KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:12:34 2014 Check: 00 .. Name: bmy_06192T0/1-1159 Len: 1344 Check: 3650 Weight: 1.00 Name: ENSBTAP00000000861/1-1012 Len: 1344 Check: 6478 Weight: 1.00 Name: ENSTTRP00000015343/1-969 Len: 1344 Check: 5719 Weight: 1.00 Name: ENSP00000306410/1-1044 Len: 1344 Check: 1841 Weight: 1.00 Name: BACU012981/1-905 Len: 1344 Check: 4403 Weight: 1.00 // 1 50 bmy_06192T0/1-1159 MSRGDEALLS VHDTVALKKY DPVLPPMPDD IDDEEDSVKI IRLVKNREPL ENSBTAP00000000861/1-1012 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015343/1-969 ---------- ---------- ---------- ---------- ---------- ENSP00000306410/1-1044 ---------- ---------- ---------- ---------- ---------- BACU012981/1-905 ---------- ---------- ---------- ---------- ---------- 51 100 bmy_06192T0/1-1159 GATIKKDDQT GAVVVARIMR GGAADRSGLI HVGDELREVN GIPVEDKSPE ENSBTAP00000000861/1-1012 ---------- MGVALTRSAQ WTAAGHGAKT ---------- -LEVTPLNEA ENSTTRP00000015343/1-969 ---------- ---------- ---------- ---------- ---------- ENSP00000306410/1-1044 ---------- MGVALRKLTQ WTAAGHGTGI ---------- -LEITPLNEA BACU012981/1-905 ---------- ---------- ---------- ---------- ---------- 101 150 bmy_06192T0/1-1159 EIIQILMFIK ALFDYDPNED KAIPCKEAGL SFKKGDILQI MSQDDATWWQ ENSBTAP00000000861/1-1012 IVKEIIMFVE SFIYKYPQEA N--------- ---------- ---------- ENSTTRP00000015343/1-969 ---------- ---------- ---------- ---------- ---------- ENSP00000306410/1-1044 ILKEIIVFVE SFIYKHPQEA K--------- ---------- ---------- BACU012981/1-905 ---------- ---------- ---------- ---------- ---------- 151 200 bmy_06192T0/1-1159 AKHEGDANPR AGLIPSKHFQ ERRLALRRPE TLVQPLKVSN RKSSGFRRSF ENSBTAP00000000861/1-1012 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015343/1-969 ---------- ---------- ---------- ---------- ---------- ENSP00000306410/1-1044 ---------- ---------- ---------- ---------- ---------- BACU012981/1-905 ---------- ---------- ---------- ---------- ---------- 201 250 bmy_06192T0/1-1159 RLSRKDKKTN KSMYECKKSD QYDTADVPTY EEVTPYRRQM NENYRLVVLV ENSBTAP00000000861/1-1012 ---------- ---------- ---------- ---------- ------YVFV ENSTTRP00000015343/1-969 ---------- ---------- ---------- ---------- ---------- ENSP00000306410/1-1044 ---------- ---------- ---------- ---------- ------FVFV BACU012981/1-905 ---------- ---------- ---------- ---------- ---------- 251 300 bmy_06192T0/1-1159 VCVYWALTPS PAPPGRRFSI PTLLCSVLPD ALHSPAQNHI LFKAWKSPVG ENSBTAP00000000861/1-1012 EPLEWKTNLD PSAFGS---- ---------- ---------- ---------- ENSTTRP00000015343/1-969 ---------- ---------- ---------- ---------- ---------- ENSP00000306410/1-1044 EPLEWNTSLA PSAFES---- ---------- ---------- ---------- BACU012981/1-905 ---------- ---------- ---------- ---------- ---------- 301 350 bmy_06192T0/1-1159 VGLNELKRKL LISDTQHYGV TVPHTTRPRR SQESDGVEYV FISKHLFETD ENSBTAP00000000861/1-1012 ---------- --------GY AVSGTTVKSE EADKNGEPLL YLS------- ENSTTRP00000015343/1-969 ---------- ---------- ---ETTVESE EADSNAQPLL FLS------- ENSP00000306410/1-1044 ---------- --------GY VVSETTVKSE EVDKNGQPLL FLS------- BACU012981/1-905 ---------- ---------- ---------- ---------- ---------- 351 400 bmy_06192T0/1-1159 VQNNKFIEYG EYKNNYY--- GTSIDSVRSV LAKNKVCLLD VQPHTVKHLR ENSBTAP00000000861/1-1012 VPQIKIRSFG QLSRMLYIAK NMKLKEAQAC IEANRNPVAK ILGLDYNIIS ENSTTRP00000015343/1-969 VPQIKIRSFG QLSRVLHIAT DAKLREAQAC IEXXXXXXXX XXXXXXXXXX ENSP00000306410/1-1044 VPQIKIRSFG QLSRLLLIAK TGKLKEAQAC VEANRDPIVK ILGSDYNTMK BACU012981/1-905 ---------- ---------- ---------- ---------- ----MINEIN 401 450 bmy_06192T0/1-1159 TLEFKPYVIF IKPPSIERLR ETRKNAKIIS SRDDQGAAKP FTAVLIRKLL ENSBTAP00000000861/1-1012 EKIGNSFVSN IL-------- -----DKITK DDDSESEIKM KIALQLKQLD ENSTTRP00000015343/1-969 X---XXXXXX XX-------- -----XXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000306410/1-1044 E---NSIALN IL-------- -----GKITR DDDPESEIKM KIAMLLKQLD BACU012981/1-905 E---DSSVLT IL-------- -----DKITK DDDPEGEIKM KIALLLKQLD 451 500 bmy_06192T0/1-1159 IVGTKYRMDL SWSCHPIRAN RNPIAKILGL DYNMINEINE DSSVLTILDK ENSBTAP00000000861/1-1012 L--HLLNHSL KHISLEIRLN PGTVKN---- DIELLKQFSG KGK-QTVLES ENSTTRP00000015343/1-969 X--XXXXXXX XXXXXEIRLN PGTVKN---- DIELLKRFSG KGE-KTVLDS ENSP00000306410/1-1044 L--HLLNHSL KHISLEISLS PMTVKK---- DIELLKRFSG KGN-QTVLES BACU012981/1-905 L--HLLNRSL KNVSLEIRLN PGTVKN---- DIELLKRFSG KGE-QTVLES 501 550 bmy_06192T0/1-1159 ITKDDDPEDY EFSNGCRAPP WRQIQGEICY VLVKPHDAET LCITCSKEGV ENSBTAP00000000861/1-1012 I---EYTSDY EFSNGCRAPP WRQIKGEICY VLVKPHDAET LCVTCSKEGV ENSTTRP00000015343/1-969 I---EYTSDY EFSNGCRAPP WRQIQGEICY VLVKPHDAET LCITCSKEGV ENSP00000306410/1-1044 I---EYTSDY EFSNGCRAPP WRQIRGEICY VLVKPHDGET LCITCSAGGV BACU012981/1-905 I---EYTSDY EFSNGCRAPP WRQIQGEICY VLVKPHDAET LCITCSKEGV 551 600 bmy_06192T0/1-1159 FLNGGKTDDE GEINYERKGE IYKDLVTLLR EKSAKFSENM SQQAERFDIR ENSBTAP00000000861/1-1012 FLNGGKTDDE GQINYERKGE IYKDLVTLLK EKSAIFSENM SKQEIKFSEQ ENSTTRP00000015343/1-969 FLNGXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXEVRSNEE ENSP00000306410/1-1044 FLNGGKTDDE GDVNYERKGS IYKNLVTFLR EKSPKFSENM SKLGISFSED BACU012981/1-905 FLNGGKTDDE EEINYERKGE IYKDLVTLLR EKSAKFSENM SQQEGRFNEE 601 650 bmy_06192T0/1-1159 QHFCAEHHRG ---RAQFTFM WSMSQGKXHV KNMMKHMEES HGKCKHCGR- ENSBTAP00000000861/1-1012 PQ--KDQPNE AP-KEEVAIT HKASVTSR-- KSTQEKNRIN LGRSQLTKRL ENSTTRP00000015343/1-969 QQKEKDQPNE AP-EEEAAAL RKASAASR-- GSALEKKQIS LGRSQMTKRL ENSP00000306410/1-1044 QQKEKDQLGK APKKEEAAAL RKDISGSD-- KRSLEKNQIN FWRNQMTKRW BACU012981/1-905 QQKEKDQPNE AP-EEEAAAL RKASTASR-- RSALEKKQIS LGRSQMTKRL 651 700 bmy_06192T0/1-1159 ---------- DLIKNKSSLR DXQEEKHGGR LEKSRPSTSS GRAQLIRKSA ENSBTAP00000000861/1-1012 EPSLNWRTSV SSK-DRNTLR DTQVEKHGGK LEKSRSSVSP GRAQLIRKSV ENSTTRP00000015343/1-969 EPSLNWKTIL FDAKNKSSLR DTQEEKHGGR LEKSRPSTSS GKAQLIRKSV ENSP00000306410/1-1044 EPSLNWKTTV NYK-GKGSAK EIQEDKHTGK LEKPRPSVSH GRAQLLRKSA BACU012981/1-905 EPSLNWKTTV DAKENKSSLR DTQEEKHGGR LEKSRPSASP GRAQLLRKSA 701 750 bmy_06192T0/1-1159 EKIEEIISES SSESEEDEEP PDHLQEANAD LPSEYWQIQK LVKYLKGGNQ ENSBTAP00000000861/1-1012 EKIEEIISDS SSESEEDEEQ PDHRQEANAD LPSEYWQIQK LVKYLKGGNQ ENSTTRP00000015343/1-969 EKIEEIISES SSESEEDEEP PDHLQETNAD LPSEYWQIQK LVKYLKGGNQ ENSP00000306410/1-1044 EKIEETVSDS SSESEEDEEP PDHRQEASAD LPSEYWQIQK LVKYLKGGNQ BACU012981/1-905 EKIEEIISES SSESEEDEEP PDHLQEANAD LPSEYWQIQK LVKYLKGGNQ 751 800 bmy_06192T0/1-1159 TATVIALCSM KDFNLAQETC QLAIRDVGGL EVLINLLETD EVKCKIGSLK ENSBTAP00000000861/1-1012 TATVIALCSM KDFNLAQETC QLAIRDVGGL EVLINLLETD EVKCKIGSLK ENSTTRP00000015343/1-969 TATVIALCCM QDFNLAQETC QLAIRDVGGL EVLINLLETD EVKCKIGSLK ENSP00000306410/1-1044 TATVIALCSM RDFSLAQETC QLAIRDVGGL EVLINLLETD EVKCKIGSLK BACU012981/1-905 TATVIALCSM KDFNLAQETC QLAIRDVGGL EVLINLLETD EVKCKIGSLK 801 850 bmy_06192T0/1-1159 ILKEISHNPQ IRRNIVDLGG LPVMVNILDS PHKSLKCLAA ETIANVAKFR ENSBTAP00000000861/1-1012 ILKEISHNPQ IRRNIVDLGG LPVMVNILDS PHKSLKCLAA ETIANVAKFR ENSTTRP00000015343/1-969 ILKEISHNPQ IRRNIVDLGG LPVMVNILDS PHKSLKCLAA ETIANVAKFR ENSP00000306410/1-1044 ILKEISHNPQ IRQNIVDLGG LPIMVNILDS PHKSLKCLAA ETIANVAKFK BACU012981/1-905 ILKEISHNPQ IRRNIVDLGG LPVMVNILDS PHKSLKCLAA ETIANVAKFR 851 900 bmy_06192T0/1-1159 RAWRAVRRHG GITKLVALLD CRQHSTEPAQ PGLYEACDGE VARCGALALW ENSBTAP00000000861/1-1012 RARRVVRRHG GITKLVALLD CGKHSGEPAQ SSLYETRDVE VARCGALALW ENSTTRP00000015343/1-969 RAWRAVRRHG GITKLVALLD CSQHATEPAE RSLYEADDGE VARCGALALW ENSP00000306410/1-1044 RARRVVRQHG GITKLVALLD CAHDSTKPAQ SSLYEARDVE VARCGALALW BACU012981/1-905 RAWRAVRRHG GITKLVALLD CRQPSAEPAQ PGLHEARDGE VARCGALALW 901 950 bmy_06192T0/1-1159 SCSKSYANKE AIRRAGGIPL LARLLKTSHE NMLIPVVGTL QECASE---- ENSBTAP00000000861/1-1012 SCSKSYANKE AIRKAGGIPL LARLLKTSHE NMLIPVVGTL QECASEENYR ENSTTRP00000015343/1-969 SCSKSYANKE AIRRAGGIPL LARLLKTSHE NMLIPVVGTL QECASEENYR ENSP00000306410/1-1044 SCSKSHTNKE AIRKAGGIPL LARLLKTSHE NMLIPVVGTL QECASEENYR BACU012981/1-905 SCSKSCANKE AIRRAGGIPL LARLLKTSRE DMLIPVVATL QECASEENYR 951 1000 bmy_06192T0/1-1159 ---------- ---------- ---------- ---CAEDEET RDLVRLRGGL ENSBTAP00000000861/1-1012 AAIKAERIIE NLVKNLNSEN EQLQEHCAMA IYQCAEDEET RDLVRLHGGL ENSTTRP00000015343/1-969 AAIKAERIIE TLVKKLNSEN KQLQKHCAMA IYQCAEDEET RELVRLHGGL ENSP00000306410/1-1044 AAIKAERIIE NLVKNLNSEN EQLQEHCAMA IYQCAEDKET RDLVRLHGGL BACU012981/1-905 AAIKAERIIE NLVKNLSSEN KQLQEHCAMA ICQCAEDEET RDLVRLRGGL 1001 1050 bmy_06192T0/1-1159 KPLASLLSNT DNKERLAAVT GAIWKCSISK ENVTKFREYK AIEALVGLLT ENSBTAP00000000861/1-1012 KPLASLLNNT DNKERLAAVT GAIWKCSISK ENVTKFREYK AIETLVGLLT ENSTTRP00000015343/1-969 RALASLLSNT DNKERLAAVT GATWKCSTSK ENVTKFREYK AIEALVELLT ENSP00000306410/1-1044 KPLASLLNNT DNKERLAAVT GAIWKCSISK ENVTKFREYK AIETLVGLLT BACU012981/1-905 RPLASLLSNT DNKERLAAVT GAIWKCSISK ENVTKFREYK AIEALVGLLT 1051 1100 bmy_06192T0/1-1159 DQPEEVLVNA VGALGECCQE PEGRVTVRKH GGIQPLVDLL VGTNRALLVN ENSBTAP00000000861/1-1012 DQPEEVLVNV VGALGECCQE HENRVIIRRC GGIQPLVNLL VGINQALLVN ENSTTRP00000015343/1-969 DQPEEVLVNV VGALGECCRE SEGRVTVRKR GGVQPLVDLL VGTNRALLVN ENSP00000306410/1-1044 DQPEEVLVNV VGALGECCQE RENRVIVRKC GGIQPLVNLL VGINQALLVN BACU012981/1-905 DQPEEVLVNA VGALGECCQE PEGRVTVRKR GGLQPLVDLL VGTNRALLVN 1101 1150 bmy_06192T0/1-1159 VTKAVGACAV EPESMI---- ---------- ---------- ---------- ENSBTAP00000000861/1-1012 VTKAVGACAV EPESMMIIDR LDGVRLLWSL LKNPHPDVKA SAAWALCPCI ENSTTRP00000015343/1-969 VTKAIGACAL EPESMAIIDH LDGVRLLWSL LKNPHPDVKA SAAWALCPCI ENSP00000306410/1-1044 VTKAVGACAV EPESMMIIDR LDGVRLLWSL LKNPHPDVKA SAAWALCPCI BACU012981/1-905 VTKAVGACAV EPESMMIIDH LDGVRLLWSL LKNPHPDVKA SAAWALCPCI 1151 1200 bmy_06192T0/1-1159 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000000861/1-1012 QNAKESKRNK QSFIKGGVES VKGVLKSRDI TLLAKVCIVK TMNIPEHEDS ENSTTRP00000015343/1-969 QNAKDAGEMV RSFV-GGLEL VVNLLKSDNK EVLASVCAAI T-NIAKDQEN ENSP00000306410/1-1044 KNAKDAGEMV RSFV-GGLEL IVNLLKSDNK EVLASVCAAI T-NIAKDQEN BACU012981/1-905 QNAKDAGEMV RSFV-GGLEL VVNLLKSDNK EVLASVCAAI T-NIAKDQEN 1201 1250 bmy_06192T0/1-1159 ---------- ---------- ---------- ---------- NRVAFGEHKA ENSBTAP00000000861/1-1012 LQVLVPHNLD FFINRIASKN NDKLRRHLAE TISRCCMWGR NRVAFGEHKA ENSTTRP00000015343/1-969 LAVITDHGVV PLLSKLANTN DDTLRRHLAE AISRCCMWGR NRVAFGEHKA ENSP00000306410/1-1044 LAVITDHGVV PLLSKLANTN NNKLRHHLAE AISRCCMWGR NRVAFGEHKA BACU012981/1-905 LAVITDHGVV PLLSKLANTN NDKLRRHLAE AISRCCMWGR NRVAFGKHKA 1251 1300 bmy_06192T0/1-1159 VAPLVRNLKS NDTNVHRATA QALYQLSEDA DNCITMHENG AVKEAFWKKK ENSBTAP00000000861/1-1012 VAPLVRYLKS NDTNVHRATA QALYQLSEDA DNCVTMHENG AVK------- ENSTTRP00000015343/1-969 VAPLVRYLKS NDTNVHRATA QALYQLSEDA DNCITMHENG AVK------- ENSP00000306410/1-1044 VAPLVRYLKS NDTNVHRATA QALYQLSEDA DNCITMHENG AVK------- BACU012981/1-905 VAPLVRNLKS NDTSVHRATA QALHQLSEDA DNCITMHENG AVK------- 1301 1350 bmy_06192T0/1-1159 DYRGCVIIEG EDAPISITLD DTKPDGPLPA IMGFILA--- ---- ENSBTAP00000000861/1-1012 -----VLL-- ---------- ---------- ---------- ---- ENSTTRP00000015343/1-969 -----LLLRM VGSPDQELQE AA--AGCISN IRRLALATEK ARYH ENSP00000306410/1-1044 -----LLLDM VGSPDQDLQE AA--AGCISN IRRLALATEK ARYT BACU012981/1-905 -----LLLHM VGSPDQDLQE AA--AGCISN IRRLALATEK ASYT