KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:12:52 2014 Check: 00 .. Name: ENSP00000170564/1-931 Len: 972 Check: 1310 Weight: 1.00 Name: ENSTTRP00000011591/1-933 Len: 972 Check: 7393 Weight: 1.00 Name: ENSBTAP00000000963/1-930 Len: 972 Check: 4201 Weight: 1.00 Name: bmy_21713T0/1-922 Len: 972 Check: 3934 Weight: 1.00 Name: BACU000565/1-922 Len: 972 Check: 4651 Weight: 1.00 // 1 50 ENSP00000170564/1-931 MAARDSDSEE DLVSYGTGLE PLEEGERPKK PIPLQDQTVR DEKGRYKRFH ENSTTRP00000011591/1-933 MAALGRGSDE DLVSYGTGLE LLEEGERPKK PIPLQDQTVR DEKGRYKRFH ENSBTAP00000000963/1-930 MAALDSDSDE DLVSYGTGLE PLEEGERPKK PIPLQDQTVR DEKGRYKRFH bmy_21713T0/1-922 MAALDRDSDE DLVSYGTGLE LLEEGERPKK PIPLQDQTVR DEKGRYKRFH BACU000565/1-922 MAALDGDSDE DLVSYGTGLE LLEEGERPKK PIPLQDQTVR DEKGRYKRFH 51 100 ENSP00000170564/1-931 GAFSGGFSAG YFNTVGSKEG WTPSTFVSSR QNRADKSVLG PEDFMDEEDL ENSTTRP00000011591/1-933 GAFSGGFSAG YFNTVGSKEG WTPSSFVSSR QNRADKSVFG PEDFMDEEDL ENSBTAP00000000963/1-930 GAFSGGFSAG YFNTVGSKEG WTPSSFVSSR QNRADKSVLG PEDFMDEEDL bmy_21713T0/1-922 GAFSGGFSAG YFNTVGSKEG WTPSSFVSSR QNRADKSVFG PEDFMDEEDL BACU000565/1-922 GAFSGGFSAG YFNTVGSKEG WTPSSFVSSR QNRADKSVFG PEDFMDEEDL 101 150 ENSP00000170564/1-931 SEFGIAPKAI VTTDDFASKT KDRIREKARQ LAAATAPIPG ATLLDDLITP ENSTTRP00000011591/1-933 SEFGIAPKAI VTTDDFASKT KDRIREKARQ LAAATAPIPG ATLLDDLITP ENSBTAP00000000963/1-930 SEFGIAPKSI VTTDDFASKT KDRIREKARQ LAAATAPIPG ATLLDDLITP bmy_21713T0/1-922 SEFGIAPKAI VTTDDFASKT KDRIREKARQ LAAATAPIPG ATLLDDLITP BACU000565/1-922 SEFGIAPKAI VTTDDFASKT KDRIREKARQ LAAATAPIPG ATLLDDFITP 151 200 ENSP00000170564/1-931 AKLSVGFELL RKMGWKEGQG VGPRVKRRPR RQKPDPGVKI YGCALPPGSS ENSTTRP00000011591/1-933 AKLSVGFELL RKMGWKEGQG IGPRVKRRPR RQKSDPGVKI YGCALPPGGS ENSBTAP00000000963/1-930 AKLSVGFELL RKMGWKEGQG IGPRVKRRPR RQKPDPGVKI YGCALPPGGS bmy_21713T0/1-922 AKLSVGFELL RKMGWKEGQG IGPR------ ---------- ---------- BACU000565/1-922 AKLSVGFELL RKMGWKEGQG IGPRVKRRPR RQKPDPGVKI YGCALPPGGS 201 250 ENSP00000170564/1-931 EGSEGEDDDY LPDNVTFAPK DVTPVDFTPK DNVHGLAYKG LDPHQALFGT ENSTTRP00000011591/1-933 EGSEDEDDDY LPENVTFAPK DVTPVDFTPK DNVHGLAYKG LDPHQALFGT ENSBTAP00000000963/1-930 EGSEDEDDDY LPENVTFAPK DVTPVDFTPK DNVHGLAYKG LDPHQALFGT bmy_21713T0/1-922 ----DEDDDY LPENVTFAPK DVTPVDFTPK DNVHGLAYKG LDPHQALFGT BACU000565/1-922 EGSEDEDDDY LPENVTFAPK DVTPVDFTPK DNVHGLAYKG LDPHQALFGT 251 300 ENSP00000170564/1-931 SGEHFNLFSG GSERAGD-LG EIGLNKGRKL GISGQAFGVG ALEEEDDDIY ENSTTRP00000011591/1-933 SREHVSLFSG GPEGANNLLG DVGVNKGRKL GISGQXXXXX XXXXXXXXXX ENSBTAP00000000963/1-930 SGEHFNLFSG GPEETGDLLG DIGVNKGRKL GISGQAFGVG ALEEEDDDIY bmy_21713T0/1-922 SGEHVNLFSG GPEGANNLLG DVGVNKGRKL GISGQAFGVG ALEEEDDDIY BACU000565/1-922 SGEHVNLFSG GPEGANNLLG DVGVNKGRKL GISGQAFGVG ALEEEDDDIY 301 350 ENSP00000170564/1-931 ATETLSKYDT VLKDEEPGDG LYGWTAPRQY KNQKESEKDL RYVGKILDGF ENSTTRP00000011591/1-933 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXSEKEL RYVGKILDGF ENSBTAP00000000963/1-930 ATETLSKYDT VLKDEEPGDG LYGWTAPRQY KSQKESEKDL CYVGKILDGF bmy_21713T0/1-922 ATETLSKYDT ILKDEEPGDG LYGWTAPRQY KNQKESEKEL RYVGKILDGF BACU000565/1-922 ATETLSKYDT ILKDEEPGDG LYGWTAPRQY KNQKESEKEL RYVGKILDGF 351 400 ENSP00000170564/1-931 SLASKPLSSK KIYPPPELPR DYRPVHYFRP MVAATSENSH LLQVLSESAG ENSTTRP00000011591/1-933 SLASKPLSSK KIYPPPELPR DYRPVHYFRP VVAANSENSH VLQVLSESAG ENSBTAP00000000963/1-930 SLASKPLSSK KIYPPPELPR DYRPVHYFRP VVAATSENSH LLQVLSESAG bmy_21713T0/1-922 SLASKPLSSK KIYPPPELPR DYRPVHYFRP VVAATSENSH LLQVLSESAG BACU000565/1-922 SLASKPLSSK KIYPPPELPR DYRPVHYFRP LVAATSENSH LLQVLSESAG 401 450 ENSP00000170564/1-931 KATPDPGTHS KHQLNASKRA EL---LGETP IQGSATSVLE FLSQKDKERI ENSTTRP00000011591/1-933 KPTHDPGTQS TH-LNGSQKG EMTKKXXXXX XXXAPTSVLE FLSEKDKERL ENSBTAP00000000963/1-930 KPTNDPGTRS RHQLNACKRG EL---LGETP IQGAPTSVLE FLSQKDKERL bmy_21713T0/1-922 KPTHDPGTYS RHQLNASKRG EL---LGETP IQGAPTSVLE FLSEKDKERL BACU000565/1-922 KPTHDPGTHS RHQLNASKRG EL---LGETP IQGAPTSVLE FLSEKDKERL 451 500 ENSP00000170564/1-931 KEMKQATDLK AAQLKARSLA QNAQSSRAQL SPAAAAGHCS WNMALGGGTA ENSTTRP00000011591/1-933 KEMKQATDLK AAQLKARSLA QNASSSRPQP S-SPDVGHCS WHVALSGGTA ENSBTAP00000000963/1-930 KEVKQATDLK AAQLRARSLA QSASGSRPQP L-SPDVGHCS WHMALSGGMA bmy_21713T0/1-922 KEMKQATDLK AAQLKARSLA QNASSSRPQP S-SPDVGHCS WHMALSGGTA BACU000565/1-922 KEMKQATDLK AAQLKARSLA QNASSSRPQP S-SPDVGHCS WHVALSGGTA 501 550 ENSP00000170564/1-931 TLKASNFKPF AKDPEKQKRY DEFLVHMKQG QKDALERCLD PSMTEWERGR ENSTTRP00000011591/1-933 PVRASNFKPF AKDPEKQKRY EEFLVNVKQG QKDALECCLD PSMTEWERRR ENSBTAP00000000963/1-930 STRTSNFKPF AKDPEKQKRY EEFLANMKRG QKDALERCLD PGMTEWERGR bmy_21713T0/1-922 PVRASNFKPF AKEPEKQKRY EEFLVNVKRG QKDALECCLD PSMTEWERRR BACU000565/1-922 PVRASNFKPF AKEPEKQKRY EEFLVNVKRG QKDALECCLD PTMTEWERRR 551 600 ENSP00000170564/1-931 ERDEFARAAL LYASSHSTLS SRFTHAKEED DSDQVEVPRD QENDVGDKQS ENSTTRP00000011591/1-933 ERDEFSQAAL LYVSSHSTLS SRFTHAKMED DSEQVEVPRD QENDVSDKQS ENSBTAP00000000963/1-930 ERDEFARAAL LYASSHSTLS SRFTHAQEED DSEQVEVPRD QENDVSDKQS bmy_21713T0/1-922 ERDEFAQAAL LYVSSHSTLS SRFTHAKIED DSDQVEVPRD QENDVSDKQS BACU000565/1-922 ERDEFAQAAL LYVSSHSTLS SRFTHAKMED DSDQVEVPRD QENDVSDKQS 601 650 ENSP00000170564/1-931 AVKMKMFGKL TRDTFEWHPD KLLCKRFNVP DPYPDSTLVG LPRVKRDKYS ENSTTRP00000011591/1-933 AVKMKLFGKL TRDTFEWHPD KLLCKRFNVP DPYPSSTLVG LPRVKRDKYS ENSBTAP00000000963/1-930 AVKMKMFGKL TRDTFEWHPD KLLCKRFNVP DPYPDSTLVG LPRVKRDKYS bmy_21713T0/1-922 AVKMKLFGKL TRDTFEWHPD KLLCKRFNVP DPYPSSTLVG LPRVKRDKYS BACU000565/1-922 AVKMKLFGKL TRDTFEWHPD KLLCKRFNVP DPYPSSTLVG LPRVKRDKYS 651 700 ENSP00000170564/1-931 VFNFLTLPET ASLPTTQASS EKVSQHRGPD KSRKPSRWDT SKHEKKEDSI ENSTTRP00000011591/1-933 VFNFLTVPET ASSPATQASS EKVPQHRGPD KSRKPSRWDT SKQEKKEDSI ENSBTAP00000000963/1-930 VFSFLTIPET ASSPVTQASS EKVAQHRASD KSRKPSRWDT SKEEKKEDSI bmy_21713T0/1-922 VFNFLTVPET ASSPATQASS EKVPQHRGPD KSRKPSRWDT SKQEKKEDSI BACU000565/1-922 VFNFLTVPET ASSPATQASS EKVPQHQGPD KSRKPSRWDT SKQEKKDDSI 701 750 ENSP00000170564/1-931 SEFLSLARSK AEPPKQQSSP LVNKEEEHAP ELSANQTVNK DVDAQAEGEG ENSTTRP00000011591/1-933 SEFLSLARSK VGPPKQESSP LINKEEEHTM ESVSNE-VNK GVDSQTEGEG ENSBTAP00000000963/1-930 SEF-SLARSK VGPAKPEPSP LVNKEEARAT ESVSNKVVNK DVDSQTEGEG bmy_21713T0/1-922 SEFLSLARSK VGPPKQESSP LVNKEEEHTM ESVSNK-VNK GVDSQTEGEG BACU000565/1-922 SEFLSLARSK VGPPKQESSP LVNKEEEHTV ESVSDK-VNK GVDSQTEGEG 751 800 ENSP00000170564/1-931 SRPSMDLFRA IFASSSDEKS SSSEDEQGDS EDDQAGSGEA NFQSSQDTDL ENSTTRP00000011591/1-933 SRPSMDLFKA IFASSSDEKS SSSEDEQGDS EDDQEGTREA DFKGSQEADM ENSBTAP00000000963/1-930 SRPSMDLFKA IFASSSDEKS SSSEDEQGDS EDDQEGTREA DFKSSQETDL bmy_21713T0/1-922 SRPSMDLFKA IFASSSDEKS SSSEDEQGDS EDDEEGTREA DVKASE---- BACU000565/1-922 SRPSMDLFKA IFASSSDEKS SSSEDEQGDS EDDQEGTREA DVKGSQETDL 801 850 ENSP00000170564/1-931 GETSSVAHAL VPAPQEPPPS FPIQKMQIDE REEFGPRLPP VFCPNARQTL ENSTTRP00000011591/1-933 VETSSVAQAS EPAPQEPAPF FPIQKIQIDE REEFGPQLPP VFCPNARQKL ENSBTAP00000000963/1-930 VEASSVAQAS EPAPQEPAPF FPIQKMQIDE REAFGPRLPP VFCPNARQKL bmy_21713T0/1-922 ---------- -PAPQEPAPF FPIQKIQIDE REEFGPQLPP VFCANARQKL BACU000565/1-922 VETLSVAQAS EPAPQEPAPF FPIQKIQIDE REEFGPQLPP VFCANARQKL 851 900 ENSP00000170564/1-931 EVPQKEKHKK NKDKHKAKKE HRRKKEKKKK HRKHKHKGKQ KNKKPEKSSS ENSTTRP00000011591/1-933 EAPLKEKHKK NKEKHKTKKE HRRKKEKKKK HRKHKHKGKQ KNKKSEKSSS ENSBTAP00000000963/1-930 EAPLKEKHKK NKEKHKTKKE HRRKKEKKKK HRKHKHKGKQ KNKKSEKSSS bmy_21713T0/1-922 EAPLKEKHKK NKEKHKTKKE HRRKKEKKKK HXKHKHKGKQ KNKKPEKSSS BACU000565/1-922 EAPLKEKHKK NKEKHKTKKE HRRKKEKKKK HRKHKHKGKQ KNKKSEKSSS 901 950 ENSP00000170564/1-931 SESSDSSDSQ SDEE-TADVS PQELLRRLKS LPLRRQ---- ---------- ENSTTRP00000011591/1-933 SESTNSSDSQ SDEEGAADLS PQELLRRLKR LPLRRQ---- ---------- ENSBTAP00000000963/1-930 SESTDSSDSQ S-EEGPTDLS PQELLRRLKR LPLRRQ---- ---------- bmy_21713T0/1-922 SESTDSSDSQ SDEEGATDLS PQELLRRLKR LPLRRHLPWK CQRKKLRLYS BACU000565/1-922 SESTDSSDSQ SDEEGAADVS PQELLRR--- ---------- ---------- 951 1000 ENSP00000170564/1-931 ---------- ---------- -- ENSTTRP00000011591/1-933 ---------- ---------- -- ENSBTAP00000000963/1-930 ---------- ---------- -- bmy_21713T0/1-922 LIKMAFFYFF LDFSFPETFK KK BACU000565/1-922 ---------- ---------- --