KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:12:17 2014 Check: 00 .. Name: ENSTTRP00000014601/1-521 Len: 530 Check: 7609 Weight: 1.00 Name: bmy_16809T0/1-515 Len: 530 Check: 302 Weight: 1.00 Name: BACU006088/1-371 Len: 530 Check: 4610 Weight: 1.00 Name: ENSP00000228567/1-523 Len: 530 Check: 5880 Weight: 1.00 Name: ENSBTAP00000000798/1-523 Len: 530 Check: 5486 Weight: 1.00 // 1 50 ENSTTRP00000014601/1-521 MSFQKEDGVS SLCQKALHIV TXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_16809T0/1-515 MSFQKEDGVS SLCQKALHIV TELCFAGQVE WEKCSSIFPP DRGSQGGSSA BACU006088/1-371 MSFQKEDGVS SLCQKALHIV TELCFAGQVE WEKCSSIFPP DRGSQGGSSA ENSP00000228567/1-523 MSFHKEDGVN SLCQKALHIV TELCFAGQVE WEKCSGIFPR DRGSQGGSST ENSBTAP00000000798/1-523 MSFHKEDGVS SLCQKALHIV TELCFAGQVE WEKCSSIFPP DGGSQGGSNT 51 100 ENSTTRP00000014601/1-521 XI-VSLLA-V VSFCGLALLV VSLFVFWKLC WPC------- WKSKPVTSNV bmy_16809T0/1-515 VDTVD----- ---------K TTDFHHYPTT TPCDHTPNSG FLGLKLIDNE BACU006088/1-371 DISVSLLAVV VSFCGLALLV VSLFVFWKLC WPC------- WKSKPVTSNV ENSP00000228567/1-523 DISVSLLAVV VSFCGLALLV VSLFVFWKLC WPC------- WKSKPVTSNI ENSBTAP00000000798/1-523 DISVSLLAVV VSFCGLALLV VSLFVFWKLC WPF------- WKSKPMTFNV 101 150 ENSTTRP00000014601/1-521 NTLPQSMSSA PTEVFETEEK KEVKENGEPA LKAIEPAIKI SHTSPDIPAE bmy_16809T0/1-515 ENL-KSMSSA PTEVFETEEK KEVKENGEPA LKAIEPAIKI SHTSPDIPAE BACU006088/1-371 STLPQSMSSA PTEVFETEEK KEVKENGEPA LKAIEPAIKI SHTSPDIPTE ENSP00000228567/1-523 TTLPQSISSA PTEVFETEEK KEIKENEKPA VKAIEPAIKI SHTSPDIPAE ENSBTAP00000000798/1-523 STLPQSMSSA PTEVFETEEK KEIKENGEPA PKVIEPAIKI SHTSPDIPAE 151 200 ENSTTRP00000014601/1-521 VQTALTEHLI KHARVQRQTT EPTSSSRHNS FRRHLPRQMQ VSSVDFGMGT bmy_16809T0/1-515 VQTALTEHLI KHARVQRQTT EPTSSSRHNS FRRHLPRQMQ VSSVDFGMGT BACU006088/1-371 VQTALTEHLI KHARVQRQTT EPTSSSRHNS FRRHLPRQMQ VSSVDFGMGT ENSP00000228567/1-523 VQTALKEHLI KHARVQRQIT EPTSSTRHSS FRRHLPRQMQ VSSVDFSMGT ENSBTAP00000000798/1-523 VQTAVKEHVI KHARVQRQTT EPTSSSRHNS FRRHLPRQMQ VSSVDFGMGT 201 250 ENSTTRP00000014601/1-521 EPILQRGETT TSIGRIKPEL YKQKSVDSEG NKKEDVKTCG KLNFTLQYDY bmy_16809T0/1-515 EPILQRGETT TSIGRIKPEL YKQKSVDSEG NKKEDVKTCG NLNFTLQYDY BACU006088/1-371 EPILQRGETT TSIGRIKPEL YKQKSVDSEG NKKEDVKTCG KLNFTLQYDY ENSP00000228567/1-523 EPVLQRGETT TSIGRIKPEL YKQKSVDSEG NQNEDVKICG KLNFTLQYDY ENSBTAP00000000798/1-523 EPILQRGETT TSIGRIKPEL YKQKSVDSED NRKEDVKTCG KLNFTLQYDY 251 300 ENSTTRP00000014601/1-521 ENELLVVKII KALDLPAKDF TGTSDPYVKM YLLPDRKKKF QTRVHRKTLN bmy_16809T0/1-515 ENELLVVKII KALDLPAKDF TGTSDPYVKM YLLPDRKKKF QTRVHRKTLN BACU006088/1-371 ENELLVVKII KALDLPAKDF TGTSDPYVKM YLLPDRKKKF QTRVHRKTLN ENSP00000228567/1-523 ENELLVVKII KALDLPAKDF TGTSDPYVKM YLLPDRKKKF QTRVHRKTLN ENSBTAP00000000798/1-523 ENELLVVKII KALDLPAKDF IGTSDPYVKM YLLPDRKKKF QTRVHRKTLN 301 350 ENSTTRP00000014601/1-521 PVFDETFQFP VAYDQXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_16809T0/1-515 PVFDETFQFP VAYDQLSNRK LHFGVYDFDR FSRHDMIGEV IFDNLFEASD BACU006088/1-371 PVFDETFQFP VAYDQLSNRK LHFGVYDFDR FSRHDMIGEV IFDNLFEASD ENSP00000228567/1-523 PLFDETFQFP VAYDQLSNRK LHFSVYDFDR FSRHDMIGEV ILDNLFEVSD ENSBTAP00000000798/1-523 PLFDETFQFP VAYDQLSNRK LHFSVYDFDR FSRHDMIGEV IFDNLFEASD 351 400 ENSTTRP00000014601/1-521 XXXXXXXXXX XXXXXXESID LGEIMFSLCY LPTAGRMTLT VIKCRNLKAM bmy_16809T0/1-515 LSREATVWKD IHCATTESID LGEIMFSLCY LPTAGRVTLT VIKCRNLKAM BACU006088/1-371 LSREATVWKD IHCATTVS-- ---------- ---------- ---------- ENSP00000228567/1-523 LSREATVWKD IHCATTESID LGEIMFSLCY LPTAGRMTLT VIKCRNLKAM ENSBTAP00000000798/1-523 LSREATVWKD IHCATTESID LGEIMFSLCY LPTAGRMTLT VIKCRNLKAM 401 450 ENSTTRP00000014601/1-521 DITGSSDPYV KVSLMCEGRR LKKRKTTTKK NTLNPVYNEA IIFDIPPENV bmy_16809T0/1-515 DITGSSDPYV KVSLMCEGRR LKKRKTTTKK NTLNPVYNEA IIFDIPPENV BACU006088/1-371 ---------- ---------- ---------- ------YNST NVF------- ENSP00000228567/1-523 DITGSSDPYV KVSLMCEGRR LKKRKTTTKK NTLNPVYNEA IIFDIPPENV ENSBTAP00000000798/1-523 DVTGSSDPYV KVSLMCEGRR LKKKKTTTKK NTLNPVYNEA IIFDIPPENV 451 500 ENSTTRP00000014601/1-521 DQVSLSIAVM DYDRVGHNEV IGVCRTGLDA EGLGRDHWNE MLAYHRKPIT bmy_16809T0/1-515 DQVSLSIAVM DYDRVGHNEV IGVCRTGLDA EGLGRDHWNE MLAYHRKPIT BACU006088/1-371 ----LFI--- ---------- ---------- ---------- ---------- ENSP00000228567/1-523 DQVSLSIAVM DYDRVGHNEV IGVCRTGLDA EGLGRDHWNE MLAYHRKPIT ENSBTAP00000000798/1-523 DQVSLSIAVM DYDRVGHNEV IGVCRTGLDA KGLGRDHWNE MLTYHRKPIT 501 550 ENSTTRP00000014601/1-521 HWHPLLELPG RATSFDSQGS CPSPKPPSTP bmy_16809T0/1-515 HWHPLLELPG RATSFDSQGS CASPKPPSTP BACU006088/1-371 ---------- ---------- ---------- ENSP00000228567/1-523 HWHPLLELPG RATSFDSQGS CPSPKPPSTP ENSBTAP00000000798/1-523 HWHPLLELPG RATSFDSQGS CPSPKPTSTP