KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:12:43 2014 Check: 00 .. Name: ENSTTRP00000012815/1-1602 Len: 1621 Check: 5868 Weight: 1.00 Name: ENSBTAP00000000910/1-1612 Len: 1621 Check: 5706 Weight: 1.00 Name: bmy_08334T0/1-1385 Len: 1621 Check: 730 Weight: 1.00 Name: BACU013060/1-1614 Len: 1621 Check: 3401 Weight: 1.00 // 1 50 ENSTTRP00000012815/1-1602 MNSPVDPGAR QALKKKPPER TP-----EDL NTIYSYLHGM EILSNLREHQ ENSBTAP00000000910/1-1612 -MGEKPDGNK QLLLRKIAAQ ARITPVLQDL NTIYSYLHGM EILSNLREHQ bmy_08334T0/1-1385 ---------- ---------- ---------- ---------- ---------- BACU013060/1-1614 MNSPVDPGAR QALKKKPPER TP-----EDL NTIYSYLHGM EILSNLREHQ 51 100 ENSTTRP00000012815/1-1602 LRLMSARARY ERYSGNQVLF CSETIARCWY ILLSGSVLMK DSMVLPPCSF ENSBTAP00000000910/1-1612 LRLMSARARY ERYSGNQVLF CSETIARCWY ILLSGSVLMK DSMVLPPCSF bmy_08334T0/1-1385 ---------- ---------- ---------- ---------- ---------- BACU013060/1-1614 LRLMSARARY ERYSGNQVLF CSETIARCWY ILLSGSVLMK DSMVLPPCSF 101 150 ENSTTRP00000012815/1-1602 GKQFGGKRGC DCLVLEPSEM IVVENSKDNE DSILQREIPA RQSRRRFRKI ENSBTAP00000000910/1-1612 GKQFGGKRGC DCLVLEPSEM IVVENSKDNE DNILQREIPA RQSRRRFRKI bmy_08334T0/1-1385 ---------- ---------- ---------- ---------- ---------- BACU013060/1-1614 GKQFGGKRGC DCLVLEPSEM IVVENSKDNE DSILQREVPA RQSRRRFRKI 151 200 ENSTTRP00000012815/1-1602 NCKGERQTIT DDVDINSYLS LPADLTKMHI ADNPHPQVTH VSSSQSGCSI ENSBTAP00000000910/1-1612 NCKGERQTIT DDVDINSYLS LPADLTKMHI ADNPHPQVTH VSSSQSGCSI bmy_08334T0/1-1385 ---------- ---------- -------MHI ADNPHPQVTH VSSSQSGCSI BACU013060/1-1614 NCKGERQTIT DDVDINSYLS LPADLTKMHI ADNPHPQVTH VSSSQSGCSI 201 250 ENSTTRP00000012815/1-1602 ASDSGSSSLS DIYQXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000000910/1-1612 ASDSGSSSLS DIYQATESEV GDVDLTRLPE GPVDSEDEEE EDEDIDRTDP bmy_08334T0/1-1385 ASDSGSSSLS DIYQNF---- ---------- ---------- ---------- BACU013060/1-1614 ASDSGSSSLS DIYQATESEV GDVDLTRLPE GPVDSEDEEE EDEEIDRTDP 251 300 ENSTTRP00000012815/1-1602 XXXXXXXXXX XXXXXXXXXX XXXEQLLEFM HQLPAFANMT MSVRRELCSV ENSBTAP00000000910/1-1612 LQGRDLVREC LEKEPADKTD DDIEQLLEFM HQLPAFANMT MSVRRELCSV bmy_08334T0/1-1385 ---------C FLT------- ---EQLLEFM HQLPAFANMT MSVRRELCSV BACU013060/1-1614 LQGRDLVREC LEKEPADKTD DDIEQLLEFM HQLPAFANMT MSVRRELCSV 301 350 ENSTTRP00000012815/1-1602 MIFEVVEQAG AIILEDGQEL DSWYVILNGT VEISHPDGKV ENLFMGNSFG ENSBTAP00000000910/1-1612 MIFEVVEQAG AVILEDGQEL DSWYVILNGT VEISHPDGKV DNLFMGNSFG bmy_08334T0/1-1385 MIFEVVEQAG AIILEDGQEL DSWYVILNGT VEISHPDGKV ENLFMGNSFG BACU013060/1-1614 MIFEVVEQAG AIILEDGQEL DSWYVILNGT VEISHPDGKV ENLFMGNSFG 351 400 ENSTTRP00000012815/1-1602 ITPTLDKQYT HGVVRTKVDD CQFVCIAQQD YWRILIHVEK NTVL----KE ENSBTAP00000000910/1-1612 ITPTLDKQYM HGVVRTKVDD CQFVCIAQQD YWRILNHVEK NTHKVEEEGE bmy_08334T0/1-1385 ITPTLDKQYM HGVVRTKVDD CQFVCIAQQD YWRILNHVEK NTHKVEEEGE BACU013060/1-1614 ITPTLDKQYM HGVVRTKVDD CQFVCIAQQD YWRILNHVEK NTHKVEEEGE 401 450 ENSTTRP00000012815/1-1602 IVMVHEHREL DRSGTRKGHI VIKATPERLI MHLIEEHSIV DPTYIEDFLL ENSBTAP00000000910/1-1612 IVMVHEHREL DRSGTRKGHI VIKGTPERLI MHLIEEHSIV DPTYIEDFLL bmy_08334T0/1-1385 IVMVHEHREL DRSGTRKGHI VIKATPERLI MHLIEEHSIV DPTYIEDFLL BACU013060/1-1614 IVMVHEHREL DRSGTRKGHI VIKATPERLI MHLIEEHSIV DPTYIEDFLL 451 500 ENSTTRP00000012815/1-1602 TYRTFLESPL DVGTKLLEWF KIDSLRDKVT RIVLLWVNNH FNDFEGDPAM ENSBTAP00000000910/1-1612 TYRTFLASPL DVGTKLLEWF KIDSLRDKVT RIVLLWVNNH FNDFEGDPAM bmy_08334T0/1-1385 TYRTFLESPL DVGTKLLEWF KIDSLRDKVT RIVLLWVNNH FNDFEGDPAM BACU013060/1-1614 TYRTFLESPL DVGTKLLEWF KIDSLRDKVT RIVLLWVNNH FNDFEGDPAM 501 550 ENSTTRP00000012815/1-1602 TRFLEEFEKN LEDTKMNGHL RLLNIACAAK AKWRQVVLQK ASRESPLHFS ENSBTAP00000000910/1-1612 TQFLEEFEKN LEDTKMNGHL RLLNIACAAK AKWRQVVLQK ASRESPLHFS bmy_08334T0/1-1385 TRFLEEFEKN LEDTKMNGHL RLLNIACAAK AKWRQVVLQK ASRESPLHFS BACU013060/1-1614 TRFLEEFEKN LEDTKMNGHL RLLNIACAAK AKWRQVVLQK ASRESPLHFS 551 600 ENSTTRP00000012815/1-1602 LNGGSEKAFG IFVEGVEPGS KAADAGLKRG DQIMEVNGQN FENITFVKAL ENSBTAP00000000910/1-1612 LSGGSEKGFG IFVESVEPSS KAADAGLKRG DQVMEVNGQN FENITFVKAL bmy_08334T0/1-1385 LNGGSEKAFG IFVEGVEPGS KAADAGLKRG DQIMEVNGQN FENITFVKAL BACU013060/1-1614 LNGGSEKAFG IFVEGVEPGS KAADAGLKRG DQIMEVNGQN FENITFVKAL 601 650 ENSTTRP00000012815/1-1602 EILRNNTHLA LTVKTNIFVF KELLTRTEQE KSGVPHIPKI AEKKSNRHSI ENSBTAP00000000910/1-1612 EILRNNTHLA LTVKTNIFVF KELLSRTEQE KSGVPHIPKI AEKKSNRHSI bmy_08334T0/1-1385 EILRNNTHLA LTVKTNIFVF KELLTRTEQE KSGVPHIPKI AEKKSNRHSI BACU013060/1-1614 EILRNNTHLA LTVKTNIFVF KELLTRTEQE KSGVPHIPKI AEKKSNRHSI 651 700 ENSTTRP00000012815/1-1602 QDVPGDIEQT SQEKGNKKIK ANTVSGGRNK IRKILDKTRF SILPPKLFSD ENSBTAP00000000910/1-1612 QDVPGDLEQT SQEKGNKKIK ANTVSGGRNK IRKILDKTRF SILPPKLFSD bmy_08334T0/1-1385 QDVPGDIEQT SQEKGNKKIK ANTVSGGRNK IRKILDKTRF SILPPKLFSD BACU013060/1-1614 QDVPGDIEQT SQEKGNKKIK ANTVSGGRNK IRKILDKTRF SILPPKLFSD 701 750 ENSTTRP00000012815/1-1602 VGLSQSQDDS IVGTRHCRHS LAIMPIPGTL SSSSPDLLQP TTSMLDFSNP ENSBTAP00000000910/1-1612 GGLSQSQDDS IVGTRHCRHS LAIMPIPGTL SSSSPDLLQP TTSMLDFSNP bmy_08334T0/1-1385 VGLSQSQDDS IVGTRHCRHS LAIMPIPGTL SSSSPDLLQP TTSMLDFSNP BACU013060/1-1614 VGLSQSQDDS IVGTRHCRHS LAIMPIPGTL SSSSPDLLQP TTSMLDFSNP 751 800 ENSTTRP00000012815/1-1602 SDIPDQVIRV FKADQQSCYI IICKDTTAKE VVCQAIHEFG LTGASDTYSL ENSBTAP00000000910/1-1612 SDIPDQVIRV FKADQQSCYI IISKDTTAKE VVCQAIHEFG LTGASDTYSL bmy_08334T0/1-1385 SDIPDQVIRV FKADQQSCYI IICKDTTAKE VVCQAIHEFG LTGASDTYSL BACU013060/1-1614 SDIPDQVIRV FKADQQSCYI IICKDTTAKE VVCQAIHEFG LTGASDTYSL 801 850 ENSTTRP00000012815/1-1602 CEVSVTPEGV IKQRRLPDQF SKLADRIQLN GXXXXXXXXX XXXXXXXXXX ENSBTAP00000000910/1-1612 CEVSVTPEGV IKQRRLPDQF SKLADRIQLN GRYYLKNNME TETLCSDEDA bmy_08334T0/1-1385 CEVSVTPEGV IKQRRLPDQF SKLADRIQLN GRYYLKNNME TETLCSDEDA BACU013060/1-1614 CEVSVTPEGV IKQRRLPDQF SKLADRIQLN GRYYLKNNME TETLCSDEDA 851 900 ENSTTRP00000012815/1-1602 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000000910/1-1612 QELVKESQLS MLQLSTIEVA TQLSMRDFDL FRNIEPTEYI DDLFKLESKT bmy_08334T0/1-1385 QELIKESQLS MLQLSTIEVA TQLSMRDFDL FRNIEPTEYI DDLFKLDSKT BACU013060/1-1614 QELIKESQLS MLQLSTIEVA TQLSMRDFDL FRNIEPTEYI DDLFKLDSKT 901 950 ENSTTRP00000012815/1-1602 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000000910/1-1612 GNTHLKEFED IVNQETFWVA SEILTESNQL KRMKIIKHFI KIALHCRECK bmy_08334T0/1-1385 GNTHLKEFED IVNQETFWVA SEILTESNQL KRMKIIKHFI KIALHCRECK BACU013060/1-1614 GNTHLKEFED IVNQETFWVA SEILTESNQL KRMKIIKHFI KIALHCRECK 951 1000 ENSTTRP00000012815/1-1602 XXXXXXXXXX GLNLASVARL RGTWEKLPSK YEKHLQDLQD LFDPSRNMAK ENSBTAP00000000910/1-1612 NFNSMFAIIS GLNLASVARL RGTWEKLPSK YDKHFQDLQD LFDPSRNMAK bmy_08334T0/1-1385 NFNSMFAIIS GLNLASVARL RGTWEKLPSK YEKHLQDLQD LFDPSRNMAK BACU013060/1-1614 NFNSMFAIIS GLNLASVARL RGTWEKLPSK YEKHLQDLQD LFDPSRNMAK 1001 1050 ENSTTRP00000012815/1-1602 YRNILSSQSM QPPIIPLFPV VKKDMTFLHE GNDSKVDGLV NFEKLRMIAK ENSBTAP00000000910/1-1612 YRNILSSQSM QPPIIPLFPV VKKDMTFLHE GNDSKVDGLV NFEKLRMIAK bmy_08334T0/1-1385 YRNILSSQSM QPPIIPLFPV VKKDMTFLHE GNDSKVDGLV NFEKLRMIAK BACU013060/1-1614 YRNILSSQSM QPPIIPLFPV VKKDMTFLHE GNDSKVDGLV NFEKLRMIAK 1051 1100 ENSTTRP00000012815/1-1602 EIRQVVRMTS ANMDPAMMFR QR-------- SLSQGSTNSN MLDVQGGAHK ENSBTAP00000000910/1-1612 EIRQVVRMTS ANMDPAMMFR QRKKRWRSLG SLSQGSTNSN MLDVQGGAHK bmy_08334T0/1-1385 EIRQVVRMTS ANMDPAMM-- --KKRWRSLG SLSQGSTNSN MLDVQGGAHK BACU013060/1-1614 EIRQVVRMTS ANMDPAMMFR QRKKRWRSLG SLSQGSTNSN MLDVQGGAHK 1101 1150 ENSTTRP00000012815/1-1602 KKARRSSLLN AKKLYEDAQM ARKVKQYLSS LDVETDEEKF QMMSLQWEPA ENSBTAP00000000910/1-1612 KRARRSSLLN AKKLYEDAQM ARKVKQYLSS LDVETDEEKF QMMSLQWEPA bmy_08334T0/1-1385 KKARRSSLLN AKKLYEDAQM ARKVKQYLSS LDVETDEEKF QMMSLQWEPA BACU013060/1-1614 KKARRSSLLN AKKLYEDAQM ARKVKQYLSS LDVETDEEKF QMMSLQWEPA 1151 1200 ENSTTRP00000012815/1-1602 YGTLTKNLSE KRSVKSSEMS PVPVRSAGQA AKAYLHQPHR VSQVLQVPAV ENSBTAP00000000910/1-1612 YGTLTKNLNE KKSMKSSEMS PVPLRSAGQT TKAHLHQPHR GSQVLQVPAV bmy_08334T0/1-1385 YGTLTKNLSE KRSVKSSEMS PVPVRSAGQA AKAHLHQPHR VSQVLQVPAV BACU013060/1-1614 YGTLTKNLSE KRSVKSSEMS PVPVRSAGQA AKAHLHQPHR VSQVLQVPAV 1201 1250 ENSTTRP00000012815/1-1602 NLHPIRKKGQ AKDPATLSTS LPQKILGTTE EIS-GKKHTE DTISVASSLH ENSBTAP00000000910/1-1612 NLHPIRKKGQ GKDPATLSTG LPQKILGTAE EVSGGKKHTE DTVSVASSLH bmy_08334T0/1-1385 NLHPIRKKGQ AKDPATLSTS LPQKVLGTTE EIS-GKKHTE DTISMASSLH BACU013060/1-1614 NLHPIRKKGQ AKDPATLSTS LPQKVLGTTE EIS-GKKHTE DTISMASSLH 1251 1300 ENSTTRP00000012815/1-1602 SSPPASPQGS PRKGYTLIPS AKSDNLSDSS HSEISSRSSI VSNCSVDSMS ENSBTAP00000000910/1-1612 SSPPVSPQGS PRKGYTLIPS AKSDNLSDSS HSEISSRSSI VSNCSVDSMS bmy_08334T0/1-1385 SSPPASPQGS PRKGYTLIPS AKSDNLSDSS HSEISSRSSI VSNCSVDSMS BACU013060/1-1614 SSPPASPQGS PRKGYTLIPS AKSDNLSDSS HSEISSRSSI VSNCSVDSMS 1301 1350 ENSTTRP00000012815/1-1602 AALQDERCSS QAVAVPESTG AFEKTEHSSG IGDHSQPGPG WTLSKPSLI- ENSBTAP00000000910/1-1612 TALQDERCSS QAVAVPESTG ALEKTEHSSG IGDHSQLGPG WTLSKPSLIN bmy_08334T0/1-1385 AALQDERCSS QAVAVPESTG AFEKTEHSSG IGDHSQPGPG WTLSKPSLI- BACU013060/1-1614 AALQDERCSS QAVAVPESTG AFEKTEHSSG IGDHSQPGPG WTLSKPSLI- 1351 1400 ENSTTRP00000012815/1-1602 KNLAVSSSVS NDEISHEHII IEAADSGRGS WTSCSSSSHD NFQSLPNPKG ENSBTAP00000000910/1-1612 KSLAVSSSVS NEEISHEHII IETADSGRGS WTSCSSSSHD NFQSLPNPKG bmy_08334T0/1-1385 KNLAVSSSMS NDEISHEHII IEAADSGRGS WTSCSSSSHD NFQSLPNPKG BACU013060/1-1614 KNLAVSSSMS NDEISHEHII IEAADSGRGS WTSCSSSSHD NFQSLPNPKG 1401 1450 ENSTTRP00000012815/1-1602 WDFLNSYRHT HLDGPIAEVE PTDCEPCTCP KGCSRTCGQC KGSLETNQLR ENSBTAP00000000910/1-1612 WEFLNSYRPT HLDGPIAEVE PTDCEHYSCP KGCSRTCGQC KGSLETNQMR bmy_08334T0/1-1385 WDFLNSYRHT HLDGPIAEVE PTDCEPCTCP KGCSRTCGQC KGSLETNQMR BACU013060/1-1614 WDFLNSYRHT HLDGPIAEVE PTDCEPCTCP KGCSRTCGQC KGSLETNQMR 1451 1500 ENSTTRP00000012815/1-1602 QSWASSSSLS DTYEPNYGTV KRRVLESTPA ESSEGLDHKD GIDPVYKTVT ENSBTAP00000000910/1-1612 QSWASSSSLS DTYEPNYGTV KRRVLENTPA ESSEGLDHKE GIDPVYKTVT bmy_08334T0/1-1385 QSWASSSSLS DTYEPNYGTV KRRVLESTPA ESSEGLDHKD GIDPVYKTVT BACU013060/1-1614 QSWASSSSLS DTYEPNYGTV KRRVLESTPA ESAEGLDHKD SIDPVYKTVT 1501 1550 ENSTTRP00000012815/1-1602 SSTEKGLIVY CVTSPKKEDR YREPPPTPPG YMGISLADLK EGPHLHLKPP ENSBTAP00000000910/1-1612 SSTEKGLIVY CVTSPKKEDR YREPPPTPPG YMGISLADLK EGPHLHLKPP bmy_08334T0/1-1385 SSTEKGLIVY CVTSPKKEDR YREPPPTPPG YMGISLADLK EGPHLHLKPP BACU013060/1-1614 SSTEKGLIVY CVTSPKKEGR YSEPPPTPPG YMGIPLADLK EGPHLHLKPP 1551 1600 ENSTTRP00000012815/1-1602 DYSVAVQRSK MMHNSLSRLP PASLSSNPVA CVPSKIVTQP QRHNLQPSHP ENSBTAP00000000910/1-1612 EYSVAVQRSK MMHNSLSRLP PASLSSSPVA CVPSKIVIQP QRHKL----- bmy_08334T0/1-1385 DYSVAVQRSK MMHNSLSRLP PASLSSNPVA CVPSKIITQP QRHNLQPSHP BACU013060/1-1614 DYSVAVQRSK MMHNSLSRLP PASLSSNPVA CVPSKIITQP QRHNLQPSHP 1601 1650 ENSTTRP00000012815/1-1602 KLADVTDADS EADENEQVSA V ENSBTAP00000000910/1-1612 ---DVTDGDS EADENEQVSA V bmy_08334T0/1-1385 KLADVTDADS EADENEQVSA V BACU013060/1-1614 KLADVTDADS EADENEQVSA V