KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:12:26 2014 Check: 00 .. Name: ENSTTRP00000004090/1-931 Len: 936 Check: 2115 Weight: 1.00 Name: bmy_10482T0/1-562 Len: 936 Check: 2937 Weight: 1.00 Name: ENSP00000284987/1-930 Len: 936 Check: 179 Weight: 1.00 Name: BACU000106/1-652 Len: 936 Check: 3481 Weight: 1.00 Name: ENSBTAP00000000849/1-934 Len: 936 Check: 6938 Weight: 1.00 // 1 50 ENSTTRP00000004090/1-931 MLLEWASMLL CALRLPPVAA GPAAAPV-DK AGQPRVA--A AAAQPSRRQG bmy_10482T0/1-562 ---------- ---------- ---------- ---------- ---------- ENSP00000284987/1-930 MLLGWASLLL CAFRLPLAAV GPAATPAQDK AGQPPTA--A AAAQPRRRQG BACU000106/1-652 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000000849/1-934 MLLGWAALML CALRLPPVAA GPTAAPAQDK AGQPRAAAVA AAAQPRGRRG 51 100 ENSTTRP00000004090/1-931 EETQEPAEPP GHPHPLAPQR RSHGLVQNID QLYSGGGKVG YLIYAGGRRF bmy_10482T0/1-562 ---------- ---------- ---------- ---------- ---------- ENSP00000284987/1-930 EEVQERAEPP GHPHPLAQRR RSKGLVQNID QLYSGGGKVG YLVYAGGRRF BACU000106/1-652 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000000849/1-934 EEAQEPAEPP GHPHPLAPQR GSRGLVQNID QLYSGGGKVG YLVYAGGRRF 101 150 ENSTTRP00000004090/1-931 LLDLERDGSV GAAGFVPAGG GPNATRRHRG HCFYRGTVDG SPRSLAVFDL bmy_10482T0/1-562 ---------- ---------- ---------- ---------- ---------- ENSP00000284987/1-930 LLDLERDGSV GIAGFVPAGG GTSAPWRHRS HCFYRGTVDG SPRSLAVFDL BACU000106/1-652 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000000849/1-934 LLDLERDDSV GAAGLVPAGG GPNATRRHRG HCFYRGTVDG SPRSLAVFDL 151 200 ENSTTRP00000004090/1-931 CGGLDGFFAV KHARYTLKPL LRAPWAEAE- AGRVYGDGSA RILHVYTREG bmy_10482T0/1-562 ---------- ---------- ---------- ---------- ---------- ENSP00000284987/1-930 CGGLDGFFAV KHARYTLKPL LRGPWAEEE- KGRVYGDGSA RILHVYTREG BACU000106/1-652 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000000849/1-934 CGGLDGFFAV KRARYTLQPL LRGPWAEAEG DARVYGDESA RILHVYTREG 201 250 ENSTTRP00000004090/1-931 FSFEALPPRT SCETPTSPPG PRERPPAHSS PDRRWALALQ -LPDQSAPSS bmy_10482T0/1-562 ---------- ---------- ---------- --------MD KVPAIGIPEP ENSP00000284987/1-930 FSFEALPPRA SCETPASTPE AHEHAPAHSN PSGRAALASQ -LLDQSALSP BACU000106/1-652 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000000849/1-934 FSFEALPPRT SCETHASPPG ARERPPAPSR PDGRWALAPQ QLPGQSAPSS 251 300 ENSTTRP00000004090/1-931 DGSQRPQTWW RRRRRRRSVS RARQVELLLV ADASMARMYG QGLQHYLLTL bmy_10482T0/1-562 KGNASSLLW- ---------- ------LPIY LAKKMEWMAG GG-------- ENSP00000284987/1-930 AGGSGPQTWW --RRRRRSIS RARQVELLLV ADASMARLYG RGLQHYLLTL BACU000106/1-652 ---------- ---------- ---------- ----MARMYG QGLQHYLLTL ENSBTAP00000000849/1-934 DGSQGPRTWW --RRRRRSIS RARQVELLLV ADASMARMYG RGLQHYLLTL 301 350 ENSTTRP00000004090/1-931 ASIANKLYSH ASIENHIRLV VVKVVVLGDK DKSLEVSKNA AATLKNFCKW bmy_10482T0/1-562 ---------R EMLSDLLRLI V-------DQ RR-------- ---------W ENSP00000284987/1-930 ASIANRLYSH ASIENHIRLA VVKVVVLGDK DKSLEVSKNA ATTLKNFCKW BACU000106/1-652 ASIANKLYSH ASIENHIRLV VVKVVVLGDK DKSLEVSKNA AATLKNFCKW ENSBTAP00000000849/1-934 ASIANKLYSH ASIENHIRLV VVKVVVLGDK DKSLEVSKNA ATTLKNFCKW 351 400 ENSTTRP00000004090/1-931 QHQHNQLGAD HEEHYDAAIL FTREXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_10482T0/1-562 K--------- ---------- ---------- ---------- ---------- ENSP00000284987/1-930 QHQHNQLGDD HEEHYDAAIL FTREDLCGHH SCDTLGMADV GTICSPERSC BACU000106/1-652 QHQHNQLGDD HEEHYDAAIL FTREDLCGHH SCDTLGMADV GTICSPERSC ENSBTAP00000000849/1-934 QHQHNQLGDD HEEHYDAAIL FTREDLCGHH SCDTLGMADV GTICSPERSC 401 450 ENSTTRP00000004090/1-931 XXXXXXXXXX XXXXXXXXXH LLGLSHDDSK FCEENFGSTE DKRLMSSILT bmy_10482T0/1-562 -------IRQ AFKII--CRH LLGLSHDDSK FCEENFGSTE DKRLMSSILT ENSP00000284987/1-930 AVIEDDGLHA AFTVAHEIGH LLGLSHDDSK FCEETFGSTE DKRLMSSILT BACU000106/1-652 AVIEDDGLHA AFTVAHEIGH LLGLSHDDSK FCEENFGSTE DKRLMSSILT ENSBTAP00000000849/1-934 AVIEDDGLHA AFTVAHEIGH LLGLSHDDSK FCEENFGSTE DKRLMSSILT 451 500 ENSTTRP00000004090/1-931 SIDASKPWSK CTSATITEFL DDGHGNCLLD LPRKQILGPE ELPGQTYDAS bmy_10482T0/1-562 SIDASKPWSK CTSATITEFL DDGHGNCLLD LPRKQLLGPE ELPGQTYDAS ENSP00000284987/1-930 SIDASKPWSK CTSATITEFL DDGHGNCLLD LPRKQILGPE ELPGQTYDAT BACU000106/1-652 SIDASKPWSK CTSTTITEFL DDGHGNCLLD LPRKQLLGPE ELPGQTYDAS ENSBTAP00000000849/1-934 SIDASKPWSK CTSATITEFL DDGHGNCLLD LPRKQIPGPE ELPGQTYDAS 501 550 ENSTTRP00000004090/1-931 QQCNLTFGPE YSVCPGMDVC ARLWCAVVRQ GQMVCLTKKL PAVEGTPCGK bmy_10482T0/1-562 QQCNLTFGPE YSVCPGMDVC ARLWCAVVRQ GQMVCLTKKL PAVEGTPCGK ENSP00000284987/1-930 QQCNLTFGPE YSVCPGMDVC ARLWCAVVRQ GQMVCLTKKL PAVEGTPCGK BACU000106/1-652 QQCNLTFGPE YSVCPGMDVC ARLWCAVVRQ GQMVCLTKKL PAVEGTPCGK ENSBTAP00000000849/1-934 QQCNLTFGPE YSVCPGMDVC ARLWCAVVRQ GQMVCLTKKL PAVEGTPCGK 551 600 ENSTTRP00000004090/1-931 GRICLQGKCV DKTKKKYYST SSHGSWGSWG SWGQCSRSCG GGVQFAYRHC bmy_10482T0/1-562 GRICLQGKCV DKTKKKYYST SSHGSWGSWG SWGQCSRSCG GGVQFAYRHC ENSP00000284987/1-930 GRICLQGKCV DKTKKKYYST SSHGNWGSWG SWGQCSRSCG GGVQFAYRHC BACU000106/1-652 GRICLQGKCV DKTKKKYYST SSHGSWGSWG SWGQCSRSCG GGVQFAYRHC ENSBTAP00000000849/1-934 GRICLQGKCV DKTKKKYYST SSHGNWGSWG SWGQCSRSCG GGVQFAYRHC 601 650 ENSTTRP00000004090/1-931 NNPAPRNNGR YCTGKRAIYR SCSVLPCPAN GKSFRHEQCE AKNGYQSDAK bmy_10482T0/1-562 NNPAPRNNGR YCTGKRAIYR SCSVIPCPAN GKSFRHEQCE AKNGYQSDAK ENSP00000284987/1-930 NNPAPRNNGR YCTGKRAIYR SCSLMPCPPN GKSFRHEQCE AKNGYQSDAK BACU000106/1-652 NNPAPRNNGR YCTGKRAIYR SCSVIPCPAN GKSFRHEQCE AKNGYQSDAK ENSBTAP00000000849/1-934 NNPAPRNNGR YCTGKRAIYR SCSVTPCPAN GKSFRHEQCE AKNGYQSDAK 651 700 ENSTTRP00000004090/1-931 GVKTFVEWVP KYAGILPGDV CKLTCRAKGT GYYVVFSPKV TDGTECRPYS bmy_10482T0/1-562 GVKTFVEWVP KYAGVLPGD- ---------- ---------V TDGTECRPYS ENSP00000284987/1-930 GVKTFVEWVP KYAGVLPADV CKLTCRAKGT GYYVVFSPKV TDGTECRLYS BACU000106/1-652 GVKTFVEWVP KYAGVLPGDV CKLTCRAKGT GYYVVFSPKV TDGTECRPYS ENSBTAP00000000849/1-934 GVKTFVEWVP KYAGVLPGDV CKLTCRAKGT GYYVVFSPKV TDGTECRPYS 701 750 ENSTTRP00000004090/1-931 NSVCVRGKCV RTGCDGIIGS KLQYDKCGVC GGDNSSCTKV IGTFNKKSKG bmy_10482T0/1-562 NSVCVRGKCV RTGCDGIIGS KLQYDKCGVC GGDNSSCTKV IGTFNKKSKG ENSP00000284987/1-930 NSVCVRGKCV RTGCDGIIGS KLQYDKCGVC GGDNSSCTKI VGTFNKKSKG BACU000106/1-652 NSVCVRGKCV RTGCDGIIGS KLQYDKCGVC GGDNSSCTKV IGTFNKKSKG ENSBTAP00000000849/1-934 NSVCVRGKCV RTGCDGIIGS KLQYDKCGVC GGDNSSCTKV VGTFNKKSKG 751 800 ENSTTRP00000004090/1-931 YTDVVRIPEG ATHIKVRQFK AKDQTRFTAY LALKKKNGEY LINGKYMIST bmy_10482T0/1-562 YTDVVRIPEG ATHIKVRQFK AKDQTRFTAY LALKKKNGEY LINGKYMIST ENSP00000284987/1-930 YTDVVRIPEG ATHIKVRQFK AKDQTRFTAY LALKKKNGEY LINGKYMIST BACU000106/1-652 YTDVVRIPEG ATHIKVRQFK AKDQTRFTAY LALKKKNGEY LINGKYMIST ENSBTAP00000000849/1-934 YTDVVRIPEG ATHIKVRQFK AKDQTRFTAY LALKKKNGEY LINGKYMIST 801 850 ENSTTRP00000004090/1-931 SETIIDINGT VMNYSGWSHR DDFLHGMGYS ATKEILIVQI LATDPTKALD bmy_10482T0/1-562 SETIIDINGT VMNYSGWSHR DDFLHGMGYS ATKEILIVQI LATDPTKALD ENSP00000284987/1-930 SETIIDINGT VMNYSGWSHR DDFLHGMGYS ATKEILIVQI LATDPTKPLD BACU000106/1-652 SETIIDINGT VMNYSGWSHR DDFLHGMGYS ATKEILIVQI LATDPTKALD ENSBTAP00000000849/1-934 SETIIDINGT VMNYSGWSHR DDFLHGMGYS ATKEILIVQI LATDPTKALD 851 900 ENSTTRP00000004090/1-931 VRYSFFVPKK STPKVNSVTS DSSNKVGSPT PQLQWVTGPW LACSRTCDTG bmy_10482T0/1-562 VRYSFFVPKK STPKVNSVTS DSSNKVGSPT PQLQWVTGPW LACSRTCDTG ENSP00000284987/1-930 VRYSFFVPKK STPKVNSVTS HGSNKVGSHT SQPQWVTGPW LACSRTCDTG BACU000106/1-652 VRYSFFVPKK STPKVNSVTG DSSNKVGSPT PQLQWVTGPW LACSRTCDTG ENSBTAP00000000849/1-934 VRYSFFVPKK SAPKANSVTS QGSNKVGSPT PQLQWVTGPW LACSRTCDTG 901 950 ENSTTRP00000004090/1-931 WHTRTVQCQD GNRKLAKGCL LSQRPSAFKQ CLLKKC bmy_10482T0/1-562 WHTRTVQCQD GNGKLAKGCL LSQRPSAFKQ CSLKKC ENSP00000284987/1-930 WHTRTVQCQD GNRKLAKGCP LSQRPSAFKQ CLLKKC BACU000106/1-652 WHTRTVQCQD GNRKLAKGCL LSQRPSAFKQ CLLKKC ENSBTAP00000000849/1-934 WHTRTVQCQD GNRKLAKGCL LSQRPSAFKQ CFQKKC