KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:12:51 2014 Check: 00 .. Name: ENSP00000330264/1-1059 Len: 1145 Check: 4194 Weight: 1.00 Name: ENSBTAP00000000958/1-1095 Len: 1145 Check: 5445 Weight: 1.00 Name: BACU006500/1-996 Len: 1145 Check: 6958 Weight: 1.00 Name: bmy_06686T0/1-774 Len: 1145 Check: 9487 Weight: 1.00 // 1 50 ENSP00000330264/1-1059 MEPTVADVHL VPRTTKEVPA LDAACCRAAS IGVVATSLVV LTLGVLLAFL ENSBTAP00000000958/1-1095 MEPTASDLQL VPGATKDVLA ADAMCCRAAL STVVATSIVL VILGVLVASL BACU006500/1-996 MEPTAGDVQL VPRATKDIQA TDAACCRAAL SAMVATSIVM VTLGVLVASL bmy_06686T0/1-774 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000330264/1-1059 STQGFHVDHT AELRGIRWTS SLRRETSDYH RTLTPTLEAL ---------- ENSBTAP00000000958/1-1095 STQGVDVEHM AELRGIRFAP SLQQETSEYY RTLTPALEML FVSSFQETEL BACU006500/1-996 STQGVNVEHT AELRGIRFAP SLQQETSDYY RTLTPTLETL FVSSFRETEL bmy_06686T0/1-774 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000330264/1-1059 ---------- ---------- ----LHFLLR PLQTLSLGLE EELLQRGIRA ENSBTAP00000000958/1-1095 ESSCLGCTVL SYWEGNASVL VRFRLHFLLL ALWTPSPGLE EQLLQRGLHA BACU006500/1-996 EASCVDCTVL SYWEGNASIL VRFRLHFMQP ALRTPSPGLE EELLQRGLRE bmy_06686T0/1-774 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000330264/1-1059 RLREHGISLA AYGTIVSAEL TG-------- ---------- ---------- ENSBTAP00000000958/1-1095 RLQGLGIPLA PYGTIVSAQL TG-------- ---------- ---------- BACU006500/1-996 RLQGRGIPLA PYGTIVSAQL TGEWPQRQGD VGRDQRDVLG KGSRVKVALN bmy_06686T0/1-774 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000330264/1-1059 -RHKGPLAER DFKSGRCPGN SFSCGNSQCV TKVNPECDDQ EDCSDGSDEA ENSBTAP00000000958/1-1095 -SQKGPLTER DLKSGHCPGN VFSCGNSQCV TKVNPECDDT ADCSDGSDEA BACU006500/1-996 LSQKGPLTER DLKSGRCPGN AFSCGNSQCV TKVNPECDDT ADCSDGSDEA bmy_06686T0/1-774 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000330264/1-1059 HCECGLQPAW RMAGRIVGGM EASPGEFPWQ ASLRENKEHF CGAAIINARW ENSBTAP00000000958/1-1095 HCDCGLQPGW KTAGRIVGGV EASPGEFPWQ VSLRENNEHF CGAAIISARW BACU006500/1-996 HCDCGLQPGW RTAGRIVGGV EASPGEFPWQ VSLRENNEHF CGAAIIGARW bmy_06686T0/1-774 ---------- ---------- ---------- ---------- ---------- 301 350 ENSP00000330264/1-1059 LVSAAHCFNE FQDPTKWVAY VGATYLSGSE ASTVRAQVVQ IVKHPLYNAD ENSBTAP00000000958/1-1095 LVSAAHCFNE FQDSPEWVAY VGTTYLSGSE ASMVRARVAR IITHPSYNSD BACU006500/1-996 LVSAAHCFNE FQDPTEWVAY AGSTYLSGSE ASTVRARVAR IITHPFYNSD bmy_06686T0/1-774 ---------- ---------- ---------- --MVRARVAR IITHPFYNSD 351 400 ENSP00000330264/1-1059 TADFDVAVLE LTSPLPFGRH IQPVCLPAAT HIFPPSKKCL ISGWGYLKED ENSBTAP00000000958/1-1095 TADFDVAVLE LGRPLPFSRH VQPVCLPAAS HIFPPRKKCL ISGWGYLKEN BACU006500/1-996 TADFDVAVLE LGGPLPFSRH VQPVCLPAAV HVFPPRKKCL ISGWGYLKED bmy_06686T0/1-774 TADFDVAVLE LGGPLPFSRH VQPVCLPAAV HVFPPRKKCL ISGWGYLKED 401 450 ENSP00000330264/1-1059 FLVKPEVLQK ATVELLDQAL CASLYGHSLT DRMVCAGYLD GKVDSCQGDS ENSBTAP00000000958/1-1095 FLVKPEMLQK ATVELLDQAL CTSLYGHSLT DRMVCAGYLD GKVDSCQGDS BACU006500/1-996 FLVKPEMLQK ATVELLDQAL CASLYGHSLT DRMLCAGYLD GKVDSCQGDS bmy_06686T0/1-774 FLVKPEMLQK ATVELLDQAL CASLYGHSLT DRMLCAGYLD GKVDSCQGDS 451 500 ENSP00000330264/1-1059 GGPLVCEEPS GRFFLAGIVS WGIGCAEARR PGVYARVTRL RDWILEATTK ENSBTAP00000000958/1-1095 GGPLVCEESS GRFFLAGIVS WGIGCAEAQH PGVYARVTSL RDWILETIAS BACU006500/1-996 GGPLVCEEPS GRFFLAGIVS WGIGCAEARH PGVYARVTRL RDWILEAIAA bmy_06686T0/1-774 GGPLVCEEPS GRFFLAGIVS WGIGCAEARH PGVYARVTRL RDWILEAIAA 501 550 ENSP00000330264/1-1059 ASMPLAPTMA PAPAAPSTAW PTSPESPVVS TPTKSMQALS TVPLDWVTVP ENSBTAP00000000958/1-1095 ASKPPAPTVA LASTTLSTAW PTSPKSLVTD TLTKPTLAPS TMPLDLATAS BACU006500/1-996 ASKPPAPTAA PAPAIPSTAW PTSPQSPVVN TPTRPTLAPS AVPLDSATAS bmy_06686T0/1-774 ASKPPAPTAA PAPAIPSTAW PTSPQSPVVN TPTRPTLAPS AVPLDSATAS 551 600 ENSP00000330264/1-1059 KLQECGARPA MEKPTRVVGG FGAASGEVPW QVSLKEGSRH FCGATVVGDR ENSBTAP00000000958/1-1095 KPQECGARPA LEKPTRIVGG LGASLGEVPW QVSLKEGSRH FCGATVVGDR BACU006500/1-996 KPQECGARPA LEKPTRIVGG FGAASGEVPW QVSLKEGSRH FCGATVVGDR bmy_06686T0/1-774 KPQEG----- ---------- -NEARGGLP- --ALPTAS-- WCPPRGLGPA 601 650 ENSP00000330264/1-1059 WL---LSAAH CFNH------ ---------- --TKVEQVRA HLGTASLLGL ENSBTAP00000000958/1-1095 WL---LSAAH CFNH------ ---------- --TKVELVRA QLGTASLSGV BACU006500/1-996 WL---LSAAH CFNHSARCPG GGRESERPLP GSTKVELVWA HLGSASLSGV bmy_06686T0/1-774 ALPGALGAAG SLSG------ -------PLP GSTKVELVWA HLGTASLSGV 651 700 ENSP00000330264/1-1059 GGSPVKIGLR RVVLHPLYNP GILDFDLAVL ELASPLAFNK YIQPVCLPLA ENSBTAP00000000958/1-1095 GGSPVKVGLR RVVLHPQYNP SILDFDVAVL ELARPLVFNK YVQPVCLPLA BACU006500/1-996 GGGPVEMGLR RAVLHPQYNP SILDFDVAVL ELARPLVFNK YVQPVCLPLA bmy_06686T0/1-774 GGSPVKMGLR RAVLHPQYNP SILDFDVAVL ELARPLVFNK YVQPVCLPLA 701 750 ENSP00000330264/1-1059 IQKFPVGRKC MISGWGNTQE GNATKPELLQ KASVGIIDQK TCSVLYNFSL ENSBTAP00000000958/1-1095 IQKFPVGRKC VISGWGNTQE GNATKPDLLQ QASVGIIDHK ACSALYNFSL BACU006500/1-996 IQKFPVGRKC VISGWGNTQE GNATKPDLLQ RASVGIIDQK ACSALYNFSL bmy_06686T0/1-774 IQKFPVGRKC VISGWGNTQE GNATKPDLLQ RASVGIIDQK ACSALYNFSL 751 800 ENSP00000330264/1-1059 TDRMICAGFL EGKVDSCQGD SGGPLACEEA PGVFYLAGIV SWGIGCAQVK ENSBTAP00000000958/1-1095 TDRMICAGFL EGKVDSCQGD SGGPLACEET PGVFYLAGIV SWGIGCAQVK BACU006500/1-996 TDRMICAGFL EGKVDSCQGD SGGPLACEEM PGVFYLAGIV SWGIGCAQAR bmy_06686T0/1-774 TDRMICAGFL EGKVDSCQGD SGGPLACEET PGVFYLAGIV SWGIGCAQAK 801 850 ENSP00000330264/1-1059 KPGVYTRITR LKGWILEIMS SQPLPMSPPS TTRMLATTSP -RTTAGLTVP ENSBTAP00000000958/1-1095 KPGVYTRITR LKGWILATMS SHLLPTAPLP TTRMPTSSHA TRTTAGLTVP BACU006500/1-996 KPGVYTRITR LKGWILAIMS SHSLGTPPPS TTRTPTSSHP ARTTAGLTVL bmy_06686T0/1-774 KPGVYTRITR LKGWILDIMS SHSLSTHPLS TTRTLTSSHP ARTTAGLTVL 851 900 ENSP00000330264/1-1059 GATPSRPTPG AASRVTGQPA NSTLSAVSTT ARGQTPFPDA PEATTHTQLP ENSBTAP00000000958/1-1095 EVMASTPTPW ATSRVTSQPA DRTTTTVTST PRGQTPLPPA PKTTVGAQLP BACU006500/1-996 GVVASRPTPW VTSRVTSQPA NRTTTAMTTT TRGQTPLPHA TETTVGSQPP bmy_06686T0/1-774 GVVASRPTPW ATSRVTSQPA NRT-----TT TRGQTPLPHA TETTVGSQLP 901 950 ENSP00000330264/1-1059 DCGLAP-AAL TRIVGGSAAG RGEWPWQVSL WLRRREHRCG AVLVAERWLL ENSBTAP00000000958/1-1095 DCGLAPAAAL TRIVGGSAAG RGEWPWQVSL WLRRREHRCG AVLVAERWLL BACU006500/1-996 ---------- ---------- ---------- ---------- ---------- bmy_06686T0/1-774 DCGLAPAAAL TRIVGGSAAG RGEWPWQVSL WLRRREHRCG AVLVAERWLL 951 1000 ENSP00000330264/1-1059 SAAHCFDVYG DPKQWAAFLG TPFLSGAEGQ LERVARIYKH PFYNLYTLDY ENSBTAP00000000958/1-1095 SAAHCFDVYG DPKQWAAFLG TPFLSGADGQ LERVARIHKH PFYNLYTLDY BACU006500/1-996 ---------- ---------- ---------- ---------- ---------- bmy_06686T0/1-774 SAAHCFDVYG DPKQWAAFLG TPFLSGAEGQ LERVARIHKH PFYNLYTLDY 1001 1050 ENSP00000330264/1-1059 DVALLELAGP VRRSRLVRPI CLPEPAPRPP DGTRCVITGW GSVREGGSMA ENSBTAP00000000958/1-1095 DVALLELVGP VRRSRLVRPI CLPEPAPRPP DGARCVITGW GSVREGGSMA BACU006500/1-996 ---------- ---------- ---------- ---------- ------GSMA bmy_06686T0/1-774 DVALLELAGP VRRSRLVRPI CLPDPAPRPP DGARCVITGW GSVREGGSMA 1051 1100 ENSP00000330264/1-1059 RQLQKAAVRL LSEQTCRRFY PVQISSRMLC AGFPQGGVDS CSGDAGGPLA ENSBTAP00000000958/1-1095 RQLQKAAVRL LSEQTCRRFY PVQISSRMLC AGFPQGGVDS CSGDAGGPLA BACU006500/1-996 RQLQKAAVRL LSEQMCRRFY PVQISSRMLC AGFPQGGVDS CSGDAGGPLA bmy_06686T0/1-774 RQLQKAAVRL LSEQTCRRFY PVQMSSRMLC AGFPQGGVDS CSGDAGGPLA 1101 1150 ENSP00000330264/1-1059 CREPSGRWVL TGVTSWGYGC GRPHFPGVYT RVAAVRGWIG QHIQE ENSBTAP00000000958/1-1095 CREPSGRWVL TGVTSWGYGC GRPQFPGVYT RVAAVRGWIG QNIQE BACU006500/1-996 CREPSGRWVL TGITSWGYGC GRPQFPGVYT RVAAVRGWIG QNIQE bmy_06686T0/1-774 CREPSGRWVL TGITSWGYGC GRPQFPGVYT RVAAVRGWIG QNIQE