KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:12:27 2014 Check: 00 .. Name: BACU002250/1-1207 Len: 1353 Check: 9244 Weight: 1.00 Name: ENSTTRP00000002777/1-808 Len: 1353 Check: 3828 Weight: 1.00 Name: bmy_02060T0/1-830 Len: 1353 Check: 623 Weight: 1.00 Name: ENSBTAP00000000852/1-808 Len: 1353 Check: 1792 Weight: 1.00 Name: ENSP00000318775/1-808 Len: 1353 Check: 9959 Weight: 1.00 // 1 50 BACU002250/1-1207 MAEPSEPGRQ ASAGGGSLEE EDEEDEEREP LLPRIAWAQP RKGAPGGAVR ENSTTRP00000002777/1-808 ---------- ---------- ---------- ---------- -------MLR bmy_02060T0/1-830 ---------- ---------- ---------- ---------- -------MLR ENSBTAP00000000852/1-808 ---------- ---------- ---------- ---------- -------MLR ENSP00000318775/1-808 ---------- ---------- ---------- ---------- -------MLR 51 100 BACU002250/1-1207 LEKAAGEEGA ASPNQASDRE LLLLPRDASF SSSLSLERLR SSPTNLDRNR ENSTTRP00000002777/1-808 F--------- ---------- ---------- ---------- --PTCFPSFR bmy_02060T0/1-830 F--------- ---------- ---------- ---------- --PTCFPSFR ENSBTAP00000000852/1-808 F--------- ---------- ---------- ---------- --PTCFPSFR ENSP00000318775/1-808 F--------- ---------- ---------- ---------- --PTCFPSFR 101 150 BACU002250/1-1207 PVGSELNTFL DDPEFADVIL KAEQAIEFGV YPERISQGSS GSYFVKDPKR ENSTTRP00000002777/1-808 VVG------- -EKQLPQEII ---------- ---------- --FLVWSPKR bmy_02060T0/1-830 VVG------- -EKQLPQEII ---------- ---------- --FLVWSPKR ENSBTAP00000000852/1-808 VVG------- -EKQLPQEII ---------- ---------- --FLVWSPKR ENSP00000318775/1-808 VVG------- -EKQLPQEII ---------- ---------- --FLVWSPKR 151 200 BACU002250/1-1207 VVWLVSETFN YSAIDRAKSR GKKYALEKVP KVGRKFHRI- GLPPKIGSFQ ENSTTRP00000002777/1-808 DLIALANTAG EVLLHRLAS- ---------- -----FHRVW SFPP------ bmy_02060T0/1-830 DLIALANTAG EVLLHRLAS- ---------- -----FHRVW SFPP------ ENSBTAP00000000852/1-808 DLIALANTAG EVLLHRLAS- ---------- -----FHRVW SFPP------ ENSP00000318775/1-808 DLIALANTAG EVLLHRLAS- ---------- -----FHRVW SFPP------ 201 250 BACU002250/1-1207 LFVEGYKEAE YWLRKFEADP LPENIRKQFQ SQFERLVILD YLIRNTDRGN ENSTTRP00000002777/1-808 ---------- ---------- ---------- ---------- ----NENTGK bmy_02060T0/1-830 ---------- ---------- ---------- ---------- ----NENTGK ENSBTAP00000000852/1-808 ---------- ---------- ---------- ---------- ----NENTGK ENSP00000318775/1-808 ---------- ---------- ---------- ---------- ----NENTGK 251 300 BACU002250/1-1207 DNWLIRCENQ KQEDEITETK RTDDKETLIK IAAIDNGLAF PFKHPDEWRA ENSTTRP00000002777/1-808 E---VTC--- ---------- ---------- ---------- ---------- bmy_02060T0/1-830 E---VTC--- ---------- ---------- ---------- ---------- ENSBTAP00000000852/1-808 E---VTC--- ---------- ---------- ---------- ---------- ENSP00000318775/1-808 E---VTC--- ---------- ---------- ---------- ---------- 301 350 BACU002250/1-1207 YPFHWAWLPQ AKVPFSEEIR SLVLPYISDM NFVQDLCEDL YELFKLSGAR ENSTTRP00000002777/1-808 ----LAWRPD G--------- ---------- ---------- ---------- bmy_02060T0/1-830 ----LAWRPD G--------- ---------- ---------- ---------- ENSBTAP00000000852/1-808 ----LAWRPD G--------- ---------- ---------- ---------- ENSP00000318775/1-808 ----LAWRPD G--------- ---------- ---------- ---------- 351 400 BACU002250/1-1207 LAAREAHNRR YQPPLSRSQC VERYLKFIEL PLSQRKFCQR CQQLLLPDDE ENSTTRP00000002777/1-808 ---------- ---------- -----KLLAF ALADTK---- ---------- bmy_02060T0/1-830 ---------- ---------- -----KLLAF ALADTK---- ---------- ENSBTAP00000000852/1-808 ---------- ---------- -----KLLAF ALADTK---- ---------- ENSP00000318775/1-808 ---------- ---------- -----KLLAF ALADTK---- ---------- 401 450 BACU002250/1-1207 EKHRKHQIVG DISITQLKRP SQLLYPLENK KTNAQYLFAD RSCLFLVDLL ENSTTRP00000002777/1-808 ---------- KIVLCDVEKP ESL------- ---------- ---------- bmy_02060T0/1-830 ---------- KIVLCDVEKP ESL------- ---------- ---------- ENSBTAP00000000852/1-808 ---------- KIVLCDVEKP ESL------- ---------- ---------- ENSP00000318775/1-808 ---------- KIVLCDVEKP ESL------- ---------- ---------- 451 500 BACU002250/1-1207 STLGFRRVLC VGTPRLHELI RLKASGDKKS NIKSLLLDID FRYSQFYMED ENSTTRP00000002777/1-808 ---------- ---------- ---------- ---------- ---------- bmy_02060T0/1-830 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000000852/1-808 ---------- ---------- ---------- ---------- ---------- ENSP00000318775/1-808 ---------- ---------- ---------- ---------- ---------- 501 550 BACU002250/1-1207 SFCHYNMFNH HFFDGKAALE VCRTFLQKDE GEGVIMVTDP PFGGLVEPLA ENSTTRP00000002777/1-808 ---------- HSFSVEA--- ---------- ---------- ---------- bmy_02060T0/1-830 ---------- HSFSVEA--- ---------- ---------- ---------- ENSBTAP00000000852/1-808 ---------- HSFPVEA--- ---------- ---------- ---------- ENSP00000318775/1-808 ---------- HSFSVEA--- ---------- ---------- ---------- 551 600 BACU002250/1-1207 VTFKKLIAMW KEGQSQDNSH KELPIFWIFP YFFESRICQF FPSFCMLDYQ ENSTTRP00000002777/1-808 ---------- ---------- ---------- ---------- -PVSCMHWME bmy_02060T0/1-830 ---------- ---------- ---------- ---------- -PVSCMHWME ENSBTAP00000000852/1-808 ---------- ---------- ---------- ---------- -PVSCMHWME ENSP00000318775/1-808 ---------- ---------- ---------- ---------- -PVSCMHWME 601 650 BACU002250/1-1207 VDYDNHALYK HGKTGRKQSP VRIFTNIPPN KIILPIEEGY SVLTSFYNSE ENSTTRP00000002777/1-808 VTVES----- ---------- ---------- ---------- SVLTSFYNSE bmy_02060T0/1-830 VTVES----- ---------- ---------- ---------- SVLTSFYNSE ENSBTAP00000000852/1-808 VTVES----- ---------- ---------- ---------- SVLTSFYNSE ENSP00000318775/1-808 VTVES----- ---------- ---------- ---------- SVLTSFYNAE 651 700 BACU002250/1-1207 DESNLLLPKL PTLPKNYSNT SKIFSEENSD EIIKLLGDVR LNILVLGGSS ENSTTRP00000002777/1-808 DESNLLLPKL PTLPKNYNNT SKIFSEENSD EIIKLLGDVR LNILVLGGSS bmy_02060T0/1-830 DESNLLLPKL PTLPKNYSNT SKIFSEENSD EIIKLLGDVR LNILVLGGSS ENSBTAP00000000852/1-808 DESNLLLPKL PTLPKNYSNT SKIFSEENSD EIIKLLGDVR LNILVLGGSS ENSP00000318775/1-808 DESNLLLPKL PTLPKNYSNT SKIFSEENSD EIIKLLGDVR LNILVLGGSS 701 750 BACU002250/1-1207 AFIELYAYGM FKIARVTG-- ---------- ---------- ---------- ENSTTRP00000002777/1-808 AFIELYAYGM FKIARVTGXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_02060T0/1-830 AFIELYAYGM FKIARVTGIV GTCLALCLSS DLKSLSVVTE VSTSGAPEVS ENSBTAP00000000852/1-808 GFIELYAYGM FKIARVTGIV GTCLALCLSS DLKSLSVVTE VSASGASEVS ENSP00000318775/1-808 GFIELYAYGM FKIARVTGIA GTCLALCLSS DLKSLSVVTE VSTNGASEVS 751 800 BACU002250/1-1207 ---LETNLLY SFLPEVTRMA RKFTHISALL ---------- ---------- ENSTTRP00000002777/1-808 XFQLETNLLY SFLPEVTRMA RKFTHISALL QYINLSLTCM CEAWEEILMQ bmy_02060T0/1-830 YFQLETNLLY SFLPEVTRMA RKFTHISALL QYINLSLTCM CEAWEEILMQ ENSBTAP00000000852/1-808 YFQLETNLLY SFLPEVTRMA RKFTHISALL QYINLSLTCM CEAWEEILMQ ENSP00000318775/1-808 YFQLETNLLY SFLPEVTRMA RKFTHISALL QYINLSLTCM CEAWEEILMQ 801 850 BACU002250/1-1207 ---------Q EKNTTTSVQD EFMDLLLWGK A--------- ---------- ENSTTRP00000002777/1-808 MDSRLTKFVQ EKNTTTSVQD EFMDLLLWGK ASAELQTLLM NQLTVKGLKK bmy_02060T0/1-830 MDSRLTKFVQ EKNTTTSVQD EFMDLLLWGK ASAELQTLLM NQLTVKGLKK ENSBTAP00000000852/1-808 MDSRLTKFVQ EKNTTTSVQD EFMDLLLWGK ASAELQTLLM NQLTVKGLKK ENSP00000318775/1-808 MDSRLTKFVQ EKNTTTSVQD EFMHLLLWGK ASAELQTLLM NQLTVKGLKK 851 900 BACU002250/1-1207 ---------- ---------- -SGSESLLYH LSELKGMASW KQKYEPLGLD ENSTTRP00000002777/1-808 LGQSIESSYS SIQKLVISHL QSGSESLLYH LSELKGMASW KQKYEPLGLD bmy_02060T0/1-830 LGQSIESSYS SIQKLVISHL QSGSESLLYH LSELKGMASW KQKYEPLGLD ENSBTAP00000000852/1-808 LGQSIESSYS SIQKLVISHL QSGSESLLYH LSELKGMASW KQKYEPLGLD ENSP00000318775/1-808 LGQSIESSYS SIQKLVISHL QSGSESLLYH LSELKGMASW KQKYEPLGLD 901 950 BACU002250/1-1207 ASGIEGDAIT AVGSFILKAN ELLQVIDSSM KNFKAFFRWL YVGPTAGGGL ENSTTRP00000002777/1-808 ASGIE-DAIT AVGSFILKAN ELLQVIDSSM KNFKAFFRWL YVA---MLRM bmy_02060T0/1-830 ASGIEGDAIT AVGSFILKAN ELLQVIDSSM KNFKAFFRWL YVG---GCNM ENSBTAP00000000852/1-808 AAGIE-DAIT AVGSFILKAN ELLQVIDSSM KNFKAFFRWL YVA---MLRM ENSP00000318775/1-808 AAGIE-EAIT AVGSFILKAN ELLQVIDSSM KNFKAFFRWL YVA---MLRM 951 1000 BACU002250/1-1207 GGQR------ ---------- IRPGISAGSR GPQWMTQKDI TFVAEFLTEH ENSTTRP00000002777/1-808 TEDH------ ---------- VLPELN---- -K--MTQKDI TFVAEFLTEH bmy_02060T0/1-830 YRKHGIDKDT PMKGQKEPTT ILKYINIYIY TH--MTQKDI TFVAEFLTEH ENSBTAP00000000852/1-808 TEDH------ ---------- VLPELN---- -K--MTQKDI TFVAEFLTEH ENSP00000318775/1-808 TEDH------ ---------- VLPELN---- -K--MTQKDI TFVAEFLTEH 1001 1050 BACU002250/1-1207 FNEAPDLYNR KGKYFNVERV GQYLKDEDDD LVSPPNTEGN QWYDFLQNSS ENSTTRP00000002777/1-808 FNEAPDLYNR KGKYFNVEKV GQYLKDEDDD LVSPPNTEGN QWYDFLQNSS bmy_02060T0/1-830 FNEAPDLYNR KGKYFNVEKV GQYLKDEDDD LVSPPNTEGN QWYDFLQNSS ENSBTAP00000000852/1-808 FNEAPDLYNR KGKYFNVEKV GQYLKDEDDD LVSPPNTEGN QWYDFLQNSS ENSP00000318775/1-808 FNEAPDLYNR KGKYFNVERV GQYLKDEDDD LVSPPNTEGN QWYDFLQNSS 1051 1100 BACU002250/1-1207 HLKESPLLFP YYPRKSLHFV KRRMENVIDQ CLQKPADVIG KSMNQAICIP ENSTTRP00000002777/1-808 HLKESPLLFP YYPRKSLHFV KRRMENVIDH CLQKPADVIG KSMNQAICIP bmy_02060T0/1-830 HLKESPLLFP YYPRKSLHFV KRRMENVIDQ CLQKPADVIG KSMNQAICIP ENSBTAP00000000852/1-808 HLKESPLLFP YYPRKSLHFV KRRMENVIDQ CLQKPADVIG KSMNQAVCIP ENSP00000318775/1-808 HLKESPLLFP YYPRKSLHFV KRRMENIIDQ CLQKPADVIG KSMNQAICIP 1101 1150 BACU002250/1-1207 LYTDARSEDS TRRLFKFPFL WNNKTSNLHY LLFTILEDSL YKMCILRRHT ENSTTRP00000002777/1-808 LYRDARSEDS TRRLFKFPFL WNNKTSNLHY LLFTILEDSL YKMCILRRHT bmy_02060T0/1-830 LYRDARSEDS TRRLFKFPFL WNNKTSNLHY LLFTILEDSL YKMCILRRHT ENSBTAP00000000852/1-808 LYKDSRSEDS TRRLFKFPFL WNNKTSNLHY LLFTILEDSL YKMCILRRHT ENSP00000318775/1-808 LYRDTRSEDS TRRLFKFPFL WNNKTSNLHY LLFTILEDSL YKMCILRRHT 1151 1200 BACU002250/1-1207 DISH------ ---------- ---------T YSCLDAQFYD DETVTVVLKD ENSTTRP00000002777/1-808 DISQSVSNGL IAIKFGSFTY ATTEKVRRST YSCLDAQFYD DETVTVVLKD bmy_02060T0/1-830 DISQSVSNGL IAIKFGSFTY ATTEKVRRST YSCLDAQFYD DETVTVVLKD ENSBTAP00000000852/1-808 DISQSVSNGL IAVKFGSFTY ATTEKVRRST YSCLDAQFYD DETVTVVLKD ENSP00000318775/1-808 DISQSVSNGL IAIKFGSFTY ATTEKVRRSI YSCLDAQFYD DETVTVVLKD 1201 1250 BACU002250/1-1207 TVGREGRDRL LVQLPLSLVY NSEDSAEYQF TGSYSTRLDE QRSAIPTRTM ENSTTRP00000002777/1-808 TVGREGRDRL LVQLPLSLVY NSEDSAEYQF TGSYSTRLDE QRSAIPTRTM bmy_02060T0/1-830 TVGREGRDRL LVQLPLSLVY NSEDSAEYQF TGSYSTRLDE QRSAIPTRTM ENSBTAP00000000852/1-808 TVGREGRDRL LVQLPLSSVY NSEDSAEYQF TGTYSIRLDE QRHAIPTRTM ENSP00000318775/1-808 TVGREGRDRL LVQLPLSLVY NSEDSAEYQF TGTYSTRLDE QCSAIPTRTM 1251 1300 BACU002250/1-1207 HFEKHWRLLE SMKAQYVAGN GFRKVSCVLS SNLRHVRVFE MDIDDEWELD ENSTTRP00000002777/1-808 HFEKHWRLLE SMKAQYVAGN GFRKVSCVLS SNLRHVRVFE MDIDDEWELD bmy_02060T0/1-830 HFEKHWRLLE SMKAQYVAGN GFRKVSCVLS SNLRHVRVFE MDIDDEWELD ENSBTAP00000000852/1-808 HFEKHWRLLE SMKAQYVAGN GFRKVSCVLS SNLRHVRVFE MDIDDEWELD ENSP00000318775/1-808 HFEKHWRLLE SMKAQYVAGN GFRKVSCVLS SNLRHVRVFE MDIDDEWELD 1301 1350 BACU002250/1-1207 ESSDEEEEAS NKPVKIKEEV LSESEAENQQ AGTAALAPEM VIKVEKLDPE ENSTTRP00000002777/1-808 ESSDEEEEAS NKPVKIKEEV LSESEAENQQ AGTAALAPEM VIKVEKLDPE bmy_02060T0/1-830 ESSDEEEEAS NKPVKIKEEV LSESEAENQQ AGTAALAPEM VIKVEKLDPE ENSBTAP00000000852/1-808 ESSDEEEEAG NKPVKIKEEV LSESEAETQQ AGAAASAPEM VIKVEKVDPE ENSP00000318775/1-808 ESSDEEEEAS NKPVKIKEEV LSESEAENQQ AGAAALAPEI VIKVEKLDPE 1351 1400 BACU002250/1-1207 LDS ENSTTRP00000002777/1-808 LDS bmy_02060T0/1-830 LDS ENSBTAP00000000852/1-808 LDS ENSP00000318775/1-808 LDS