KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:12:33 2014 Check: 00 .. Name: bmy_16554T0/1-493 Len: 1257 Check: 7375 Weight: 1.00 Name: BACU004431/1-1015 Len: 1257 Check: 6486 Weight: 1.00 Name: ENSP00000327850/1-930 Len: 1257 Check: 5446 Weight: 1.00 Name: ENSTTRP00000015671/1-904 Len: 1257 Check: 9796 Weight: 1.00 Name: ENSBTAP00000000859/1-914 Len: 1257 Check: 4012 Weight: 1.00 // 1 50 bmy_16554T0/1-493 ---MFAQREA PVGACPS-ER AVAGAERGGA REGRRDPAGQ AGARAAAPLE BACU004431/1-1015 ---------- -MGAVSSLER LQPGAD---- ---------- -----CTP-- ENSP00000327850/1-930 MTGL-EDQEF DFEFLFEFNQ RDEGAA---- ---------- ----AAAP-- ENSTTRP00000015671/1-904 MTGLEEDQEF DFDFLFEFNQ SDEGAA---- ---------- ----AATA-- ENSBTAP00000000859/1-914 MTGLEEDQEF DFDFLFEFNQ SDEGAV---- ---------- -----AAP-- 51 100 bmy_16554T0/1-493 RSPSRRPGPR GGGVRPVPDR GVPELVGCEH YSYVTSGIGS GLPLSSAHPS BACU004431/1-1015 ---------- ---------- --------EH YSYVTSGIGS GLPLSSAHPS ENSP00000327850/1-930 ---------- ---------- --------EH YGYASSNVSP ALPLPTAHST ENSTTRP00000015671/1-904 ---------- ---------- --------EH YSYVTSGIGS GLPLSSAHPS ENSBTAP00000000859/1-914 ---------- ---------- -------AEH YGYAAPGLGA GLPLSAAHPS 101 150 bmy_16554T0/1-493 LPAPCHDLQT SAPGIAAA-- ---GYGAALD GGPSSYFLSS GGVRPNGAPA BACU004431/1-1015 LPAPCHDLQT SAPGISSA-- ---GYGAALD GGPSSYFLSS GGVRPNGAPA ENSP00000327850/1-930 LPAPCHNLQT STPGIIPPAD HPSGYGAALD GGPAGYFLSS GHTRPDGAPA ENSTTRP00000015671/1-904 LPAPCHGLQT SAPGV-PP-- ---GYGAALD GGPSSYFLSS GGVRPNGAPA ENSBTAP00000000859/1-914 LPAPCHDLQS SAAGVSAV-- ---GYGGTVD SGPSGYFLSS GGIRPNGAPA 151 200 bmy_16554T0/1-493 LESPRIEITS YLGLHHGNGQ FFHDVDVEDV LPSSKRSPST ATLNLPNLEA BACU004431/1-1015 LESPRIEITS YLGLHHGNGQ FFHDVDVEDV LPSSKRSPST ATLNLPNLEA ENSP00000327850/1-930 LESPRIEITS CLGLYHNNNQ FFHDVEVEDV LPSSKRSPST ATLSLPSLEA ENSTTRP00000015671/1-904 LESPRIEITS YLGLHHGNGQ FFHDADAEDV LPSSKRSPAR A-MQLRG--- ENSBTAP00000000859/1-914 LESPRIEITS YLGLHHNSSQ FLHEVDVEDV LP--KRSPST ATLNLPSLEA 201 250 bmy_16554T0/1-493 YRDPSCLSPA SSLSSRSCNS EASSYESSFS YPYASPQTSP WQSPCVSPKT BACU004431/1-1015 YRDPSCLSPA SSLSSRSCNS EASSYESSFS YPYASPQTSP WQSPCVSPKT ENSP00000327850/1-930 YRDPSCLSPA SSLSSRSCNS EASSYESNYS YPYASPQTSP WQSPCVSPKT ENSTTRP00000015671/1-904 ------ASPS AQVGRWRRGP ALVAYESSFS YPYASPQTSP WQSPCVSPKT ENSBTAP00000000859/1-914 YRDPSCLSPA SSLSSRSCNS EASSYESSFS YPYASPQTSP WQSPCVSPKT 251 300 bmy_16554T0/1-493 TDPEEGFPRG LGACGLLGSP RHSPSTSPRA SVTEESWLGA RTSRPSSPCN BACU004431/1-1015 TDPEEGFPRG LGACGLLGSP RHSPSTSPRA SVTEESWLGA RTSRPSSPCN ENSP00000327850/1-930 TDPEEGFPRG LGACTLLGSP RHSPSTSPRA SVTEESWLGA RSSRPASPCN ENSTTRP00000015671/1-904 TDPEEGFPRG LGACGLLGSP RHSPSTSPRT SVTEESWLGA RTSRPSSPCN ENSBTAP00000000859/1-914 TDPEEGFARG LGACGLLGSP RHSPSTSPRT SVTEESWLGA RTSRPSSPCN 301 350 bmy_16554T0/1-493 KRKYGLNGRQ LSCSPHPSPT PSPQGSPRVS VTDDTWLGNT TQYTSSAIVA BACU004431/1-1015 KRKYGLNGRQ LSCSPHPSPT PSPQGSPRVS VTDDTWLGNT TQYTSSAIVA ENSP00000327850/1-930 KRKYSLNGRQ PPYSPHHSPT PSPHGSPRVS VTDDSWLGNT TQYTSSAIVA ENSTTRP00000015671/1-904 KRKYGLNGRQ LSCSPHPSPT PSPQGSPRVS VTDDTWLGNT TQYTSSAIVA ENSBTAP00000000859/1-914 KRKYGLNGRQ LSCSPHPSPT PSPQGSPRVS VTDDTWLGNT TQYTSSAIVA 351 400 bmy_16554T0/1-493 AINALSTDGS LDLGDGVPVK ARKTALDHSP SVALKVEPAG EDLGATPPTS BACU004431/1-1015 AINALSTDGS LDLGDGVPVK ARKTALDHSP SVALKVEPAG EDLGATPPTS ENSP00000327850/1-930 AINALTTDSS LDLGDGVPVK SRKTTLEQPP SVALKVEPVG EDLGSPPPPA ENSTTRP00000015671/1-904 AINALSTDGS LDLGDGVPVK ARKTALDHSP SVALKVEPAG EDLGATPPTS ENSBTAP00000000859/1-914 AINALSTDSS LDLGDGVPVK ARKTTLDHSP AVALKVEPAG EDLGTTPPTP 401 450 bmy_16554T0/1-493 DFPPEEFPSF QHIRKGAFCD QYLSVPQHLY PWGLGSAVPR --SSTPAPAP BACU004431/1-1015 DFPPEEFPSF QHIRKGAFCD QYLSVPQHLY PW----ARPR --SPTSYTSP ENSP00000327850/1-930 DFAPEDYSSF QHIRKGGFCD QYLAVPQHPY QW----AKPK PLSPTSYMSP ENSTTRP00000015671/1-904 DFPPEEFPSF QHIRKGAFCD QYLSVPQHLY PW----ARPR --SPTSYTSP ENSBTAP00000000859/1-914 DFQPEEFAAF QHIRKGAFCD QYLSVPQHPY PW----ARPR --SPASYTSP 451 500 bmy_16554T0/1-493 ALPAF----- ---------- -----GNHAA SFSQETG--- --CLAGA--- BACU004431/1-1015 SLPALDWQLP SHSGPYELRI EVQPKSHHRA HYETEGSRGA VKALAGGHPS ENSP00000327850/1-930 TLPALDWQLP SHSGPYELRI EVQPKSHHRA HYETEGSRGA VKASAGGHPI ENSTTRP00000015671/1-904 SLPALDWQLP SHSGPYELRI EVQPKSHHRA HYETEGSRGA VKALAGGHPS ENSBTAP00000000859/1-914 SLPALDWQLP SHSGPYELRI EVQPKSHHRA HYETEGSRGA VKASAGGHPS 501 550 bmy_16554T0/1-493 ---------- ---------- ---------- ---------- ---------- BACU004431/1-1015 VQKISRV--- ---------- ---------- ---MFRTPGS HSTACDKHGL ENSP00000327850/1-930 VQLHGYLENE PLMLQLFIGT ADDRLLRPHA FYQVHRITGK TVSTTSHEAI ENSTTRP00000015671/1-904 VQLHGYMESE PLTLQLFIGT ADDRLLRPHA FYQVHRITGK TVSTTSHEAI ENSBTAP00000000859/1-914 VQLHGYVESE PLTLQLFIGT ADDRLLRPHA FYQVHRITGK TVSTASHEAV 551 600 bmy_16554T0/1-493 --------SA PPSPA----- ---------- ---------- ---------- BACU004431/1-1015 LNINRMLQNA PEMPTDTGHP CIDCAGILKL RNSDIELRKG ETDIGRKNTR ENSP00000327850/1-930 LSNTKVL-EI PLLPENSMRA VIDCAGILKL RNSDIELRKG ETDIGRKNTR ENSTTRP00000015671/1-904 LSNTKVL-EI PLLPENNMRA IIDCAGILKL RNSDIELRKG ETDIGRKNTR ENSBTAP00000000859/1-914 VCSTKVL-EI PLLPENNMRA TIDCAGILKL RNSDIELRKG ETDIGRKNTR 601 650 bmy_16554T0/1-493 --FLF----- --NG------ ---------- ---------- --VGAAGALL BACU004431/1-1015 VRLVFRVHVP QPNGRTLSLQ VASNPIECSQ RSAQELPLVE KQSAASGPVL ENSP00000327850/1-930 VRLVFRVHVP QPSGRTLSLQ VASNPIECSQ RSAQELPLVE KQSTDSYPVV ENSTTRP00000015671/1-904 VRLVFRVHVP QPNGRTLSLQ VASNPIECSQ RSAQELPLVE KQSAASGPVL ENSBTAP00000000859/1-914 VRLVFRVHIP QPNGRTLSLQ VASNPIECSQ RSAQELPLVE KQSAASGPVL 651 700 bmy_16554T0/1-493 G--------- ---------- ---------- ---------P LTQPRVFIFN BACU004431/1-1015 GGKRMVLSGH NFLQDSKVIF VEKAPDGHHI WEMEAKIDGA LCKPNSLVVE ENSP00000327850/1-930 GGKKMVLSGH NFLQDSKVIF VEKAPDGHHV WEMEAKTDRD LCKPNSLVVE ENSTTRP00000015671/1-904 GGKRMVLSGH NFLQDSKVIF VEKAPDGHHI WEMEAKIDGA LCKPNSLVVE ENSBTAP00000000859/1-914 GGKRMVLSGH NFLQDSKVIF VEKAPDGHHI WEMEAKTEGD LCKPNSLVVE 701 750 bmy_16554T0/1-493 ---------- ---------- ---------- ---------- ---------- BACU004431/1-1015 IPPFRNQRIT SPVQVNFYVC NGKRKRSQYQ HFTYLPANVP IIKTEPSDDY ENSP00000327850/1-930 IPPFRNQRIT SPVHVSFYVC NGKRKRSQYQ RFTYLPANVP IIKTEPTDDY ENSTTRP00000015671/1-904 IPPFRNQRIT SPVQVNFYVC NGKRKRSQYQ HFTYLPANVP IIKTEPSDDY ENSBTAP00000000859/1-914 IPPFRNQRIT SPVQVNFYVC NGKRKRSQYQ HFTYLPANVP IIKTEPSDDY 751 800 bmy_16554T0/1-493 ---------- ---------- ---------- ---------- ---------- BACU004431/1-1015 EPALTCGPMS QGLSPLPKPC YGQPLALPPD PGSCLVPGFP PRPQSSA--- ENSP00000327850/1-930 EPAPTCGPVS QGLSPLPRPY YSQQLAMPPD PSSCLVAGFP PCPQRSTLMP ENSTTRP00000015671/1-904 EPALTCGPMS QGLSPLPKPC YGQPLALPPD PGSCLAPGFP PRPQSSA--- ENSBTAP00000000859/1-914 EPALTCGPMS QGLSPLPKPC YGQPLALPPD PGACLMPGFP PRPQGSA--- 801 850 bmy_16554T0/1-493 ---------- ---------- ---------- ---------- ---------- BACU004431/1-1015 -----SPELH DLSCAPYGXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000327850/1-930 AAPGVSPKLH DLSPAAYT-- ---------- ---------- ---------- ENSTTRP00000015671/1-904 -----SPELH DLSCAPYG-- ---------- ---------- ---------- ENSBTAP00000000859/1-914 -----SPELH DLSCAPYG-- ---------- ---------- ---------- 851 900 bmy_16554T0/1-493 ---------- ---------- ---------- ---------- ---------- BACU004431/1-1015 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000327850/1-930 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015671/1-904 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000000859/1-914 ---------- ---------- ---------- ---------- ---------- 901 950 bmy_16554T0/1-493 ---------- ---------- ---------- ---------- ---------- BACU004431/1-1015 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000327850/1-930 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015671/1-904 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000000859/1-914 ---------- ---------- ---------- ---------- ---------- 951 1000 bmy_16554T0/1-493 ---------- ---------- ---------- ---------- ---------- BACU004431/1-1015 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000327850/1-930 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015671/1-904 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000000859/1-914 ---------- ---------- ---------- ---------- ---------- 1001 1050 bmy_16554T0/1-493 ---------- ---------- ---------- ---------- ---------- BACU004431/1-1015 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000327850/1-930 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015671/1-904 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000000859/1-914 ---------- ---------- ---------- ---------- ---------- 1051 1100 bmy_16554T0/1-493 ---------- ---------- ---------- ---------- ---------- BACU004431/1-1015 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XSTVRGAAQG ENSP00000327850/1-930 ---------- ---------- ---------- ---------- -KGVASPGHC ENSTTRP00000015671/1-904 ---------- ---------- ---------- ---------- -PATAGPGHG ENSBTAP00000000859/1-914 ---------- ---------- ---------- ---------- -SATAGPGHS 1101 1150 bmy_16554T0/1-493 ---------- ---------- ---------- ---------- ---------- BACU004431/1-1015 ELGAPGCAGP GRVEHGAPGS ---------- ---------- ---------- ENSP00000327850/1-930 HLGLPQPAGE APAVQDVPRP VATHPGSPGQ PPPALLPQQV SAPPSSSCPP ENSTTRP00000015671/1-904 PLGLPRPVGG VLAGQEAPRP AGVPPGPPQP PPPAPLQPQV SPPSSGSCSP ENSBTAP00000000859/1-914 PLGLPRPVGG VLASQEAPRP SGVPPGPPQP PPPTLLQPQV SPTSSGSCSP 1151 1200 bmy_16554T0/1-493 ---------- ---------- ---------- ---------- ---------- BACU004431/1-1015 ---------- ---------- ---------- ---------- ---------- ENSP00000327850/1-930 GLEHSLCPSS PSPPLPPATQ EPTCLQPCSP ACPPATGRPQ HLPSTVRRDE ENSTTRP00000015671/1-904 GCRPALCPHS PSSPLPPGTQ EPTR-QPCGP ARPPGTGHQQ QQPSEVPSSE ENSBTAP00000000859/1-914 GRRPALCPHS PSSPLPPGTR ELTRLQPCGP AHPCGTGHQQ HQPPEVPSSE 1201 1250 bmy_16554T0/1-493 ---------- ---------- ---------- ---------- ---------- BACU004431/1-1015 ---------- ---------- ---------- ---------- ---------- ENSP00000327850/1-930 SPTAGPRLLP EVHEDGSPNL APIPVTVKRE PEELDQLYLD DVNEIIRNDL ENSTTRP00000015671/1-904 PAAARPLPAP EVREDSNHSL APIPVTVKRE PQELDPLDLD DVNEIIRNDL ENSBTAP00000000859/1-914 PAAARPPPPP EVREDSNRSL APIPVTVKRE PQELDPLDLD DVNEIIRNDL 1251 1300 bmy_16554T0/1-493 ------- BACU004431/1-1015 ------- ENSP00000327850/1-930 SSTSTHS ENSTTRP00000015671/1-904 SSTNLHS ENSBTAP00000000859/1-914 SSTHIHS