KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:12:40 2014 Check: 00 .. Name: ENSTTRP00000001357/1-475 Len: 716 Check: 7196 Weight: 1.00 Name: BACU005547/1-572 Len: 716 Check: 7920 Weight: 1.00 Name: ENSP00000232888/1-475 Len: 716 Check: 4662 Weight: 1.00 Name: ENSBTAP00000000891/1-475 Len: 716 Check: 7263 Weight: 1.00 Name: bmy_11541T0/1-451 Len: 716 Check: 8094 Weight: 1.00 // 1 50 ENSTTRP00000001357/1-475 ---------- ---------- ---------- ---------- ---MSATGAV BACU005547/1-572 ---------- ---------- ---------- ---------- ---MSATGAA ENSP00000232888/1-475 ---------- ---------- ---------- ---------- ---MSATAAA ENSBTAP00000000891/1-475 ---------- ---------- ---------- ---------- ---MSATRAA bmy_11541T0/1-451 MEPWEAGSTG RWEPILAWSL VGRPGFSRHV SSPGVAATHT VGSMSATGAA 51 100 ENSTTRP00000001357/1-475 RKRGKPASGA GAGAGAGKLR RKGDSSGDKG KSKGGGKMNE EISSDSETEX BACU005547/1-572 RKRGKPASGA GAGAGAGKLR RK-------- ---------- ---------- ENSP00000232888/1-475 RKRGKPASGA GAGAGAGKRR RKADSAGDRG KSKGGGKMNE EISSDSESES ENSBTAP00000000891/1-475 RKRGKPASGA GAGAEAFKRR RKGDSSGDKV KSKGGGKMNE EISSDSESES bmy_11541T0/1-451 RKRGKPASGA GAGAGAGKLR RKGDSSGDKG KSKGGGKMNE EISSDSESES 101 150 ENSTTRP00000001357/1-475 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXEEK AEAREFEEDQ BACU005547/1-572 ---------- ---------- ---------- ---------- ---------- ENSP00000232888/1-475 LAPRKPEEEE EEELEETAQE KKLRLAKLYL EQLRQQEEEK AEARAFEEDQ ENSBTAP00000000891/1-475 LALRRTEEEE EEELEETAQE KKLRLAKVYL EQLRQQEEEK AEAREFEEDQ bmy_11541T0/1-451 LVPRRTEEEE EEELEETAQE KKLRLAKLYL EQLKQQEEEK AEAREFEEDQ 151 200 ENSTTRP00000001357/1-475 VAGRLKEDVL EQRGRLQKSV AKEIQAPDPA DIRILRGHQL SITCLVITPD BACU005547/1-572 ---------- ---------- ---IQAPDPA DFRILRGHQL SITCLVITPD ENSP00000232888/1-475 VAGRLKEDVL EQRGRLQKLV AKEIQAPASA DIRVLRGHQL SITCLVVTPD ENSBTAP00000000891/1-475 VAGRLKEDVL EQRGRLQKSV AKEIQAPDPA DIRILRGHQL SITCLVVTPD bmy_11541T0/1-451 VAGRLKEDVL EQRGRLQKSV AKEIQAPDPA DIRILRGHQL SITCLVITPD 201 250 ENSTTRP00000001357/1-475 DLAIFSAAKD CTIIKWSVES GRKLHVIPRA KKGAEGQPSG HSSHVLCMAI BACU005547/1-572 DLAIFSASKD CTIIKWSVES GWKLHVIPRA KKGAEGQPSG HSSHVLCMAI ENSP00000232888/1-475 DSAIFSAAKD CSIIKWSVES GRKLHVIPRA KKGAEGKPPG HSSHVLCMAI ENSBTAP00000000891/1-475 DLAIFSAAKD CTIIKWSVES GRKLHVIPRA KKGTEGQPPG HSTHVLCMAI bmy_11541T0/1-451 DLAIFSASKD CTIIKWSVES GRKLHVIPRA KKGAEGQPSG HSSHVLCMAI 251 300 ENSTTRP00000001357/1-475 SSDGKYLASG DRSKLILIWE XXXXXXXXXX XXXXXXXXGI AYRRGTHQLY BACU005547/1-572 SSDGKYLASG DRSKLILIWE AQSCQHLYTF TGHRDAVSGL AFRRGTHQLY ENSP00000232888/1-475 SSDGKYLASG DRSKLILIWE AQSCQHLYTF TGHRDAVSGL AFRRGTHQLY ENSBTAP00000000891/1-475 SSDGKYLASG DRSKLILIWE AQSCQHLYTF TGHRDAVSGL AFRRGTHQLY bmy_11541T0/1-451 SSDGN----- ---------- ---------- ---------- ---------- 301 350 ENSTTRP00000001357/1-475 STSHDRSVKV WNVGENSYVE TLFGHQDAVA ALDALSRECC VTAGGRDGTV BACU005547/1-572 STSHDRSVKV WNVAENSYVE TLFGHQDAVA ALDALSRECC VTAGGRDGTV ENSP00000232888/1-475 STSHDRSVKV WNVAENSYVE TLFGHQDAVA ALDALSRECC VTAGGRDGTV ENSBTAP00000000891/1-475 STSHDRSVKV WNVAENSYVE TLFGHQDAVA ALDALSRECC VTAGGRDGTV bmy_11541T0/1-451 ---------- ---------- --FGHQDAVA ALDALSRECC VTAGGRDGTV 351 400 ENSTTRP00000001357/1-475 RVWKIPEESQ LVFYGHQGSI DSIQLINEEH MVSGADDGSV ALWGLSKKRP BACU005547/1-572 RVWKIPEESQ LVFYGHQGSI DSIQLINEEH MVSGADDGSV ALWGLSKKRP ENSP00000232888/1-475 RVWKIPEESQ LVFYGHQGSI DCIHLINEEH MVSGADDGSV ALWGLSKKRP ENSBTAP00000000891/1-475 RVWKIPEESQ LVFYGHQGSI DSIQLINEEH MVSGADDGSV ALWGLSKKRP bmy_11541T0/1-451 RVWKIPEESQ LVFYGHQGSI DSIQLINEEH MVSGADDGSV ALWGLSKKRP 401 450 ENSTTRP00000001357/1-475 LALQREAHGL RGELGLEQPF WVSSVAALLN TDLVATGSHS NSVRLWQCGE BACU005547/1-572 LALQREAHGL RGELGLEQPF WVSSVAALLN TDLVATGSHS NSVRLWQCGE ENSP00000232888/1-475 LALQREAHGL RGEPGLEQPF WISSVAALLN TDLVATGSHS SCVRLWQCGE ENSBTAP00000000891/1-475 LALQREAHGL RGEPGLEQPF WVSSVAALLN TDLVATGSHN NSVRLWQCGE bmy_11541T0/1-451 LALQREAHGL RGELGLEQPF WVSSVAALLN TDLVATGSHS NSVRLWQCGE 451 500 ENSTTRP00000001357/1-475 GFRQLDLLCN IPLVG----- ---------- ----FINSLK FSSAGDFLVA BACU005547/1-572 GFRQLDLLCD IPLVGFINSL KFSSAGDFLV AGVGFINSLK FSSAGDFLVA ENSP00000232888/1-475 GFRQLDLLCD IPLVG----- ---------- ----FINSLK FSSSGDFLVA ENSBTAP00000000891/1-475 GFRQLDLLYD IPLVG----- ---------- ----FVNSLK FSSAGDFLVA bmy_11541T0/1-451 GFRQLDLLCD IPLVG----- ---------- ----FINSLK FSSSGDFLVA 501 550 ENSTTRP00000001357/1-475 GVGQEHRLGR ---------- ---------- ---------- ---------- BACU005547/1-572 GVGQEHRVSP QRLSVDPFRE EWEEEKKGGE KDQPKTINEY TKNEPQQNEE ENSP00000232888/1-475 GVGQEHRLGR ---------- ---------- ---------- ---------- ENSBTAP00000000891/1-475 GVGQEHRLGR ---------- ---------- ---------- ---------- bmy_11541T0/1-451 GVGQEHRLGR ---------- ---------- ---------- ---------- 551 600 ENSTTRP00000001357/1-475 ---------- ---------- ---------- --------WW RIKEARNSVC BACU005547/1-572 LILKSLPPAP SPNLEKAEIP RTQNRPPISN PEVVKVQAWW RGTLVRSTLL ENSP00000232888/1-475 ---------- ---------- ---------- --------WW RIKEARNSVC ENSBTAP00000000891/1-475 ---------- ---------- ---------- --------WW RIKEARNSVC bmy_11541T0/1-451 ---------- ---------- ---------- --------WW RIKEARNSIC 601 650 ENSTTRP00000001357/1-475 IIPLH----- ---------- ---------- ---------- ---------- BACU005547/1-572 YVAFRVWIIQ GWWRHKLVKL LENRRRTALE NFTRKEWAAV RLQSWVRMWR ENSP00000232888/1-475 IIPLR----- ---------- ---------- ---------- ---------- ENSBTAP00000000891/1-475 IIPLR----- ---------- ---------- ---------- ---------- bmy_11541T0/1-451 IIPLH----- ---------- ---------- ---------- ---------- 651 700 ENSTTRP00000001357/1-475 ---------- ---------R APRPPTAGS- ---------- ---------- BACU005547/1-572 IRWRYCRLLN AARIIQAYWR CQSCASQGFT KGHYRVTANQ LHLELEVLLG ENSP00000232888/1-475 ---------- ---------R VPVPPAAGS- ---------- ---------- ENSBTAP00000000891/1-475 ---------- ---------R APRPPAAGS- ---------- ---------- bmy_11541T0/1-451 ---------- ---------R APRPPAAGS- ---------- ---------- 701 750 ENSTTRP00000001357/1-475 ---------- ------ BACU005547/1-572 SGPCIVTECV PLPIKQ ENSP00000232888/1-475 ---------- ------ ENSBTAP00000000891/1-475 ---------- ------ bmy_11541T0/1-451 ---------- ------