KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:12:49 2014 Check: 00 .. Name: ENSP00000329697/1-309 Len: 310 Check: 6713 Weight: 1.00 Name: ENSTTRP00000003529/1-296 Len: 310 Check: 4853 Weight: 1.00 Name: ENSBTAP00000000955/1-287 Len: 310 Check: 78 Weight: 1.00 Name: bmy_06624T0/1-267 Len: 310 Check: 4419 Weight: 1.00 Name: BACU006559/1-242 Len: 310 Check: 8345 Weight: 1.00 // 1 50 ENSP00000329697/1-309 MGVARGPGSR GQHPPPRQQE VCAEGPRARL H-PAPPGLGA SLPFAILTLV ENSTTRP00000003529/1-296 ---------- GRCPPPRQQE VAAGGPPCLP SRPARPGPGA SLPSAILTLV ENSBTAP00000000955/1-287 ---------- ----MERRWV FVLLDVLCVL V--------A ALPCAILTFV bmy_06624T0/1-267 ---------- ----MERRWV FVLLDVLCVL V--------A SLPSAILTLV BACU006559/1-242 ---------- ---------- ---------- ---------- -------MLV 51 100 ENSP00000329697/1-309 NAPYKRGFYC GDDSIRYPYR PDTITHGLMA GVTITATVIL VSAGEAYLVY ENSTTRP00000003529/1-296 HAPYKRGFYC GDDSIRYPYR PDTITHGLMA GVIITTTVIL VSAGEAYLVY ENSBTAP00000000955/1-287 NTPYKRGFYC GDDSIRYPYR PDTITHGLMA GVIITATVIL VSAGEAYLVY bmy_06624T0/1-267 NAPYKRGFYC GDDSIRYPYC PDTITHGLMA GVIITATVVL VSAGEAYLVY BACU006559/1-242 NTPYKRGFYC GDDSIRYPYR PDTITHGLMA GVIITATIIL VSAGEAYLVY 101 150 ENSP00000329697/1-309 TDRLYSRSDF NNYVAAVYKV LGTFLFGAAV SQSLTDLAKY MIGRLRPNFL ENSTTRP00000003529/1-296 TDRLYSRSDF NNYLAALYKV LGAFLFGAAV SQSLTDLAKY MTGRLRPNFL ENSBTAP00000000955/1-287 TDRLYSRSDF NNYLAALYKV VGTFLFGAAV SQSLTDLAKY MTGRLRPNFL bmy_06624T0/1-267 TDRLYSRSNF NNYLAALYKV LGTFLFGAAV SQSLTDLAKY MAGRLRPNFL BACU006559/1-242 TDRLYSRSDF NNYLAALYKV LGAFLFGGAV SQSLTDLAKY MAGRLRPNFL 151 200 ENSP00000329697/1-309 AVCDPDWSRV NCSVYVQLEK VCRGNPADVT EARLSFYSGH SSFGMYCMVF ENSTTRP00000003529/1-296 AVCDPDWSRV NCSVYVQVE- VCRGRPADVT ESRLSFYSGH SSFGMYCMMX ENSBTAP00000000955/1-287 AVCDPDWSRV NCSAYVQVE- VCRGSSANVT ESRLSFYSGH SSFGMYCMVF bmy_06624T0/1-267 AVCDPDWSRV NCSVYVQVE- VCRGSPADVT ESRLSFYSGH SSFGMYCMMF BACU006559/1-242 AVCDPDWSRV NCSVYVQVE- VCRGSPADVT ESRLSFYSGH SSFGMYCMMF 201 250 ENSP00000329697/1-309 LALYVQARLC WKWARLLRPT VQFFLVAFAL YVGYTRVSDY KHHWSDVLVG ENSTTRP00000003529/1-296 XXLYVQARLC WKWARLLRPT VQFFLVAFAL YVSYTRVSDY KHHWSDVLVG ENSBTAP00000000955/1-287 LALYVQARLC WKWARLLRPT VQFFLVAFAL YVGYTRVSDH KHHWSDVLVG bmy_06624T0/1-267 LALYVQARLC WKWARLLRPT VQFFLVAFAL YVGYTRVSDH KHHWSDVLVG BACU006559/1-242 LALYVQARLC WKWARLLRPT VQFFLVAFAL YVGYTRVSDH KHHWSDVLVG 251 300 ENSP00000329697/1-309 LLQGALVAAL TVCYISDFFK ARPPQHCLKE EELERKPSLS LTLTLGEADH ENSTTRP00000003529/1-296 LLQGALVAGL TVRYVSDFFK ARPPRHCLED EEVERTPS-S LTLALGEAGC ENSBTAP00000000955/1-287 LLQGALVASL TVRYISDFFK ARPPQHCPEE EDLERKPSLS LTLALGETDC bmy_06624T0/1-267 LLQGALVAGL TVRYISDFFK ARPPQHCLEE EELERKSS-- ---------- BACU006559/1-242 LLQGALVAGL TVRYVSDFFK ARPPRHCLEE EELERKSS-- ---------- 301 350 ENSP00000329697/1-309 NHYGYPHSSS ENSTTRP00000003529/1-296 SLCGPSCW-- ENSBTAP00000000955/1-287 NHYGYPVSSS bmy_06624T0/1-267 -HH------- BACU006559/1-242 -HH-------