KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:12:47 2014 Check: 00 .. Name: ENSP00000368540/1-1119 Len: 1314 Check: 9946 Weight: 1.00 Name: ENSBTAP00000000930/1-1142 Len: 1314 Check: 3712 Weight: 1.00 Name: bmy_05683T0/1-1218 Len: 1314 Check: 5326 Weight: 1.00 Name: BACU006660/1-1168 Len: 1314 Check: 2802 Weight: 1.00 Name: ENSTTRP00000010039/1-1102 Len: 1314 Check: 3093 Weight: 1.00 // 1 50 ENSP00000368540/1-1119 ---------- ---------- -------MMT SVSSDHCRGA REKPQISAAQ ENSBTAP00000000930/1-1142 ---------- ---------- -------MMT SVSSDRSRGA REKPQISATQ bmy_05683T0/1-1218 MSSSSPGDII RDLNFLFCAY IILYILYKMT SMSSDRSRGA REKPQISVTQ BACU006660/1-1168 ---------- ---------- -------MMT SVSSDRSRGA REKPQISVTQ ENSTTRP00000010039/1-1102 ---------- ---------- -------MMT SVSSDRSRGA REKPQISATQ 51 100 ENSP00000368540/1-1119 STQPQKQVVQ ATAEQMRLAQ VIFDKNDSDF EAKVKQLMEV TGKNQDECIV ENSBTAP00000000930/1-1142 ATQLQKQVVQ ATAEQMRLAQ VIFDKNDSEF EAKVKQLMEV TGKNQDECIV bmy_05683T0/1-1218 ATQLQKQVVQ ATAEQMRLAQ VIFDKNDSEF EAKVKQLMEV TGKNQDECIV BACU006660/1-1168 ATQLQKQVVQ ATAEQMRLAQ VIFDKNDSEF EAKVKQLMEV TGKNQDECIV ENSTTRP00000010039/1-1102 ATQLQKQVVQ ATAEQMRLAQ VIFDKNDSEF EAKVKQLMEV TGKNQDECIV 101 150 ENSP00000368540/1-1119 ALHDCNGDVN KAINILLEGN SDTTSWETVG CKKKNFAKEN SENKENREKK ENSBTAP00000000930/1-1142 ALHDCNGDVN KAINVLLEGN SDTTSWETVG GKKKNFGKES SENKENREKR bmy_05683T0/1-1218 ALHDCNGDVN KAINILLEGN SDTLEVKRM- ---------- ---------- BACU006660/1-1168 ALHDCNGDVN KAINILLEGN SDTTSWETVG GKKKNFGKES SENKENREKR ENSTTRP00000010039/1-1102 ALHDCNGDVN KAINILLEGN SDTTSWETVG GKKKTFGKES SENKENREKR 151 200 ENSP00000368540/1-1119 SEKESSRGRG NNNRKGRGGN RGREFRGEEN GIDCNQVDKP SDRGKRARGR ENSBTAP00000000930/1-1142 SEREVSRGRG NNNRKVRGGN RGREFRGEEN GIDCNQGDKP SDRGKRARGR bmy_05683T0/1-1218 ---ELIAIKG TSLQTVAGE- ---------- ----LVVEGP ADWVHWL--- BACU006660/1-1168 SEREVSRGRG NNNRKVRGGN RGREFRGEEN GIDCNQGDKP SDRGKRARGR ENSTTRP00000010039/1-1102 SEREVSRGRG SNNRKVRGGN RGRDFRGEEN GIDCNQGDKP SDRGKRARGR 201 250 ENSP00000368540/1-1119 GFGRGRGRGA GRFSTQGMGT FNPADYSDST STDVCGTKLV VWEAAQNGAD ENSBTAP00000000930/1-1142 GFGRGRGRGA GRFSTQGMGT FNPADYSDSP SIDGCGTKPV VWEAAQNGAD bmy_05683T0/1-1218 --GMLVLLGT ---MTVMFGT FNPADYSDSP SIDGYGTKPV VWEAAQNGAD BACU006660/1-1168 GFGRGRGRGA GRFSTQGMGT FNPADYSDSP SIDGYGTKPV VWEATQNGAD ENSTTRP00000010039/1-1102 AFGRGRGRGA GRFSTQGMGT FNPADYSDSP SIDGCGTKPV GWEAAQNGAD 251 300 ENSP00000368540/1-1119 EGTELASNTH NIAQDLSNKS SYGLKGAWKN SVEEWTTEDW TEDLSETKVF ENSBTAP00000000930/1-1142 EGTELASDAQ NVAQNLSNKN SFGIKGAWKN SVEEWTAEDW TEDVQNRSMY bmy_05683T0/1-1218 EGTELASNAQ NVAQNLPNKN SFGLKGAWKN SVDEWTTEDW TEDLSETKVF BACU006660/1-1168 EGTELASNAQ NVAQNLPNKN SFGLKGAWKN SVDEWTTEDW TEDLSETKVF ENSTTRP00000010039/1-1102 EGTELASNAQ NVAQNLPNKN SLGLKGAWKN SVDEWTTEDW TEDLSETKVF 301 350 ENSP00000368540/1-1119 ---------- TASSAPAENH ILP-GQSIDL VALLQKPVPH -SQASEANSF ENSBTAP00000000930/1-1142 MLELQLTLAV TGFPGGSDDK ELPLQETVDL VALLQKPVPP -SQAPEVNSF bmy_05683T0/1-1218 ---------- TSSSVPAEHH VTP-GQSVDL VALLQKPVPH -SQASEVNSF BACU006660/1-1168 ---------- TSSSVPAEHH VTP-GQSVDL VALLQKPVPH -SQASEVNSF ENSTTRP00000010039/1-1102 ---------- TSSSAPAEHL VTP-GQSVDL VALLQKPVPH NSQASEVNSF 351 400 ENSP00000368540/1-1119 ETSQQQGFGQ ALVFTNSQHN NQMAPGTGSS TAVNSCSPQS LSSVLGSGFG ENSBTAP00000000930/1-1142 ETSQQQSFGQ ALVFTNSQHN NQMAPGTGSS DAVNSYPPQS LSSVLGSGFG bmy_05683T0/1-1218 ETSQQQGFGQ ALVFTNSQHS NQMAXGTGIS TAVNPYPPQS LSSVLGSGFG BACU006660/1-1168 ETSQQQGFGQ ALVFTNSQHS NQMAQGTGIS TAVNPYPPQS LSSVLGSGFG ENSTTRP00000010039/1-1102 ETSQQQGFGQ ALVFTNSQHN SQMAQGTGSS TAVNPYPPQS LSSVLGSGFG 401 450 ENSP00000368540/1-1119 ELAPPKMANI TSSQILDQLK APSLGQFTTT PSTQQNSTSH PTTTTSWDLK ENSBTAP00000000930/1-1142 ELAPSKMANI TSSQILDQLK APSLGQFTTT SSSQQSSTSS PTTTSSWDLK bmy_05683T0/1-1218 ELAPSKVANI TSSQILDQLE APSLGQFTTT PSSQQNNTSP PTTASSWDLK BACU006660/1-1168 ELAPSKVANI TSSQILDQLE APSLGQFTTT PSSQQNNTSP PTTASSWDLK ENSTTRP00000010039/1-1102 ELAPSKMANI TSSQILDQLE APSLGQFTTT PSSQQNNTGP PTTASSWDLK 451 500 ENSP00000368540/1-1119 PPTSQSSVLS HLDFKSQPEP SPVLSQLSQR QQHQSQAVTV PPPGLESFPS ENSBTAP00000000930/1-1142 PPASQSSVLS HFDFKSQPEP SPVLSQLSQR QQHQTQAVTV PPPGLESFPS bmy_05683T0/1-1218 PSASQSSVLS HFDFKSQPEP SPVLSQLSQR QQQQTQAVTV PPPGLESFPS BACU006660/1-1168 PSASQSSVLS HFDFKSQPEP SPVLSQLSQR QQQQTQAVTV PPPGLESFPS ENSTTRP00000010039/1-1102 PSASQSSVLS HFDFKSQPEP SPVLSQLSQR QQQQTQAVTV PPPGLESFPS 501 550 ENSP00000368540/1-1119 QAKLRESTPG DSP-STVNKL LQLPSTTIEN ISVSVHQPQP KHIKLAK-RR ENSBTAP00000000930/1-1142 QVKLREAAPR DSSTSTVNKL LQLPSMTVEN IAVSAHQPQP KHIKLPKSRR bmy_05683T0/1-1218 QVKLRESAPK DSSTSTVNKL LQLPSVTVEN IAMSAHQPQP KHIKLPK-RR BACU006660/1-1168 QVKLRESAPR DSSTSTVNKL LQLPSVTVEN IAVSAHQPQP KHIKLPK-RR ENSTTRP00000010039/1-1102 QVKLRESAPR DSSTSTVNKL LQLPSMTVEN IAVSAHQPQP KHIKLPK-RR 551 600 ENSP00000368540/1-1119 IPPASKIPAS AVEMPGSADV TGLNVQFGAL EFGSEPSLSE FGSAPSSENS ENSBTAP00000000930/1-1142 IPPASKIPAS AVEMPGSADV TGLNVQFGAL EFGSEPSLSE FGSSASSENS bmy_05683T0/1-1218 IPPASKIPAS AVEMPGSADV TGLNVQFGAL EFGSEPSLSE FGSAASSENS BACU006660/1-1168 IPPASKIPAS AVEMPGSADV TGLNVQFGAL EFGSEPSLSE FGSAASSENS ENSTTRP00000010039/1-1102 IPPASKIPAS AVEMPGSADV TGLNVQFGAL EFGSEPSLSE FGSAASSENS 601 650 ENSP00000368540/1-1119 NQIPISLYSK SLSEPLNTSL SMTSAVQNST YTTSVITSCS LTSSSLNSAS ENSBTAP00000000930/1-1142 SQIPISLYSK SLSDSLNTSL PMTSAVQNST YTTSVITSSS LTSSSLSSTS bmy_05683T0/1-1218 SQIPISLYPK SLSDSLNTSL AVTSAVQNST HTTSVITSSS LTSSSLSSTS BACU006660/1-1168 SQIPISLYPK SLSDSLNTSL AVTSAVQNST HTTSVITSSS LTSSSLSSTS ENSTTRP00000010039/1-1102 SQIPISLYSK SLSDSLNTSL AVTSAVQNST HTTSVITSSS LTSSSLSSTS 651 700 ENSP00000368540/1-1119 PVAMSSSYDQ SSVHNRIPYQ SPVSSSESAP GTIMNGHGGG RSQQTLDT-- ENSBTAP00000000930/1-1142 PVTTSSSYDQ SSVHNRIAYQ SSVSPSESAP GTVTNGHGGS RSQQTVDT-- bmy_05683T0/1-1218 PVTTSSSYDQ SSVHDRSAYQ SSVSPSESAP GTITNGHGGS RSQQTVDTPS BACU006660/1-1168 PVTTSSSYDQ SSVHDRSAYQ SSVSPSESAP GTITNGHGGS RSQQTVDT-- ENSTTRP00000010039/1-1102 PVTTSSSYDQ SSVHDRSAYQ SSVSPSESAP GTIMNGHGGS RSQQTVDT-- 701 750 ENSP00000368540/1-1119 ----PKTTGP PSALPSVSSL PSTTSCTALL PSTSQHT--- ------GDLT ENSBTAP00000000930/1-1142 ----PKTTDP PSALPSVASL PSTTSCAPLL PPASQHTATL PSLSQPGDLS bmy_05683T0/1-1218 SVPAPKTTDP PSALPSVGSL PSTTSCTPLL PSAPQHTAAL PSLSQPGDLS BACU006660/1-1168 ----PKTTDP PSALPSVGSL PSTTSCTPLL PSAPQHTAAL PSLSQPGDLS ENSTTRP00000010039/1-1102 ----PKTTDP PSALPSVGSL PSTTSCTPLL PSVPQHT--- ------GDLS 751 800 ENSP00000368540/1-1119 SSPLSQLSSS LSSHQSSL-S AHAALSSSTS HT-------- ---------- ENSBTAP00000000930/1-1142 SSPLSQLSSS LSSHQSSLAS THMPLSASTS HT-------- ---------- bmy_05683T0/1-1218 SSPLSQLSSS LSGHQSSLSS AHTVLSTSTS HTIHV----- ---------- BACU006660/1-1168 SSPLSQLSSS LSGHQSSLSS AHTVLSTSTS HTLCCITLFN QASSDGTLGP ENSTTRP00000010039/1-1102 SSPLSQLSSS LSGHQSSLSS AHTVLSTSTS HT-------- ---------- 801 850 ENSP00000368540/1-1119 ---------- ---------- ----HASVES ASSHQSSATF STAATSVSSS ENSBTAP00000000930/1-1142 ---------- ---------- ----HASVDS APSLQPSATF STAATSASSA bmy_05683T0/1-1218 ---------- -------SWL LSCQHAGVES APSLQSSATF STAATCASSA BACU006660/1-1168 FSVLIPWKYC GFSYRPPPWE YCGKHAGVES TPSLQSSATF STAATCASSA ENSTTRP00000010039/1-1102 ---------- ---------- ----HAGVES APSLQSSATF STAATCASSA 851 900 ENSP00000368540/1-1119 ASSGASLSSS MNTANSLCLG GTPASASSSS SRAAPLVTS- ---------- ENSBTAP00000000930/1-1142 VSSGLSLPSG MNTVSSLCLG NAPGSAPSSS ARAAPLMTS- ---------- bmy_05683T0/1-1218 ASSGLSLPSS MNTVSSLCLG GTAVSAPSSS ARATPLVTSG VCPPGPFRLP BACU006660/1-1168 ASSGLSLPSS MNTVSSLCLG GTAVSAPSSS ARATPLVTS- ---------- ENSTTRP00000010039/1-1102 ASSGLSLPSS MNTVNSLCLG GTAVSAPSSS ARATPLVTS- ---------- 901 950 ENSP00000368540/1-1119 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000000930/1-1142 ---------- ---------- ---------- ---------- ---------- bmy_05683T0/1-1218 RPSKHGFRFS RLLPSPLARG LVWDGAVTAG STPAVPTVPE EPRPCGGPFT BACU006660/1-1168 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010039/1-1102 ---------- ---------- ---------- ---------- ---------- 951 1000 ENSP00000368540/1-1119 -------GKA PPNLPQGVPP LLHNQYLVGP GGLLPAYPIY GYDELQMLQS ENSBTAP00000000930/1-1142 -------GKA PPNLPQGVPP LLHNQYLVGP GGLLPAYPIY GYDELQMLQS bmy_05683T0/1-1218 PFEFAFTGKA PPSLPQGAPP LLHSQYLVGP GGLLPAYPIY GYDELQMLQS BACU006660/1-1168 -------GKA PPSLPQGAPP LLHSQYLVGP GGLLPAYPIY GYDELQMLQS ENSTTRP00000010039/1-1102 -------GKA PPSLPQGAPP LLHSQYLVGP GGLLPAYPVY GYDELQMLQS 1001 1050 ENSP00000368540/1-1119 RLPVDYYGIP FAAPTALASR DGSLANNPYP GDVTKFGRGD SASPAPATTP ENSBTAP00000000930/1-1142 RLPMDYYGIP FATPPALANR DGSLTNNPYS GDVTKFGRGD SASPAPPTTL bmy_05683T0/1-1218 RLPMDYYGIP FATPAALATR DGSLANNPYS GDVTKFGRGD SASPAPATTL BACU006660/1-1168 RLPMDYYGIP FATPAALATR DGSLANNPYS GDVTKFGRGD SASPAPATTL ENSTTRP00000010039/1-1102 RLPMDYYGIP FATPAALASR DGSLANNPYS GDVTKFGRGD SASPAPATTL 1051 1100 ENSP00000368540/1-1119 AQPQQSQSQT HHTAQQPFVN PALPPGYSYT GLPYYTGMPS AFQYGPTMFV ENSBTAP00000000930/1-1142 AQPQQSQSQA HHTAQQPFLS PALPPGYSYT GLPYYTGVPS AFQYGPTMFV bmy_05683T0/1-1218 AQPQQSQSQA HHTAQQPFLN PALPPGYSYT GLPYYTGVPS AFQYGPTVFV BACU006660/1-1168 AQPQQSQSQA HHTAQQPFLN PALPPGYSYT GLPYYTGVPS AFQYGPTVFV ENSTTRP00000010039/1-1102 AQPQQSQSQA HHTAQQPFLN PALPPGYSYT GLPYYTGVPS AFQYGPTVFV 1101 1150 ENSP00000368540/1-1119 PPASAKQHGV NLSTPTPPFQ QASGYGQHGY STG------- ---------- ENSBTAP00000000930/1-1142 PPASAKQHGV SLSTPSTPFQ QASGYGQHSY GTG------- ---------- bmy_05683T0/1-1218 PPASAKQHGV SLSSPSTPFQ QASGYGQHSY SAGEGCSRHG EAREGQAHLA BACU006660/1-1168 PPASAKQHGV SLSSPSTPFQ QASGYGQHSY SAG------- ---------- ENSTTRP00000010039/1-1102 PPASAKQHGV SLSSPTTPFQ QASGYGQHSY SAG------- ---------- 1151 1200 ENSP00000368540/1-1119 ---------- -YDDLTQGTA AGDYSKGGYA GSSQAPNKSA GSGPGKGVSV ENSBTAP00000000930/1-1142 ---------- -YDDLTPGTA AGDYSKGGYG GSSQTQNKAA GSGPGKGVSA bmy_05683T0/1-1218 HTCLLSPAVL GYDDVSQGAA AGDYTKGGYG GSSQAQSKSA GSGPGKGVSA BACU006660/1-1168 ---------- -YDDVSQGAA AGDYTKGGYG GSSQAQSKSA GSGPGKGVSA ENSTTRP00000010039/1-1102 ---------- -YDDVSQGAA AGDYTKGGYG GSSQAQSKSA GSGPGKGVSA 1201 1250 ENSP00000368540/1-1119 SSSTTGLPDM TGSVYNKTQT FDKQGFHAGT PPPFSLPSVL GSTGPLASGA ENSBTAP00000000930/1-1142 TSSTSGLPDM TGSVYNKTQT FDKQGFHAGT PPPFGLPSAL GSTGPLAPGA bmy_05683T0/1-1218 SSSAPGLPDV TGSVYSKTQT FDRQGFHAGT PPPFSLPSAL GSPGPL---- BACU006660/1-1168 SSSAPGLPDV TGSVYSKTQT FDRQGFHAGT PPLCSLPSAL GSPGPL---- ENSTTRP00000010039/1-1102 SSSGPGLPDV TGSVYSKTQT FDRQGFHAGT PPPFSLPSAL GSPGPL---- 1251 1300 ENSP00000368540/1-1119 APGYAPPPFL HILPAHQQPH SQLLHHHLPQ DAQSGSGQRS QPSSLQPKSQ ENSBTAP00000000930/1-1142 APGYAPPPFL HILPAHQQAP SQLLHHHLPQ DAQSGSGQRN QPSSLQPKSQ bmy_05683T0/1-1218 GPGYAPSPLV HVLPAHQQPH SQLLHHHLPQ DAQSGSGQRS QPSSLQPKSQ BACU006660/1-1168 GPGYAPSPLV HVLPAHQQPH SQLLHHHLPQ DAQSGSGQRS QPSSLQPKSQ ENSTTRP00000010039/1-1102 GPGYAPSPLV HVLPAHQQPH SQLLHHHLPQ DAQSGAGQRS QPSSLQPK-- 1301 1350 ENSP00000368540/1-1119 ASKPAYGNSP YWTN ENSBTAP00000000930/1-1142 ASKPAYGNSP YWTN bmy_05683T0/1-1218 ASKPAYGNSP YWTN BACU006660/1-1168 ASKPAYGNSP YWTN ENSTTRP00000010039/1-1102 ---------- ----