KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 5 Type: P Thu May 15 16:12:42 2014 Check: 00 ..
Name: ENSP00000425809/1-570 Len: 571 Check: 9970 Weight: 1.00
Name: ENSBTAP00000000902/1-542 Len: 571 Check: 3270 Weight: 1.00
Name: ENSTTRP00000007413/1-543 Len: 571 Check: 2916 Weight: 1.00
Name: bmy_19009T0/1-405 Len: 571 Check: 3292 Weight: 1.00
Name: BACU019366/1-543 Len: 571 Check: 6900 Weight: 1.00
//
1 50
ENSP00000425809/1-570 MGGEWGQSAI CPESAQEWTY QVGQHLVDMD LGAITKYSAL HAKPNGLILQ
ENSBTAP00000000902/1-542 ---------- ---------- --------MD LDAVTKQSVL HAKPDGLILQ
ENSTTRP00000007413/1-543 ---------- ---------- --------MD LDAVTKQSAL HAKPDGLTLQ
bmy_19009T0/1-405 ---------- ---------- --------MD LDAVTKQSAL HAKPDGLTLQ
BACU019366/1-543 ---------- ---------- --------MD LDAVTKQSAL HAKPDGLTLQ
51 100
ENSP00000425809/1-570 YGTAGFRTKA EHLDHVMFRM GLLAVLRSKQ TKSTIGVMVT ASHNPEEDNG
ENSBTAP00000000902/1-542 YGTAGFRTKA EHLDHVMFRM GLLAVLRSKQ TKSTIGVMVT ASHNPEEDNG
ENSTTRP00000007413/1-543 YGTAGFRTKA EHLDHVMFRM GLLAVLRSKQ TKSTIGVMVT ASHNPEEDNG
bmy_19009T0/1-405 YGTAGFRTKA EHLDHVMFRM GLLAVLRSKQ TKSTIGVMVT ASHNPEEDNG
BACU019366/1-543 YGTAGFRTKA EHLDHVMFRM GLLAVLRSKQ TKSTIGVMVT ASHNPEEDNG
101 150
ENSP00000425809/1-570 VKLVDPLGEM LAPSWEEHAT CLANAEEQDM QRVLIDISEK EAVNLQQDAF
ENSBTAP00000000902/1-542 VKLVDPLGEM LAASWEEHAT CLANAEEQHL PRVLVDISEK AAVDLHQDAF
ENSTTRP00000007413/1-543 VKLVDPLGEM LAPSWEEHAT CLANAEEQDL PRVLVDIGEK AAVNLHQDAF
bmy_19009T0/1-405 VKLVDPLGEM LAPSWEEHAT CLANAEEPDL PRVLVDISEK AAVNLHQDAF
BACU019366/1-543 VKLVDPLGEM LAQSWEEHAT CLANAEEPDL PRVLVDIGEK AAVNLHQDAF
151 200
ENSP00000425809/1-570 VVIGRDTRPS SEKLSQSVID GVTVLGGQFH DYGLLTTPQL HYMVYCRNTG
ENSBTAP00000000902/1-542 VVIGRDTRPS SERLSQSVID GVTVLGGQFY DYGLLTTPQL HYMVFCRNSN
ENSTTRP00000007413/1-543 VVIGRDTXXX XXXXXXXXXX XXXXXXXXXX XYGLLTTPQL HYMVYCRNTS
bmy_19009T0/1-405 VVIGRDTRPS SEKLSQSVID GVTVLGGQFH DYGLLTTPQL HYMVCCRNTS
BACU019366/1-543 VVIGRDTRPS SEKLSQSVID GVTVLGGQFH DYGLLTTPQL HYMVYCRNTS
201 250
ENSP00000425809/1-570 GRYGKATIEG YYQKLSKAFV ELTKQASCSG DEYRSLKVDC ANGIGALKLR
ENSBTAP00000000902/1-542 GQYGKATVEG YYQKLSSAFV ELTKQAFCRG DDHRTLKVDC ANGIGALKLA
ENSTTRP00000007413/1-543 GQYGKATIEG YYQKLSAAFV ELTKQASCSG DGQRTLKVDC ANGIGALKLR
bmy_19009T0/1-405 GQYGKATIEG YYQKLSAAFV ELTKQAFCSG DDQRTLKVDC ANGIGALKLR
BACU019366/1-543 GRYGKATIEG YYQKLSTAFV ELTKQTFCSG DDQRTLKVDC ANGIGALKLR
251 300
ENSP00000425809/1-570 EMEHYFSQGL SVQLFNDGSK GKLNHLCGAD FVKSHQKPPQ GMEIKSNERC
ENSBTAP00000000902/1-542 EMKHYFSPGL SVQLFNDGTK GKLNHLCGAD FVKSHQKPPQ GIEMRANERC
ENSTTRP00000007413/1-543 EMKHYFSQGL SVQLFNDGTK GKLNHLCGAD FVKSHQKPPQ GIEMKSNERC
bmy_19009T0/1-405 EMKHYFSQGL SVQLFNDGTK GKLNHLCGAD FVKSHQKPPQ ----------
BACU019366/1-543 EMKHYFSQGL SVQLFNDGTK GKLNHLCGAD FVKSHQKPPQ GIEMKSNERC
301 350
ENSP00000425809/1-570 CSFDGDADRI VYYYHDADGH FHLIDGDKIA TLISSFLKEL LVEIGESLNI
ENSBTAP00000000902/1-542 CSFDGDADRI VYYYHDADGQ FHLIDGDKIA TLISSFLKEL LLEIGDGLSL
ENSTTRP00000007413/1-543 CSFDGDADRI IYYYHDADGQ FHLVDGDKIA ALISSFLKEP LLEIGDSLSL
bmy_19009T0/1-405 ---------- VF-------- ---------- ---------- -------VNA
BACU019366/1-543 CSFDGDADRI VYYYHDADGQ FHLVDGDKIA ALISSFLKEP LLEIGDSLSL
351 400
ENSP00000425809/1-570 GVVQTAYANG SSTRYLEEVM KVPVYCTKTG VKHLHHKAQE FDIGVYFEAN
ENSBTAP00000000902/1-542 GVVQTAYANG SSTRYLEEVM KVPVYCTKTG VKHLHHKAQE FDIGVYFEAN
ENSTTRP00000007413/1-543 GVVQTAYANG SSTRYLEEVM KVPVYCTKTG VKHLHHKAQE FDIGVYFEAN
bmy_19009T0/1-405 GTLRVSYT-- ---------- ---------- ---------- ----------
BACU019366/1-543 GVVQTAYANG SSTRYLEEVM KVPVYCTKTG VKHLHRKAQE FDVGVYFEAN
401 450
ENSP00000425809/1-570 GHGTALFSTA VEMKIKQSAE QL-EDKKRKA AKMLENIIDL FNQAAGDAIS
ENSBTAP00000000902/1-542 GHGTVLFSKA AETKIKQLAK ES-EDEKRKA AKMLENIIDL FNQTIGDAIS
ENSTTRP00000007413/1-543 GHGTVLFSKA AEMKIKQLAK ELEEDKKRKA AKMLENVIDL FNQATGDAIS
bmy_19009T0/1-405 ---------- ---------- ---------- ---------- -LQATGDAIS
BACU019366/1-543 GHGTVLFSKA AEMKIKQLAK ELEEDKKRKA AKMLENVIDL FNQATGDAIS
451 500
ENSP00000425809/1-570 DMLVIEAILA LKGLTVQQWD ALYTDLPNRQ LKVQVADRRV ISTTDAERQA
ENSBTAP00000000902/1-542 DMLVIEAILA LKGLTVQQWD ALYTDLPNRQ LKVKVADRQV ISTTDAERQV
ENSTTRP00000007413/1-543 DMLVIEAILA LKGLTVQQWD ALYTDLPNRQ LKVKVADRQV ISTTDAERQA
bmy_19009T0/1-405 DMLVIEAILA LKGLTVQQWD ALYTDLPNRQ LKVKVADRQV ISTTDAERQA
BACU019366/1-543 DMLVIEAILA LKGLTVQQWD ALYTDLPNRQ LKVKVADRQV ISTTDAERQA
501 550
ENSP00000425809/1-570 VTPPGLQEAI NDLVKKYKLS RAFVRPSGTE DVVRVYAEAD SQESADHLAH
ENSBTAP00000000902/1-542 VKPPGLQEAI NDLVKKYRLS RAFVRPSGTE DIVRVYAEAD SQENTDSLAY
ENSTTRP00000007413/1-543 VKPPGLQEAI NELVKKYRLS RAFVRPSGTE DIVRVYAEAD SQENADSLAY
bmy_19009T0/1-405 VKPPGLQEAI NELVKKYRLS RAFVRPSGTE DIVRVYAEAD SQENADSLAY
BACU019366/1-543 VKPPGLQEAI NELVKKYRLS RAFVRPSGTE DIVRVYAEAD SQENADSLAY
551 600
ENSP00000425809/1-570 EVSLAVFQLA GGIGERPQPG F
ENSBTAP00000000902/1-542 EVSLAVFQLA GGIGERPQRG F
ENSTTRP00000007413/1-543 EVSLAVFQLA GGIGERPQPG F
bmy_19009T0/1-405 EVSLAVFQLA GGIGERPQPG F
BACU019366/1-543 EVSLAVFQLA GGIGERPQPG F