KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:12:42 2014 Check: 00 .. Name: ENSP00000425809/1-570 Len: 571 Check: 9970 Weight: 1.00 Name: ENSBTAP00000000902/1-542 Len: 571 Check: 3270 Weight: 1.00 Name: ENSTTRP00000007413/1-543 Len: 571 Check: 2916 Weight: 1.00 Name: bmy_19009T0/1-405 Len: 571 Check: 3292 Weight: 1.00 Name: BACU019366/1-543 Len: 571 Check: 6900 Weight: 1.00 // 1 50 ENSP00000425809/1-570 MGGEWGQSAI CPESAQEWTY QVGQHLVDMD LGAITKYSAL HAKPNGLILQ ENSBTAP00000000902/1-542 ---------- ---------- --------MD LDAVTKQSVL HAKPDGLILQ ENSTTRP00000007413/1-543 ---------- ---------- --------MD LDAVTKQSAL HAKPDGLTLQ bmy_19009T0/1-405 ---------- ---------- --------MD LDAVTKQSAL HAKPDGLTLQ BACU019366/1-543 ---------- ---------- --------MD LDAVTKQSAL HAKPDGLTLQ 51 100 ENSP00000425809/1-570 YGTAGFRTKA EHLDHVMFRM GLLAVLRSKQ TKSTIGVMVT ASHNPEEDNG ENSBTAP00000000902/1-542 YGTAGFRTKA EHLDHVMFRM GLLAVLRSKQ TKSTIGVMVT ASHNPEEDNG ENSTTRP00000007413/1-543 YGTAGFRTKA EHLDHVMFRM GLLAVLRSKQ TKSTIGVMVT ASHNPEEDNG bmy_19009T0/1-405 YGTAGFRTKA EHLDHVMFRM GLLAVLRSKQ TKSTIGVMVT ASHNPEEDNG BACU019366/1-543 YGTAGFRTKA EHLDHVMFRM GLLAVLRSKQ TKSTIGVMVT ASHNPEEDNG 101 150 ENSP00000425809/1-570 VKLVDPLGEM LAPSWEEHAT CLANAEEQDM QRVLIDISEK EAVNLQQDAF ENSBTAP00000000902/1-542 VKLVDPLGEM LAASWEEHAT CLANAEEQHL PRVLVDISEK AAVDLHQDAF ENSTTRP00000007413/1-543 VKLVDPLGEM LAPSWEEHAT CLANAEEQDL PRVLVDIGEK AAVNLHQDAF bmy_19009T0/1-405 VKLVDPLGEM LAPSWEEHAT CLANAEEPDL PRVLVDISEK AAVNLHQDAF BACU019366/1-543 VKLVDPLGEM LAQSWEEHAT CLANAEEPDL PRVLVDIGEK AAVNLHQDAF 151 200 ENSP00000425809/1-570 VVIGRDTRPS SEKLSQSVID GVTVLGGQFH DYGLLTTPQL HYMVYCRNTG ENSBTAP00000000902/1-542 VVIGRDTRPS SERLSQSVID GVTVLGGQFY DYGLLTTPQL HYMVFCRNSN ENSTTRP00000007413/1-543 VVIGRDTXXX XXXXXXXXXX XXXXXXXXXX XYGLLTTPQL HYMVYCRNTS bmy_19009T0/1-405 VVIGRDTRPS SEKLSQSVID GVTVLGGQFH DYGLLTTPQL HYMVCCRNTS BACU019366/1-543 VVIGRDTRPS SEKLSQSVID GVTVLGGQFH DYGLLTTPQL HYMVYCRNTS 201 250 ENSP00000425809/1-570 GRYGKATIEG YYQKLSKAFV ELTKQASCSG DEYRSLKVDC ANGIGALKLR ENSBTAP00000000902/1-542 GQYGKATVEG YYQKLSSAFV ELTKQAFCRG DDHRTLKVDC ANGIGALKLA ENSTTRP00000007413/1-543 GQYGKATIEG YYQKLSAAFV ELTKQASCSG DGQRTLKVDC ANGIGALKLR bmy_19009T0/1-405 GQYGKATIEG YYQKLSAAFV ELTKQAFCSG DDQRTLKVDC ANGIGALKLR BACU019366/1-543 GRYGKATIEG YYQKLSTAFV ELTKQTFCSG DDQRTLKVDC ANGIGALKLR 251 300 ENSP00000425809/1-570 EMEHYFSQGL SVQLFNDGSK GKLNHLCGAD FVKSHQKPPQ GMEIKSNERC ENSBTAP00000000902/1-542 EMKHYFSPGL SVQLFNDGTK GKLNHLCGAD FVKSHQKPPQ GIEMRANERC ENSTTRP00000007413/1-543 EMKHYFSQGL SVQLFNDGTK GKLNHLCGAD FVKSHQKPPQ GIEMKSNERC bmy_19009T0/1-405 EMKHYFSQGL SVQLFNDGTK GKLNHLCGAD FVKSHQKPPQ ---------- BACU019366/1-543 EMKHYFSQGL SVQLFNDGTK GKLNHLCGAD FVKSHQKPPQ GIEMKSNERC 301 350 ENSP00000425809/1-570 CSFDGDADRI VYYYHDADGH FHLIDGDKIA TLISSFLKEL LVEIGESLNI ENSBTAP00000000902/1-542 CSFDGDADRI VYYYHDADGQ FHLIDGDKIA TLISSFLKEL LLEIGDGLSL ENSTTRP00000007413/1-543 CSFDGDADRI IYYYHDADGQ FHLVDGDKIA ALISSFLKEP LLEIGDSLSL bmy_19009T0/1-405 ---------- VF-------- ---------- ---------- -------VNA BACU019366/1-543 CSFDGDADRI VYYYHDADGQ FHLVDGDKIA ALISSFLKEP LLEIGDSLSL 351 400 ENSP00000425809/1-570 GVVQTAYANG SSTRYLEEVM KVPVYCTKTG VKHLHHKAQE FDIGVYFEAN ENSBTAP00000000902/1-542 GVVQTAYANG SSTRYLEEVM KVPVYCTKTG VKHLHHKAQE FDIGVYFEAN ENSTTRP00000007413/1-543 GVVQTAYANG SSTRYLEEVM KVPVYCTKTG VKHLHHKAQE FDIGVYFEAN bmy_19009T0/1-405 GTLRVSYT-- ---------- ---------- ---------- ---------- BACU019366/1-543 GVVQTAYANG SSTRYLEEVM KVPVYCTKTG VKHLHRKAQE FDVGVYFEAN 401 450 ENSP00000425809/1-570 GHGTALFSTA VEMKIKQSAE QL-EDKKRKA AKMLENIIDL FNQAAGDAIS ENSBTAP00000000902/1-542 GHGTVLFSKA AETKIKQLAK ES-EDEKRKA AKMLENIIDL FNQTIGDAIS ENSTTRP00000007413/1-543 GHGTVLFSKA AEMKIKQLAK ELEEDKKRKA AKMLENVIDL FNQATGDAIS bmy_19009T0/1-405 ---------- ---------- ---------- ---------- -LQATGDAIS BACU019366/1-543 GHGTVLFSKA AEMKIKQLAK ELEEDKKRKA AKMLENVIDL FNQATGDAIS 451 500 ENSP00000425809/1-570 DMLVIEAILA LKGLTVQQWD ALYTDLPNRQ LKVQVADRRV ISTTDAERQA ENSBTAP00000000902/1-542 DMLVIEAILA LKGLTVQQWD ALYTDLPNRQ LKVKVADRQV ISTTDAERQV ENSTTRP00000007413/1-543 DMLVIEAILA LKGLTVQQWD ALYTDLPNRQ LKVKVADRQV ISTTDAERQA bmy_19009T0/1-405 DMLVIEAILA LKGLTVQQWD ALYTDLPNRQ LKVKVADRQV ISTTDAERQA BACU019366/1-543 DMLVIEAILA LKGLTVQQWD ALYTDLPNRQ LKVKVADRQV ISTTDAERQA 501 550 ENSP00000425809/1-570 VTPPGLQEAI NDLVKKYKLS RAFVRPSGTE DVVRVYAEAD SQESADHLAH ENSBTAP00000000902/1-542 VKPPGLQEAI NDLVKKYRLS RAFVRPSGTE DIVRVYAEAD SQENTDSLAY ENSTTRP00000007413/1-543 VKPPGLQEAI NELVKKYRLS RAFVRPSGTE DIVRVYAEAD SQENADSLAY bmy_19009T0/1-405 VKPPGLQEAI NELVKKYRLS RAFVRPSGTE DIVRVYAEAD SQENADSLAY BACU019366/1-543 VKPPGLQEAI NELVKKYRLS RAFVRPSGTE DIVRVYAEAD SQENADSLAY 551 600 ENSP00000425809/1-570 EVSLAVFQLA GGIGERPQPG F ENSBTAP00000000902/1-542 EVSLAVFQLA GGIGERPQRG F ENSTTRP00000007413/1-543 EVSLAVFQLA GGIGERPQPG F bmy_19009T0/1-405 EVSLAVFQLA GGIGERPQPG F BACU019366/1-543 EVSLAVFQLA GGIGERPQPG F