KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:12:46 2014 Check: 00 .. Name: ENSTTRP00000014248/1-610 Len: 678 Check: 5365 Weight: 1.00 Name: bmy_01985T0/1-529 Len: 678 Check: 2351 Weight: 1.00 Name: ENSP00000228862/1-665 Len: 678 Check: 7873 Weight: 1.00 Name: BACU016992/1-479 Len: 678 Check: 9819 Weight: 1.00 Name: ENSBTAP00000000929/1-643 Len: 678 Check: 6309 Weight: 1.00 // 1 50 ENSTTRP00000014248/1-610 ---------- -------LLE SGTEKVLLID SRPFVEYNTS HILEAININC bmy_01985T0/1-529 ---------- ---------- ---------- ---------- ---------- ENSP00000228862/1-665 MAHEMIGTQI VTERLVALLE SGTEKVLLID SRPFVEYNTS HILEAININC BACU016992/1-479 MAHEMIGTQI VTERLVALLE SGTEKVLLID SRPFVEYNTS HILEAININC ENSBTAP00000000929/1-643 MAHEMIGTQI VTERLVALLE SGTEKVLLID SRPFVEYNTS HILEAININC 51 100 ENSTTRP00000014248/1-610 SKLMKRRLQQ DKVLITELIQ HSAKHKVDVD CSQKVVVYDQ SSQDVASLAS bmy_01985T0/1-529 -----MKLSV DKA------- ---------- ---------- --------RS ENSP00000228862/1-665 SKLMKRRLQQ DKVLITELIQ HSAKHKVDID CSQKVVVYDQ SSQDVASLSS BACU016992/1-479 SKLMKRRLQQ DKVLITELIQ HSAKHKVDID CSQKVVVYDQ SSQDVASLAS ENSBTAP00000000929/1-643 SKLMKRRLQQ DKVLITELIQ HSAKHKVDLD CSQKVVVYDQ SSQDVASLAS 101 150 ENSTTRP00000014248/1-610 DCFLTVLLGK LEKSFSSVHL LAGGFAEFSR CFPGLCEGKS TLVPTCISQP bmy_01985T0/1-529 SCLIT----- --RKITLVVV WRGKHCKLQD ---------- ---------- ENSP00000228862/1-665 DCFLTVLLGK LEKSFNSVHL LAGGFAEFSR CFPGLCEGKS TLVPTCISQP BACU016992/1-479 DCFLTVLLGK LERSFSSVHL LAGGFAEFSR CFPGLCEGKS TLVPTCISQP ENSBTAP00000000929/1-643 DCFLTVLLGK LEKSFSSVHL LAGGFAEFSR CFPGLCEGKS TLVPTCISQP 151 200 ENSTTRP00000014248/1-610 CLPVANIGPT RILPNLYLGC QRDVLNKELM QQNGIGYVLN ASNTCPKPDF bmy_01985T0/1-529 -LPVGFFA-- ---------- -----TMELM QQNGIGYVLN ASNTCPKPDF ENSP00000228862/1-665 CLPVANIGPT RILPNLYLGC QRDVLNKELM QQNGIGYVLN ASNTCPKPDF BACU016992/1-479 CLPVANIGPT RILPNLYLGC QRDVLNKELM QQNGIGYVLN ASNTCPKPDF ENSBTAP00000000929/1-643 CLPVANIGPT RILPNLYLGC QRDVLNKELM QQNGIGYVLN ASNTCPKPDF 201 250 ENSTTRP00000014248/1-610 IPESHFLRVP VNDSFCEKIL PWLDKSVDFI XXXXXXXXXX XXXXXXXXXX bmy_01985T0/1-529 IPESHFLRVP VNDSFCEKIL PWLDKSVDFI EKAKASNGCV LVHCLAGISR ENSP00000228862/1-665 IPESHFLRVP VNDSFCEKIL PWLDKSVDFI EKAKASNGCV LVHCLAGISR BACU016992/1-479 IPESHFLRVP VNDSFCEKIL PWLDKSVDFI EKAKASNGCV LVHCLAGISR ENSBTAP00000000929/1-643 IPESHFLRVP VNDSFCEKIL PWLDKSVDFI EKAKASNGCV LVHCLAGISR 251 300 ENSTTRP00000014248/1-610 XXXXXXXXXX XXXXXXXXXX XXFVKEKRPT ISPNFNFLGQ LLDYEKRIKS bmy_01985T0/1-529 SATIAIAYIM KRMDMSLDEA YRFVKEKRPT ISPNFNFLGQ LLDYEKRIQS ENSP00000228862/1-665 SATIAIAYIM KRMDMSLDEA YRFVKEKRPT ISPNFNFLGQ LLDYEKKIKN BACU016992/1-479 SATIAIAYIM KRMDMSLDEA YRFVKEKRPT ISPNFNFLGQ LLDYEKRIQS ENSBTAP00000000929/1-643 SATIAIAYIM KRMDMSLDEA YRFVKEKRPT ISPNFNFLGQ LLDYEKRIKS 301 350 ENSTTRP00000014248/1-610 QTGAAGPKSK LKLLHLEKPS EPVPVAVAA- --AEGGQGGQ PPLGPPRARP bmy_01985T0/1-529 QTGAAGSKSK LKLLHLEKPS EPLPVPVPVA VPAEGGQGGQ PALGPPRSRP ENSP00000228862/1-665 QTGASGPKSK LKLLHLEKPN EPVPAV---- --SEGGQKSE TPLSPPCA-- BACU016992/1-479 QTGAAGPKSK LKLLHLEKPS E--------- ---------- ---------- ENSBTAP00000000929/1-643 QTGAAGPKSK LKLLPLEKPS ESVAGPGP-- --VEGAQGSQ LPPGPPHGRP 351 400 ENSTTRP00000014248/1-610 AAAPPEALGP RPVPHA---G APGAQPSPPD DGPLVQALNG LHLPADRRED bmy_01985T0/1-529 AAAPPEAAGP RPAPPA---G APGAQPSPPD DGPLVQALNG LHLPADRRED ENSP00000228862/1-665 DSATSEAAGQ RPVHPASVPS VPSVQPSLLE DSPLVQALSG LHLSADRLED BACU016992/1-479 ---------- -PVPP----- ---------- ---------- ---------- ENSBTAP00000000929/1-643 APALSEGAGP RPAPPS---T AP-------D DGPLVQALNG LHLPPDRLED 401 450 ENSTTRP00000014248/1-610 SGRLKRSFSL DIKAVSPSAG AAAPLRGLSS PEAAPEPYKP -SSALEGAGK bmy_01985T0/1-529 SGRLKRSFSL DIKAVSPSAG AAAPLRGLSS PEAAPEPYKP -SSALEGAGK ENSP00000228862/1-665 SNKLKRSFSL DIKSVSYSAS MAASLHGFSS SEDALEYYKP -STTLDGTNK BACU016992/1-479 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000000929/1-643 SGRLKRSFSL DIKSVTPTPG ------GLSS PEAALELYKP AASSLEGAGK 451 500 ENSTTRP00000014248/1-610 PCQFSPVREV SEQTPEASPE REEAGPPRGP QPPRAPEGQG QKPR------ bmy_01985T0/1-529 PCQFSPVREV SEQTPEASPE REEAGPPGGP QPPRAPEGQG ARPR------ ENSP00000228862/1-665 LCQFSPVQEL SEQTPETSPD KEEASIPKKL QTARPSDSQS KRLHSVRTSS BACU016992/1-479 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000000929/1-643 PCQFSPVQEV SEQTPEASPD SEEAPPPR-- --PSDGSGQG ARPR------ 501 550 ENSTTRP00000014248/1-610 ---GERS--- ---------- ---------- -------GPS ---AGLGLEG bmy_01985T0/1-529 ---AGRPLLS PLPRSGSVED HCQPRFLFGL SASQQHLAPS -AAAGLGLEG ENSP00000228862/1-665 SGTAQRSLLS PLHRSGSVED NYHTSFLFGL STSQQHLTKS ---AGLGLKG BACU016992/1-479 ---------- ---------- ----RFLFGL SASQQHLAPS AAAAGLGLEG ENSBTAP00000000929/1-643 ---PGRPLWS PLHRSGSVED RGQPRFLFGL SASQQHLATS --ATGLGLEG 551 600 ENSTTRP00000014248/1-610 WHSDILAPQT SAPS-AKSWY -APEPPHFYS ASAVYGGHAG PPAFSCGQLP bmy_01985T0/1-529 WHSDILAPQP SAPSLAKSWY FAPEPTHFYS ASAVYGGHAG APAFSCGQLP ENSP00000228862/1-665 WHSDILAPQT STPSLTSSWY FATESSHFYS ASAIYGGSAS YSAYSCSQLP BACU016992/1-479 WHSDILAPQP SAPSLAKSWY FAPEPTHFYS ASAVYGGHAG PPAFSCGQLP ENSBTAP00000000929/1-643 WHSDLLAPQT SAPALTKSWY FAPEPPHFYS ASAIYGGRTG HPAFSCSQLP 601 650 ENSTTRP00000014248/1-610 ACGGDPGHSV RRRQKPSDRA DSRRSWHEES PFEKQFKRRS CQMEFGESIM bmy_01985T0/1-529 ACGGDPGHSV RRRQKPSDRA DSRRSWHEES PFEKQFKRRS CQMEFGESIM ENSP00000228862/1-665 TC-GDQVYSV RRRQKPSDRA DSRRSWHEES PFEKQFKRRS CQMEFGESIM BACU016992/1-479 ACGGDPGHSV RRRQKPSDRA DSRRSWHEES PFEKQFKRRS CQMEFGESIM ENSBTAP00000000929/1-643 TCSGDPGHSV RRRHKPGDRA DSRRSWHEES PFEKQFKRRS CQMEFGESIR 651 700 ENSTTRP00000014248/1-610 SENRSREELG KVGSQSSFSG SMEIIEVS bmy_01985T0/1-529 SENRSREELG KVGSQSSFSG SMEIIEVS ENSP00000228862/1-665 SENRSREELG KVGSQSSFSG SMEIIEVS BACU016992/1-479 SENRSREELG KVGSQSSFSG SMEIIEVS ENSBTAP00000000929/1-643 SENRSREELG KVGSQSSFSG SMEIIEVS