000006363/1-1020 KNIQLHFQA- ------FDLE NIAD-IVEIR DGEGDDSLLL AVYTGLGPVK ENSBTAP00000000788/1-1035 KNIQLHFQE- ------FDLE NIAD-VVEIR DGEGDDSLFL AVYTGPGPVN BACU000095/1-996 KNIQLHFQV- ------FDLE NIAD-VVEIR DGEGDDSLLL AVYTGPGPVK 651 700 bmy_18153T0/1-719 PALARPA--- ------PSLR DPPRHPSREQ RLHSGTPSPR SPAPAPPQRG ENSTTRP00000006363/1-1020 DVFSTTNRMT VLFITDDVMA KGGFKANFTT GYHLGIPEPC KEDNFQCKNG ENSBTAP00000000788/1-1035 DVFSTTNRMT VLFITDNMLA KQGFKANFTT GYGLGIPEPC KEDNFQCKDG BACU000095/1-996 DVFSTTNRMT VLFITDDALA KGGFQANFTT GYHLGIPEPC KEDNFQCKNG 701 750 bmy_18153T0/1-719 RGVPLTL--- QLPRIADGR- ---------- ---------- ---------- ENSTTRP00000006363/1-1020 ECVPLVNLCD SFQHCKDGSD EAHCVRLFNG TTN-RGLVQF RIQSIWHVAC ENSBTAP00000000788/1-1035 ECIPLVNLCD GFPHCKDGSD EAHCVRLFNG TTDSSGLVQF RIQSIWHVAC BACU000095/1-996 QCVPLVNLCD SVPHCKDGSD EAHCVRLFNG TTN-RGLVQF RIQSIWHVAC 751 800 bmy_18153T0/1-719 --HWAPEAE- -----VGAAR GSERLPW--- AGAPVAEVDC PPG------- ENSTTRP00000006363/1-1020 AENWTTQISN DVCQLMGLGS GNSSMPIFST GHGPFVQLNT TPNGSLILTP ENSBTAP00000000788/1-1035 AENWTTQISD DVCQLLGLGT GNSSVPTFST GGGPYVNLNT APNGSLILTP BACU000095/1-996 AENWTTQISN DVCQLLGLGS GNSSMPIFST GHGPFVQLNT TPNGSLILTP 801 850 bmy_18153T0/1-719 -HPCLD---- -LAGPLRAPG HGLSRGPGRP GLQD------ ---------- ENSTTRP00000006363/1-1020 SKQCLEDSLL LLQCNHKSCG KKLVAQEVSP KIVGGNNSRE GAWPWIVAVY ENSBTAP00000000788/1-1035 SQQCLEDSLI LLQCNYKSCG KKLVTQEVSP KIVGGSDSRE GAWPWVVALY BACU000095/1-996 R--------- -ILGFEKTCG KKLVAQDVNP RIVGGNDSRE GAWPWIVAVY 851 900 bmy_18153T0/1-719 -TDRTLPSLG L--------- -----GRLGG PAR-----GL ---------- ENSTTRP00000006363/1-1020 YNDRLLCGAS LVSRDWLVSA AHCVYGRNLE PSKWKAVLGL HMTSNLTSPQ ENSBTAP00000000788/1-1035 FDDQQVCGAS LVSRDWLVSA AHCVYGRNME PSKWKAVLGL HMASNLTSPQ BACU000095/1-996 YNDQLLCGAS LVSRDWLVSA AHCVYGRNLE PSKWKAVLGL HMTSNLTSPQ 901 950 bmy_18153T0/1-719 ---------- --------RR PGGSGASHAG TKPSXVAGAG PTGLPLGS-- ENSTTRP00000006363/1-1020 IETRLIDQIV INPHYNKRRK DSDIAMMHLE SKVNYTDYIQ PICLPEENQV ENSBTAP00000000788/1-1035 IETRLIDQIV INPHYNKRRK NNDIAMMHLE MKVNYTDYIQ PICLPEENQV BACU000095/1-996 IETRLIDQIV INPHYNKRRK DSDIAMMHLE SKVNYTDYIQ PICLPEENQV 951 1000 bmy_18153T0/1-719 --PGRGRALG TPDGFKA--- -GPRAG---E EGAPPTQPSG SPSQVALSRV ENSTTRP00000006363/1-1020 FPPGR---IC SIAGWGTLVY QGPPADILQE ADVPLLSNEK CQQEMPEYNI ENSBTAP00000000788/1-1035 FPPGR---IC SIAGWGALIY QGSTADVLQE ADVPLLSNEK CQQQMPEYNI BACU000095/1-996 FPPGR---IC SIAGWGTLVY QGPPADVLQE ADVPLLSNEK CQQEMPEYNI 1001 1050 bmy_18153T0/1-719 STRSPWSGLL LPG--PAEG- PGNMMTNRHG QSWVWAGAWG KGSWAQRTSP ENSTTRP00000006363/1-1020 TENMVCAGYE EGGVDSCQGD SGGPLTCQEN NRWFLVGVTS FGY--QCALP ENSBTAP00000000788/1-1035 TENMVCAGYE AGGVDSCQGD SGGPLMCQEN NRWLLAGVTS FGY--QCALP BACU000095/1-996 TENMVCAGYE EGGVDSCQGD SGGPLTCQEN NRWFLAGVTS FGY--QCALP 1051 1100 bmy_18153T0/1-719 DVPS-----E DHNCFNKHYL - ENSTTRP00000006363/1-1020 NRPGVCSRVP RFTEWIQSFL H ENSBTAP00000000788/1-1035 NRPGVYARVP RFTEWIQSFL H BACU000095/1-996 NRPGVCSRVP RFTEWIQSFL H