KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:12:35 2014 Check: 00 .. Name: ENSP00000217429/1-615 Len: 617 Check: 9781 Weight: 1.00 Name: ENSBTAP00000000862/1-581 Len: 617 Check: 1115 Weight: 1.00 Name: ENSTTRP00000007278/1-587 Len: 617 Check: 9562 Weight: 1.00 Name: bmy_16208T0/1-418 Len: 617 Check: 7829 Weight: 1.00 Name: BACU015497/1-417 Len: 617 Check: 5500 Weight: 1.00 // 1 50 ENSP00000217429/1-615 MARACLIQRL PIKRDCTPVF VRGLSSPSAA MALLSEGLDE VPAACLSPCG ENSBTAP00000000862/1-581 ---------- ---------- ---------- MALRYDGLDE LPAACLSPCG ENSTTRP00000007278/1-587 MARAGIQRPI ---KSCAPVV VRAVLCQSVA MALRSDGLDE LPAACLSPCG bmy_16208T0/1-418 ---------- ---------- ---------- ---------- ---------- BACU015497/1-417 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000217429/1-615 PPNPTELFSE SRRLALEELV AGGPEAFAAF LRRERLARFL NPDEVHAILR ENSBTAP00000000862/1-581 PPNPAELYSE ERRLALEELL AGGPDAFSAF LRRERLGRFL NPDEVRSILR ENSTTRP00000007278/1-587 PPNPAELYSE ERRLALEELV AGGPDAFAAF LRRERLGRFL NPDEVRAILG bmy_16208T0/1-418 ---------- ---------- ---------- ---------- ---------- BACU015497/1-417 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000217429/1-615 AAERPGEEGA AAAAAAEDSF GSSHDCSSGT YFPEQSDLEP PLLELGWPAF ENSBTAP00000000862/1-581 AAERPGEEG- -AAAGAEDSF GSSHDCSSGT YFPEQSDLEP PLLELGWPAF ENSTTRP00000007278/1-587 AAERPGEEG- -AAAGAEDSF GSSHDCSSGT YFPEQSDLEP PLLELGWPSF bmy_16208T0/1-418 ---------- ---------- ---------- ---------- ---------- BACU015497/1-417 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000217429/1-615 YQGAYRGATR VETHFQPRGA GEGGPYGCKD ALRQQLRSAR EVIAVVMDVF ENSBTAP00000000862/1-581 YQGAYRGATR VEAHFQPRGA GAGGPYGCKD ALRQQLRLAR EVIAVVMDVF ENSTTRP00000007278/1-587 YKGAYRGATR VEAHFQPRGT GARGPYGCKD ALRQQLRSAR EVIAVVMDVF bmy_16208T0/1-418 ---------- ---------- ---------- ---------- ------MDVF BACU015497/1-417 ---------- ---------- ---------- ---------- ------MDVF 201 250 ENSP00000217429/1-615 TDIDIFRDLQ EICRKQGVAV YILLDQALLS QFLDMCMDLK VHPEQEKLMT ENSBTAP00000000862/1-581 TDIDIFRDLQ EISRKQGVAV YILLDQALLS QFLDMCMDLK VHPEEEKLMT ENSTTRP00000007278/1-587 TDIDIFRDLQ EICRKQGVAV YILLDQALLS QFLDMCMDMK VHPEEEKLMT bmy_16208T0/1-418 TDIDIFRDLQ EICRKQGVAV YILLDXALLS QFLDMCMDMK VHPEEEKLMT BACU015497/1-417 TDIDIFRDLQ EICRKQGVAV YILLDQALLS QFLDMCMDMK VHPEEEKLMT 251 300 ENSP00000217429/1-615 VRTITGNIYY ARSGTKIIGK VHEKFTLIDG IRVATGSYSF TWTDGKLNSS ENSBTAP00000000862/1-581 VRTITGNIYY ARSGTKIVGK VHEKFTLIDG IRVATGSYSF TWTDGKLNSS ENSTTRP00000007278/1-587 VRTITGNIYY ARSGTKIVGK VHEKFTLIDG IRVATGSYSF TWTDGKLNSS bmy_16208T0/1-418 VRTITGNIYY ARSGTKIVGK VHEKFTLIDG IRVATGSYSF TWTDGKLNSS BACU015497/1-417 VRTITGNIYY TRSGTKIVGK VHEKFTLIDG IRVATGSYSF TWTDGKLNSS 301 350 ENSP00000217429/1-615 NLVILSGQVV EHFDLEFRIL YAQSKPISPK LLSHFQSSNK FDHLTNRKPQ ENSBTAP00000000862/1-581 NLVILSGQVV EHFDLEFRIL YAQSKPISSK LLSSFRISGR FDHLVDQKPL ENSTTRP00000007278/1-587 NLVILSGQVV EHFDLEFRIL YAQSKPISPK RLSSFRISGR FDHLINQKPL bmy_16208T0/1-418 NLVILSGQVV EHFDLEFRIL YAQSKPISSK LLSSFRISGR FDHLVDQKPL BACU015497/1-417 NLVILSGQVV EHFDLEFRIL YAQSKPISSK LLSSFRISGR FDHLIEQKPL 351 400 ENSP00000217429/1-615 SKELTLGNLL RMRLARLSST PRKADLDPEM PAEGKAERKP HDCESSTVSE ENSBTAP00000000862/1-581 SKELTLGNLL RLRLARLSST PRKVELGGE- --EGRAEAVC GASKTSTISE ENSTTRP00000007278/1-587 CKELTLGNLL RLRLARLSSS PRKAEPGCE- --EGQAEAGR EDSEASTISE bmy_16208T0/1-418 CKELTLGNLL RLRLARLSST PRKAEPGCE- --EGQAEAGR EDSEASTISE BACU015497/1-417 CKELTLGSLL RLRLARLSST PRKAEPGGE- --EGRAEAGC EDSAASTISE 401 450 ENSP00000217429/1-615 EDYFSSHRDE LQSRKAIDAA TQTEPGEEMP GLSVSEVGTQ TSITTACAGT ENSBTAP00000000862/1-581 EDYFSSRKDR LEGRRVTDAA TQTEPG-ETP AVSMSDVGTQ ASAATACTGT ENSTTRP00000007278/1-587 EGCFSSRRDR LEGGRATDAT TQTEPGEETP ALSMSDVGTQ ASMATACTG- bmy_16208T0/1-418 EDGLSSRRDR PEGGRATDAT TQTEAGEETP AVSMSDVGTQ ASMATACTGT BACU015497/1-417 EDGFSSRRDR PEGGRATDAT TQTEPGEETP AVSMSDVGTQ ASMATACTGT 451 500 ENSP00000217429/1-615 QTAVITRIAS SQTTIWSRST TTQTDMDENI LFPRGTQSTE GSPVSKMSVS ENSBTAP00000000862/1-581 QTTVATRVVS SQTVVPTTSA TTQTDVDEGV LASPGSQSKE GSPVSKMSVS ENSTTRP00000007278/1-587 ---------- ---------- -TQTDMDENV LSFLGTQAKE GSAVSKTSVS bmy_16208T0/1-418 QTAVATRVVS SQTAVQTTSA TTQTDMDENV LSFLGTQAKE GSEVSKMSVS BACU015497/1-417 QTAVATRVVS SQTAVQTASA TTQTDMDENV LSFLGTLAKE GSAVSKVSVS 501 550 ENSP00000217429/1-615 RSSSLKSSSS VSSQGSVASS TGSPASIRTT DFHNPGYPKY LGTPHLELYL ENSBTAP00000000862/1-581 RSSSLRSSSS LSSQGSVASS IGSQTSFRST DFATPGPPKY QSTPHFDLCF ENSTTRP00000007278/1-587 RSSSLRSSAS LSSQGSVASS IGSQTSLRAN DVVTAGHPKY WSTPHLDLCS bmy_16208T0/1-418 RSSSLRSSAS LSSQGSVASS IGSQTSLRAN DVVTPGHPKY WSTPHLDLCS BACU015497/1-417 RSSSLRSSAS LSSQGSVASS IGSQTSLRAN DV-TPGHPKY WSTPHLDLCS 551 600 ENSP00000217429/1-615 SDSLRNLNKE RQFHFAGIRS RLNHMLAMLS RRTLFTENHL GLHSGNFSR- ENSBTAP00000000862/1-581 RDSLRNLNKE RQFHFAGIRS RLNHMLAMLS RKTFLTENYL SFNSGSFARS ENSTTRP00000007278/1-587 RDSLRKLNKE RQIHFAGIRS RLNHALAMLS RRTFLTENYL SFNSGSFPRS bmy_16208T0/1-418 RDSFRKLNKE RQFHFAGIRS RLNHVLAMLS RRTFLTENYL SFNSGSFARS BACU015497/1-417 RDSFRKLNKE RQFHFAGIRS RLNHVLAMLS RRTFLTENYV SFNSGSFARS 601 650 ENSP00000217429/1-615 -VNLLAVRDV ALYPSYQ ENSBTAP00000000862/1-581 SANLLAVREI MLYPSYQ ENSTTRP00000007278/1-587 SANLLAVREI TLYPSSQ bmy_16208T0/1-418 SANLLAVREI TLYPSYQ BACU015497/1-417 SANLLAVREI TLYPSYQ