KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:12:20 2014 Check: 00 .. Name: ENSP00000386962/1-1159 Len: 1171 Check: 6697 Weight: 1.00 Name: ENSBTAP00000000821/1-1145 Len: 1171 Check: 1727 Weight: 1.00 Name: ENSTTRP00000010060/1-1047 Len: 1171 Check: 9531 Weight: 1.00 Name: bmy_13257T0/1-1139 Len: 1171 Check: 8971 Weight: 1.00 Name: BACU008345/1-1112 Len: 1171 Check: 5802 Weight: 1.00 // 1 50 ENSP00000386962/1-1159 -MCGPAMFPA GP-PWPRVRV VQVLWALLAV LLASWRLWAI KDFQECTWQV ENSBTAP00000000821/1-1145 VTHLPEMFPV GPAPWPRLRV LWALWALLVV LLAPWRLWAI QETQECTWQV ENSTTRP00000010060/1-1047 ---------- ---------- ---------- ---------- ---------- bmy_13257T0/1-1139 ------MSPA GP-EWPRLRV LQALWALLVV LLAPWRLWAI KNTQECTWQV BACU008345/1-1112 ------MSPA GP-AWPRLRV LQALWALLVV LLAPWRLWAI KNTQECTWQV 51 100 ENSP00000386962/1-1159 VLNEFKRVGE SGVSDSFFEQ EPVDTVSSLF HMLVDSPIDP SEKYLGFPYY ENSBTAP00000000821/1-1145 VLNNLESVGK NDAIDHFVDQ E-LYTVDKVF DLLVDAPIDR DETYLGFPYY ENSTTRP00000010060/1-1047 ---------- ---------- ---------- ---------- --TYLGFPYY bmy_13257T0/1-1139 VLNNFETVGK KDASDRFVDQ EPLYTVDKVF SLLVDAPIDP D--------- BACU008345/1-1112 VLNNFETVGK KDASDRFVDQ EPLYTVDKVF SLLVDAPIDP DETYLGFPYY 101 150 ENSP00000386962/1-1159 LKINYSCEEK PSEDLVRMGH LTGLKPLVLV TFQSPVNFYR WKIEQLQIQM ENSBTAP00000000821/1-1145 LKINYSCTGE SSEALVRKGH LTGLKPVVLV TFQSPVNFHR WKIEQLQIQM ENSTTRP00000010060/1-1047 LKINYSCKGE SSEALVRKGH LTGLKPVVLV TFQSPVNFHR WKIEQLQIQM bmy_13257T0/1-1139 ---------E SSEALVRKGH LTGLKPVVLV TFQSPVNFHR WKIEQLQIQM BACU008345/1-1112 LKINYSCKGE SSEALVRKGH LTGLKPVVLV TFQSPVNFHR WKIEQLQIQM 151 200 ENSP00000386962/1-1159 EAAPFRSK-E PCMAEEVCSM SWYTPMPIKK GSVVMRVDIS SNGLGTFIPD ENSBTAP00000000821/1-1145 EAAPFRSP-E RCDAEEVCLM SWYTPMPIKN GSVVMRVDVS SNGLGPFIPN ENSTTRP00000010060/1-1047 EAAPFRSR-E RCNAEEVCLM SWYTPMPIKN GSVVMRVDVS SNGLGPFIPN bmy_13257T0/1-1139 EAAPFRSRAE RCNAEEVCLM SWYTPMPIKN GSVVMRVDVS SNGLGPFIPN BACU008345/1-1112 EAAPFRSR-E RCNAEEVCLM SWYTPMPIKN GSVVMRVDVS SNGLGPFIPN 201 250 ENSP00000386962/1-1159 KRFQMNINGF LKRDRDNNIQ FTVGEELFNL MPQYFVGVSS RPLWHTVDQS ENSBTAP00000000821/1-1145 KRFHVNINGF LERGRDHELQ FTVGNELFHL IPRHFVNVPS RPLWYTVDQT ENSTTRP00000010060/1-1047 KRFQVNINGF LERQRDNTLQ FTVGNELFNL IPRYFVNVPS RPLWYTVDQA bmy_13257T0/1-1139 KRFQVNINGF LERQRDTTLQ FTVGNELFNL IPRYFVNVPS RPLWYTVDQT BACU008345/1-1112 KRFQVNINGF LERQRDTTLQ FTVGNELFNL IPRYFVNVPS RPLWYTVDQT 251 300 ENSP00000386962/1-1159 PVLILGGIPN EKYVLMTDTS FKDFSLVELS IDSCWVGSFY CPHSGFTATI ENSBTAP00000000821/1-1145 PVLILGGIPE EKAILLTDTN FKDFFLVELS IDSCWVGSFY CPQASFTATI ENSTTRP00000010060/1-1047 PVFILGGIPE EKAILLTDTN FKDFFLVELS IDSCWVGSFY CPQTSFTATI bmy_13257T0/1-1139 PVFILGGIRE EKAILLTDTN FKDFFLVELS IDSCWVGSFY CPQTSFTATI BACU008345/1-1112 PVFILGGIPE EKAILLTDTN FKDFFLVELS IDSCWVGSFY CPQASFTATI 301 350 ENSP00000386962/1-1159 YDTIATESTL FIRQNQLVYY FTGTYTTLYE RNRGSGSWIR VLASECIKKL ENSBTAP00000000821/1-1145 YDAIATESTL FIRQNQLIYY FTGTYTTLYE NNHGSERWVR VLANECIKRL ENSTTRP00000010060/1-1047 YDAIATESTL FIRQNQLIYY FTGTYTTLHE SNRGSGEWVR VLANECIKKL bmy_13257T0/1-1139 FDAIATESTL FIRQNQLVYY FTGTYTTLHE SNRGSERWVR VLANECIKKL BACU008345/1-1112 FDAIATESTL FIRQNQLIYY FTGTYTTLHE SNRGSERWVR VLANECIKKL 351 400 ENSP00000386962/1-1159 CPVYFHSNGS EYIMALTTGK HEGYVHFGTI RDGQVSFEML PRQWSVCEQI ENSBTAP00000000821/1-1145 CPVHFHSNGS EYVMALTAGK NEGYVHFGTI TDGLVSFKLL PRDRSVCNAI ENSTTRP00000010060/1-1047 CPVHFHSNGS EYVMALTTGK HEGYVHFGTI TDGRVSFELL PRQRSVCSGI bmy_13257T0/1-1139 CPVHFHSNGS EYVMALTTGK HEGYVHFGTI TDGRVSFELL PRQRSVCNGI BACU008345/1-1112 CPVHFHSNGS EYVMALTTGK HEGYVHFGTI TDGRVSFELL PRQRSVCNGI 401 450 ENSP00000386962/1-1159 GVTTCSIIWS EYIAGEYTLL LLVESGYGNA SKRFQVVSYN TASDDLELLY ENSBTAP00000000821/1-1145 LVDNCSITWA VFIAGDYNLL MLVEIVGPTS SKYFQVVSYD LVSDYLVVLY ENSTTRP00000010060/1-1047 LVVNCSITWA VFIAGDYNLL LLVEIEDPST RKYFQVVSYD LVSDYLVVLY bmy_13257T0/1-1139 LVVNCSITWA VFIAGDYNLL LLVEIEDPST RKYFQVVSYD LVSDYLVVLY BACU008345/1-1112 LVVNCSITWA VFIAGDYNLL LLVEIEDPST RKYFQVVSYD LVSDYLVVLY 451 500 ENSP00000386962/1-1159 HIPEFIPEAR GLEFLMILGT ESYTSTAMAP KGIFCNPYNN LIFIWGNFLL ENSBTAP00000000821/1-1145 TIPEFIPDAR GLEFLMILGT ESYTNFPMVP KGMSYNPYNN LLLIWGNFLL ENSTTRP00000010060/1-1047 TIPEFIPDAR GLEFLMVLGT ESYTNFPMVP KGMSYNPYNN LLFIWGNFLL bmy_13257T0/1-1139 TIPEFIPDAR GLEFLMILGT ESYTNFPMVP KGMSYNPYNN LLFIWGNFLL BACU008345/1-1112 TIPEFIPDAR GLEFLMILGT ESYTNFPMVP KGMSYNPYNN LLFIWGNFLL 501 550 ENSP00000386962/1-1159 QSSNKENFIY LADFPKELSI KYMARSFRGA VAIVTETEEI WYLLEGSYRV ENSBTAP00000000821/1-1145 QSFNSENFIY LADFPKELSI KYLVNSFRGD MAIVTENEEI WYLLEGSYQV ENSTTRP00000010060/1-1047 QSYNSKNFIY LADFPKELSI KYLVNSFYGD TAIVTETEEI WYLLEGSYQV bmy_13257T0/1-1139 QGYNSENFIY LADFPKELSI KYLVNSFYGD TAIVTETEEI WYLLEGSYQV BACU008345/1-1112 QSYNSENFIY LADFPKELSI KYLVNSFYGD TAIVTETEEI WYLLEGSYQV 551 600 ENSP00000386962/1-1159 YQLFPSKGWQ VHISLKLMQQ SSLYASNETM LTLFYEDSKL YQLVYLMNNQ ENSBTAP00000000821/1-1145 YQLFPSKAWE VYISLQVLQQ SSRYAPNETM VTLFYEDNKL YQLVYLIDNQ ENSTTRP00000010060/1-1047 YKLFPSKGWE VHVSLQVMQQ SSLYAPNETM VTLFYEDHGL YQLVYLIDNQ bmy_13257T0/1-1139 YKLFPSKGWE VHVSLQMMQQ SSLYAPNETM VTLFYEDNKL YQLVYLIDNQ BACU008345/1-1112 YKLFPSRGWE VHVSLQVMQQ SSLYAPSETM VTLFYEDNKL YQLVYLIDHQ 601 650 ENSP00000386962/1-1159 KGQLVKRLVP VEQLLMYQQH TSHYDLERKG GYLMLSFIDF CPFSVMRLRS ENSBTAP00000000821/1-1145 QGRLIKRLMP VEQLLMYQQI SKEYVLERQG SHLTLSFSNF CPFTVMRLQE ENSTTRP00000010060/1-1047 QGRLVKRLVP VEQLLMYQQI SNDYLLERQG SHLTLSFTNF CPFTVMRLRD bmy_13257T0/1-1139 QGRLVKRLVP VEQLLMYQQI SNDYLLERQG SHLTLSFTNF CPFTVMRLRD BACU008345/1-1112 QGRLVKRLVP VEQLLMYQQI SNDYLLERQG SHLTLSFTNF CPFTVMRLRD 651 700 ENSP00000386962/1-1159 LPSPQRYTRQ ERYRARPPRV LERSGFHNEN SLAIYQGLVY YLLWLHSVYD ENSBTAP00000000821/1-1145 LPNPQIYTRQ ERYRAQPPRV LEPWGFHSEN SLAVYQGLVY YLLSLHSKYD ENSTTRP00000010060/1-1047 LPNPQIYTRQ ERYRAQPPRV L-PGGFHSDN SLAVYHGLVY YLLWLHSKYD bmy_13257T0/1-1139 LPNPQIYTRQ ERYRAQPPRV LEPWGFHSEN SLAVYQGLVY YLLWLHSKYD BACU008345/1-1112 LPNPQIYTRQ ERYRAQPPRV LEPWGFHSDN SLAVYQGLVY YLLWLHSKYD 701 750 ENSP00000386962/1-1159 KPYADPVHDP TWRWWANNKQ DQDYYFFLAS NWRSAGGVSI EMDSYEKIYN ENSBTAP00000000821/1-1145 KPYADPVHDP TWRWWKNKKQ DQDYYFYLAN NWRSTGSVHV DMTSYEKIYD ENSTTRP00000010060/1-1047 KPYADPVHDP TWRWWKNKKQ DQDYYFYLAS NWRSAGSVHV DMASYEKIYD bmy_13257T0/1-1139 KPYADPVHDP TWRWWKNKKQ DQDYYFYLAS NWRSAGSVHV DMASYEKIYD BACU008345/1-1112 KPYADPVHDP TWRWWKNKKQ DQDYYFYLAS NWRSAGSVHV DMASYEKIYD 751 800 ENSP00000386962/1-1159 LESAYELPER IFLDKGTEYS FAIFLSAQGH SFRTQSELGT --AFQLHSQV ENSBTAP00000000821/1-1145 LKAENELPER IFLDKGTSYS FSVFLTTRKP EVQH---AGP --SFQVLSPV ENSTTRP00000010060/1-1047 LKAENELPER IFLDKGTSYR FSVFLTAREP EP-------P --SFQLQSKV bmy_13257T0/1-1139 LKAENELPER IFLDKGTSYR FSVFLTAREP EPVH----GA --SFQVQSQV BACU008345/1-1112 LKAENELPER IFLDKGTSYR FSVFLTAREP EPVQGLWAGP GASFQVQSQV 801 850 ENSP00000386962/1-1159 DVGVVLADPG CIEASVKQEV LINRNSVLFS ITLKDKKLCY DQGISGHHLM ENSBTAP00000000821/1-1145 DLAVVLADPD CIEAMVKEKV LVNRNSVLFW VTLSDKRSCF DQGISGHHLM ENSTTRP00000010060/1-1047 GLAVVLADPE CIEAVVKEEV LVNRNSVLFW VTLSDKRFCF DQGISGHHLM bmy_13257T0/1-1139 GLAVVLADPG CIEAVVKEKV LVNRNSVLFW VTLSDKRFCF DQGISGHHLM BACU008345/1-1112 GLAVVLADPG CIEAVVKEKV LVNRNSVLFW VTLSDKRFCF DQGISGHHLM 851 900 ENSP00000386962/1-1159 ETSMTVNVVG SSGLCFQETH LGPHMQGNLM VPVFIGCPPG KRLAFDITYT ENSBTAP00000000821/1-1145 KTSMLVKVLG SSGHCFQNTN RGPRMQSNLM VPVLIGCPPG KRLAFDITYT ENSTTRP00000010060/1-1047 KTSMLLKVVG SSGHCFQNTN QGPRMQGNLM VPVLIGCPPG KRLAFDITYT bmy_13257T0/1-1139 KTSMLVKVVG SSGHCFQNTH QGPRMQGNLV VPVLIGCPPG KRLAFDITYT BACU008345/1-1112 KTSMLVK--- ---------- ------GNLM VPVLIGCPPG KRLAFDITYT 901 950 ENSP00000386962/1-1159 LEYSRLKNKH YFDCVNVNPE MPCFLFRDIF YPFFLIQDLV TGDSGSFQGS ENSBTAP00000000821/1-1145 LQYNRVQNKH YFDCVKVDPE MPCFLFRDIF YPFFLIQDLV TGDSGSFQGS ENSTTRP00000010060/1-1047 LEYNRLQNKH YFDCVHVDPE MPCFLFRDIF YPFFLIQDLV TGDSGSFQGS bmy_13257T0/1-1139 LEYNRLQNKR YFDCVHVDPE MPCFLFRDVF YPFFLIQDLV TGDSGSFQGS BACU008345/1-1112 LEYNRLQNKH YFDCVHVDPE MPCFLFRDVF YPFFLIQDLV TGDSGSFQGS 951 1000 ENSP00000386962/1-1159 YVLLVVGGGP TLDSLKDYSE DEIYRFNSPL DKTNSLIWTT RTTRTTKDSA ENSBTAP00000000821/1-1145 YVLKVVGGGP TLDTIKEYSE EEIYRFNSPL DKTGSLIWTT ENTTTTEDLA ENSTTRP00000010060/1-1047 YVLKVVGGGP T--------- ---------L DKTGSLIWTT RNTTTTEDSA bmy_13257T0/1-1139 YVLKVVGGGP TLDTIKEYSE EDIYRFNSPL DKTDSLIWTT RNTTTTEDSA BACU008345/1-1112 YVLKVVGGGP TLDTIKEYSE EDIYRFNSPL DKTDSLIWTT RNTTTTEDSA 1001 1050 ENSP00000386962/1-1159 FHIMSHESPG IEWLCLENAP CYDNVPQGIF APEFFFKVLV SNRGVDTSTY ENSBTAP00000000821/1-1145 FNIMSHNSLG IEWLCLENSQ -HDTIPHNIF APQFFFKVLV SNRGVDESTY ENSTTRP00000010060/1-1047 FNILSHNSLG IEWLCMENSP CHDTIPHSIF ASEFFFKVLV SNRGVDKSTY bmy_13257T0/1-1139 FNILSHNSLG IEWLCLENSP CHDTIPHSIF ASEFFFKVLV SNRGVDKSTY BACU008345/1-1112 FNILSHNSLG IE-------- ---------- ---------- ---GVDKSTY 1051 1100 ENSP00000386962/1-1159 CNYQLTFLLH IHGLPLSPKR ALFIIMVSAS VFVGLVIFYI AFCLLWPLVV ENSBTAP00000000821/1-1145 CDYQLTFLLH IHGLPLSARR AFLILLVSAS LFVGLVILYI ICCLLSPYMV ENSTTRP00000010060/1-1047 CDYQLTFQLH IHGLPLSARR AFLILMVSAS LFVGLVILYV ISCLLSPYVV bmy_13257T0/1-1139 CDYQLTFLLH IHGLPLSARR AFLILMVSAS LFVGLVILYI ISCLLSPYVV BACU008345/1-1112 CDYQLTFLLH IHGLPLSARR AFLILMVSAS LFVGLVILYI ISCLLSPYVV 1101 1150 ENSP00000386962/1-1159 KGCTMIRWKI NNLIASESYY TYASISGISS MP------SL RHSRMGSMFS ENSBTAP00000000821/1-1145 KVCNILRWKI NSIIGLESNY TYSTPSDSRA FSH-SGTVSW RSSRLNSRVV ENSTTRP00000010060/1-1047 KVCNVLCWKI NNIIAWES-Y IYSIASDTGA FSTPLG--SG ESSGGISRVV bmy_13257T0/1-1139 KVCNILCWKI NNIIAWES-Y TYSTXSDTRA FSNTSGTKSG ESSGGISRVF BACU008345/1-1112 KVCNVLCWKI NNIIAWES-Y TYSTASDTRA FSNTSGTKSG ESSGGITRVV 1151 1200 ENSP00000386962/1-1159 SRMT-EDRAE PKEAVERQLM T ENSBTAP00000000821/1-1145 YKGA------ ---------- - ENSTTRP00000010060/1-1047 SKVAGENRTD TKETLRKKPI S bmy_13257T0/1-1139 SKVAEENKTD TKETLRKKSI S BACU008345/1-1112 SKVAEENKTD SKETLRKKSI S