KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:12:53 2014 Check: 00 .. Name: ENSP00000301962/1-1316 Len: 1347 Check: 1882 Weight: 1.00 Name: ENSTTRP00000005000/1-1320 Len: 1347 Check: 6176 Weight: 1.00 Name: ENSBTAP00000000967/1-1333 Len: 1347 Check: 3488 Weight: 1.00 Name: bmy_20986T0/1-1153 Len: 1347 Check: 4912 Weight: 1.00 Name: BACU012126/1-1279 Len: 1347 Check: 5448 Weight: 1.00 // 1 50 ENSP00000301962/1-1316 MTIVDKASES SDPSAYQNQP GSSEAVSPGD MDAGSASWGA VSSLNDVSNH ENSTTRP00000005000/1-1320 MTTGDKASES SDPSTCQNQP GSSEAVSPGD MEAGSASWGT VSSLNDVSSH ENSBTAP00000000967/1-1333 MTIVDKASES SDPSTYQNQP GSSEAVSPGD MDAGSASWGA VSSLNDVSNH bmy_20986T0/1-1153 ---------- ---------- ---------- ---------- ---------- BACU012126/1-1279 MTIVDKASES SDPSTYQNQP GSSEAVSPGD MDAGSASWGA VSSLNDVSNH 51 100 ENSP00000301962/1-1316 TLSLGPVPGA VVYSSSSVPD KSKPSPQKDQ ALGDGIAPPQ KVLFPSEKIC ENSTTRP00000005000/1-1320 ALSLGPVPGA VVYSSSPVPE KSKPSPPKDQ ALGDGIAPPE KILFPSEKIC ENSBTAP00000000967/1-1333 TLSLGPVPGA VVYSSSSVPE KSKPSPQKDQ ALGDGIAPPQ KVLFPSEKIC bmy_20986T0/1-1153 ---------- ---------- ---------- ---------- ---------- BACU012126/1-1279 TLSLGPVPGA VVYSSSSVPE KSKLSPQKDQ ALGDGIAPPQ KVLFPSEKIC 101 150 ENSP00000301962/1-1316 LKWQQTHRVG AGLQNLGNTC FANAALQCLT YTPPLANYML SHEHSKTCHA ENSTTRP00000005000/1-1320 LKWQQTHRVG AGLQNLGNTC FANAALQCLT YTPPLANYML SHEHSKTXXX ENSBTAP00000000967/1-1333 LKWQQTHRVG AGLQNLGNTC FANAALQCLT YTPPLANYML SHEHSKTCHA bmy_20986T0/1-1153 ---------- ---------- ---------- ---------- ---------- BACU012126/1-1279 LKWQQTHRVG AGLQNLGNTC FANAALQCLT YTPPLANYML SHEHSKTCHA 151 200 ENSP00000301962/1-1316 EGFCMMCTMQ AHITQALSNP GDVIKPMFVI NEMRRIARHF RFGNQEDAHE ENSTTRP00000005000/1-1320 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXIARHF RFGSQ-DAHE ENSBTAP00000000967/1-1333 EGFCMMCTMQ AHITQALSNP GDVIKPMFVI NEMRRIARHF RFGNQEDAHE bmy_20986T0/1-1153 ----MMCTMQ AHITQALSNP GDVIKPMFVI NEMRRIARHF RFGSQEDAHE BACU012126/1-1279 EGFCMMCTMQ AHITQALSNP GDVIKPMFVI NEMRRIARHF RFGSQEDAHE 201 250 ENSP00000301962/1-1316 FLQYTVDAMQ KACLNGSNKL DRHTQATTLV CQIFGGYLRS RVKCLNCKGV ENSTTRP00000005000/1-1320 FLQHTVDAMQ KACLNGSN-L DRHTQATTLV CQIFGGYLRS RVKCLNCKGV ENSBTAP00000000967/1-1333 FLQYTVDAMQ KACLNGSNKL DRHTQATTLV CQIFGGYLRS RVKCLNCKGV bmy_20986T0/1-1153 FLQYTVDAMQ KACLNGSNKL DRHTQATTLV CQIFGGYLRS RVKCLNCKGV BACU012126/1-1279 FLQYTVDAMQ KACLNGSNKL DRHTQATTLV CQIFGGYLRS RVKCLNCKGV 251 300 ENSP00000301962/1-1316 SDTFDPYLDI TLEIKAAQSV NKALEQFVKP EQLDGENSYK CSK---CKKM ENSTTRP00000005000/1-1320 SDTFDPYLDI TLEIKAAQSV NKALEQFVKP EQLDGENSYK CSK---CKNM ENSBTAP00000000967/1-1333 SDTFDPYLDI TLEIKAAQSV NKALEQFVKP EQLDGENSYK CSK---CKKM bmy_20986T0/1-1153 SDTFDPYLDI TLEIKAAQSV NKALEQFVKP EQLDGENSYK CSKYDGCKKM BACU012126/1-1279 SDTFDPYLDI TLEIKAAQSV NKALEQFVKP EQLDGENSYK CSK---CKKM 301 350 ENSP00000301962/1-1316 VPASKRFTIH RSSNVLTLSL KRFANFTGGK IAKDVKYPEY LDIRPYMSQP ENSTTRP00000005000/1-1320 VPASKRFTIH RSSNVLTLSL KRFANFTGGK IAKDVKYPEY LDIRPYMSQP ENSBTAP00000000967/1-1333 VPASKRFTIH RSSNVLTLSL KRFANFTGGK IAKDVKYPEY LDIRPYMSQP bmy_20986T0/1-1153 VPASKRFTIH RSSNVLTLSL KRFANFTGGK IAKDVKYPEY LDIRPYMSQP BACU012126/1-1279 VPASKRFTIH RSSNVLTLSL KRFANFTGGK IAKDVKYPEY LDIRPYMSQP 351 400 ENSP00000301962/1-1316 NGEPIVYVLY AVLVHTGFNC HAGHYFCYIK ASNGLWYQMN DSIVSTSDIR ENSTTRP00000005000/1-1320 NGEPIIYDLY AVLVHTGFNC HAGHYFCYIK ASNDLWYQMN DSIVSISDIR ENSBTAP00000000967/1-1333 NGEPIIYVLY AVLVHTGFNC HAGHYFCYIK ASNGLWYQMN DSIVSTSDIR bmy_20986T0/1-1153 NGEPIIYVLY AVLVHTGFNC HAGHYFCYIK ASNGLWYQMN DSIVSTSDIR BACU012126/1-1279 NGEPIIYVLY AVLVHTGFNC HAGHYFCYIK ASNGLWYQMN DSIVSTSDIR 401 450 ENSP00000301962/1-1316 SVLSQQAYVL FYIRSHDVKN GGELTHPTHS PGQSSPRPVI SQRVVTNKQA ENSTTRP00000005000/1-1320 SVLSQQAYVL FYIRSHDVKI GGELTHSAHS PGQSSPQPVI SQRVVSNTQA ENSBTAP00000000967/1-1333 SVLSQQAYVL FYIRSHDVKN GGELTHSAHS PGQSSPRPVI SQRVVNSKQA bmy_20986T0/1-1153 SVLSQQAYVL FYIRSHDVKN GGELTHSAHS PGQSSPRP-- ---------- BACU012126/1-1279 SVLSQQAYVL FYIRSHDVKN GGELTHSAHS PGQSSPRPVI SQRVVSNKQA 451 500 ENSP00000301962/1-1316 APGFIGPQLP SHMIKNPPHL NGTGPLKDTP SSSMSSPNGN SSVNRASPVN ENSTTRP00000005000/1-1320 ASGFIGPQLP SHMMKXXXXX XXXXXXXXXX XXXXXSPNGN SSVSRTGPVN ENSBTAP00000000967/1-1333 ASGFIGPQLP SHMMKNPPHL NGTGPLKETP SSPMSGPSGN SSVSRTGPVS bmy_20986T0/1-1153 ---------- -----NPPHL NGTGPLKETP SSSMSSPNGN SNVSRTGPVN BACU012126/1-1279 ASGFIGPQLP SHMMKNPPHL NGTGPLKETP SSSMSSPNGN SNVSRTGPVN 501 550 ENSP00000301962/1-1316 ASASVQNWSV NRSSVIPEHP KKQKITISIH NKLPVRQCQS QPNLHSNSLE ENSTTRP00000005000/1-1320 ASTSVQDWPV NRPSAIPEHP KKQKITISIH SKLPVQKMQP QPTLHSSSSE ENSBTAP00000000967/1-1333 ASPSVQNWSV NRPSVIPEHP KKQKITISIH NKLPVRQGQS QSNLHSNSLE bmy_20986T0/1-1153 ASTSVQNWSV NRPSVIPEHP KKQKITISIH NKLPVCQGQS QPSLHSNSLE BACU012126/1-1279 ASTSVQNWSV NRPSVIPEHP KKQKITISIH NKLPVRQGQS QPTLHSNSLE 551 600 ENSP00000301962/1-1316 NPTKPVPSST I-TNSAVQST SNASTMSVSS KVTKPIPRSE SCSQPVMNGK ENSTTRP00000005000/1-1320 SANKPAPSST ITTSTAIQST SSAPVMPASS KVTKQIALRE SCPEPVTNGR ENSBTAP00000000967/1-1333 HPNKPAPSST ITTSSAIQST SSAPTPPASS KVPKQMAPRE ACSRPMMNGR bmy_20986T0/1-1153 SPDKPAPSSA IATSSAIQST SSAPTMPASS EVTKQITLRE ACPEPVMNGR BACU012126/1-1279 SPNKPAPSST ITTSSAIQST SSAPMMPASS KVTKQITLRE SCPEPMMNGR 601 650 ENSP00000301962/1-1316 SKLNSSVLVP YGAESSEDSD EESKGLGKEN GIGTIVSSHS PGQDAEDEEA ENSTTRP00000005000/1-1320 SKLSSGVLVP YGAESSEESD EEAKGLGKEN SLRPAESARA PAPLAEDVGA ENSBTAP00000000967/1-1333 PRLSAGVLVP YGAESSEESD EEAKGLGQEN GRGLTESACS PALDAEDGDA bmy_20986T0/1-1153 SKLSSGVLVP YGAESSEESD EEAKGLGKEN GLGPPESARA PAPEAEDGGA BACU012126/1-1279 SKLSSGVLVP YGAESSEESD EEAKGLGKEN GLGPPESACA PAPEAEDVGA 651 700 ENSP00000301962/1-1316 TPHELQEPMT LNGANSADSD SDPKENGLAP DGASCQGQPA LHSENPFAKA ENSTTRP00000005000/1-1320 SPHELREPVA LNGATS--TD SDPKENSLPS GAASCHVQPA LHSENPFSKA ENSBTAP00000000967/1-1333 SPHELQEPVA LNGATG--LD SDPTENGLPS DGAPCPGQPA LHSEHPFPKA bmy_20986T0/1-1153 SPHELREPVA LNGATS--TD SDPKENGLPS DAATCQVQPA LHSENPFSKA BACU012126/1-1279 SPHELREPVA LNGATS--TD SDPKENGLPS DAATCQVQPV LHSENAFSKA 701 750 ENSP00000301962/1-1316 NGLPGKLMPA PLLSLPEDKI LETFRLSNKL KGSTDEMSAP GAERGPPEDR ENSTTRP00000005000/1-1320 NSLPGKLMPA PLPLLPEDKI LETFKLGSKG KGSTDEMSTT GTEERPPQDP ENSBTAP00000000967/1-1333 NGLPGKLMPA PLPPLPEDKI LETFKLGSKA KGSAEETRTP GSEERPLEHP bmy_20986T0/1-1153 NGLPGKLMPA PLPPLPEDKI LETFKLSSKG KGSTDETSTT GTEEGPPQDP BACU012126/1-1279 NGLPGKLMPA PLPPLPEDKI LETFKLGSKG KGPTDEASTT GTEERPPQDP 751 800 ENSP00000301962/1-1316 DAEPQPGSPA A-ESLEEPDA AAGLSST-KK APPPRDPGTP ATKEGAWEAM ENSTTRP00000005000/1-1320 EAELEAGSSA P-DSRENLEL VMSLSSKFKK VLLPSDASIK PTKEEVSENI ENSBTAP00000000967/1-1333 EAELEAGRSP PGDARDNLES VSNLSSKFKK ASPPSDPSIK PTKEEVSERV bmy_20986T0/1-1153 EAELEAGSSA P-DSRENLEL VTSLSSKFKK VLSPSDPSIK PTKEEVSENI BACU012126/1-1279 EADLEAGSSA P-DSRENLEL VTSLSSKFKK VLSPSDPSIK PTKEEVSENI 801 850 ENSP00000301962/1-1316 AVAPEEPPPS ------AGED IVGDTAPPDL CDPGSLTGDA SPLSQDAKGM ENSTTRP00000005000/1-1320 LAKPEEALPS ------TNKD TLGGDQLPKL CDPGNLTNDQ SKPSQDVKGT ENSBTAP00000000967/1-1333 SAEPEEAVPS ASTFCNPDKD ALGDDQLLAP CDPGNLTDDQ SKPSPDVGGT bmy_20986T0/1-1153 LAKPEEALPG INTFCNTNKD TLGDDQLPKP CDPGNLTHDQ SKPSQDVKGT BACU012126/1-1279 LAKPEEALPS INTFCNTNKD TLGDDQLPKP CDPGNLTNDQ SKPSQDVKGM 851 900 ENSP00000301962/1-1316 IAEGPRDSAL AEAPEGLSPA PPARSEEPCE QPLLVHPSGD HARDAQDPSQ ENSTTRP00000005000/1-1320 SPERPQDPAA AEAAGRLSPS -LVRSEGDCE PEPLGHSSRD RGTDVEGPPK ENSBTAP00000000967/1-1333 LPERPQDPVA AEAAGRLSPG PSVPSEGDHE PEPLGHSGRD RGSDAEGPSK bmy_20986T0/1-1153 LPERPQDPAA AEAAGRLSPS PLSRTEGDCE PEPLGHSSRD RGTDVEGPPQ BACU012126/1-1279 LPERPQDPAA AEAAGRLSPS PLSRTEGDCE PEPLGHSSRD RGTDVEGPPQ 901 950 ENSP00000301962/1-1316 SLGAPEAAER PPAPVLDMAP AGHPEGDAEP SPGERVEDA- AAPKAPGPSP ENSTTRP00000005000/1-1320 STGV--SADG VPSPQLDRIA ENRPEGVPEQ SNGERGEDSK AGQKVQEACA ENSBTAP00000000967/1-1333 SMGV--STDE APSAQLDTIT ENRPEGPPER SSSERGEDSK AGQKAPEPCL bmy_20986T0/1-1153 STGV--SADG VPSPQLDRIA ENRPEGVPEQ SNGERGEDGK AGQKVQEACP BACU012126/1-1279 STGV--SADG VPSPQLDRIA ENRPEGVPEQ SNGERGEDGK AGQKVQEACP 951 1000 ENSP00000301962/1-1316 AKEKIGSLRK VDRGHYRSRR ERSSSGEPAR ESRSKTEGHR HRRRRTCPRE ENSTTRP00000005000/1-1320 VQEKTSSLRK VDRGHYRSRK DRSSSGEHAR DSRSGTEEQP RRRRPHHEWK ENSBTAP00000000967/1-1333 VQEKVSSLRK VDRGHYRSRR DRSSSGEHAR ESRSRTEVQH RRKRPHREHE bmy_20986T0/1-1153 VQEKISSLRK VDRGHYRSRR DRSSSGERAR ASRGRTEEQH RRKRPRHGRE BACU012126/1-1279 VQEKISSLRK VDRGHYRSRR DRS------- ---------- ---------- 1001 1050 ENSP00000301962/1-1316 RDRQDRHAPE HHPGHGDRLS PGERRSLGRC SHHHSRHRSG VELDWVRHHY ENSTTRP00000005000/1-1320 RCRSER---R ALRRGPHAPC PG---SLARS GHPRSRSMGA PDQEWGRYHH ENSBTAP00000000967/1-1333 RPRPERPRPE PCALAPQPPC PS---SLARS GHHHSRSRGA PDQEWGRYHH bmy_20986T0/1-1153 RPRSER--PE PCAAAPHAPC PG---SLARS GHRRSRSRGA PDQEWGRYHH BACU012126/1-1279 ---------- ---------- ---------- GHRRSRSRGI PDQEWGRYHH 1051 1100 ENSP00000301962/1-1316 TEGERGWGRE KFYPDRPRWD RCRYYHDRYA LYAAR---DW KPFHGGREHE ENSTTRP00000005000/1-1320 AEAEHAWARE N-YPDGMRWG RFRYHHDRYA SYPAREPWEW RPLHGEREYD ENSBTAP00000000967/1-1333 AEGDHAWTRE KYYPDRLRWE RCRYHHDRSP LYPSREPRDW RPFHAEREYE bmy_20986T0/1-1153 GEGEHAWARE KHYPDRMRWG RCRYPHDRCA PYPAREPRDW RPFHAEREYD BACU012126/1-1279 GEGEHAWARE KHYPDRMRWG RCRYHHDRCA SYPAREPRDW RPFHAEREYD 1101 1150 ENSP00000301962/1-1316 RAGLH-ERPH KDHNRGRRGC EP-ARERERH RPSSPRAGAP HALAPHP-DR ENSTTRP00000005000/1-1320 RAGPY--RPH KDHYRGRKGH EPAAKERDRH RISSPGAGPA HTPPPHPADK ENSBTAP00000000967/1-1333 RAGPYGGRPY KDHYRGRKGY ELVAKERDRH RFSSPRAGMA HAPPPHPAAK bmy_20986T0/1-1153 RAGPYGGRPY KDHYRGRKGY EPAAKERDRH RFSSPRAGLV HAPPPHPADK BACU012126/1-1279 RAGPYGSRPY KDHYRGRKGY EPAAKERDRH RFSSPRAGLA HAPPPHLADK 1151 1200 ENSP00000301962/1-1316 FSHDRTALVA GD-NCNLSDR FHEHENGKSR KRRHDSVENS DSHVEKKARR ENSTTRP00000005000/1-1320 YAHDKAALGA EDRGCDLAGQ FHEHKNIKSR KRRYSSVGDK DSHVEKKAWR ENSBTAP00000000967/1-1333 YTHDRLSFGA EDGSCDLAAR FHEHDNIKSR KRRYDSLEN- ESHVEKKAWR bmy_20986T0/1-1153 YAHDKAALGA EDSSCDLAGR FHEHKDVKSR KRRYGSVGND DSHVEKKAWR BACU012126/1-1279 HAHEKAALGA EDSSCDLAGR FHEHKDIKSR KRRYGSVEND DSHVEKKAWR 1201 1250 ENSP00000301962/1-1316 SEQKDPLEEP KAKKHKKSKK KKKSKDKHRD RD-SRHQQDS DLSAACSDAD ENSTTRP00000005000/1-1320 SLQKDPLEEP KVKKHKKS-K KKKSKDKHRE RNSSRRQQYS DLLVTHSDAD ENSBTAP00000000967/1-1333 SLQKDPVEEP KVKKHKKSKK KKKSKDKHRD RD-SRHQQDS DLSVAHSDAD bmy_20986T0/1-1153 SLQKDPLEEP KVKKHKKSKK KKKSKDKHRD RD-SRHQQDS DLSVVHSDAD BACU012126/1-1279 SLQKDPLEEP KVKKHKKSKK KKKSKDKHRD RD-SRHQQDS DLSVAHSDAD 1251 1300 ENSP00000301962/1-1316 LH-RHKKKKK KKKRHSR-KS EDFVKDSELH LPRVTSLETV AQFRRAQGGF ENSTTRP00000005000/1-1320 LHNRHKKKKK KKKKKKHSKS ENSLRDSEPL LPEATSCETV DHFQGADSAF ENSBTAP00000000967/1-1333 LH-RHKKKKK KKKRHSR-KS EDFGRDSEPR LPKAASCETV DHFRKAEGAF bmy_20986T0/1-1153 LH-RHKKKKK KKKRHSR-KS EDLVRDSEPH LPKAASCETV DHFRRADSAF BACU012126/1-1279 LH-RHKKKKK KKKRHSR-KS EDLVRDSEPH LPKAASCETV DHFRRADSAF 1301 1350 ENSP00000301962/1-1316 PLSGGPPLEG VGPFREKTKH LRMESRDDRC RLFEYGQGD- ------- ENSTTRP00000005000/1-1320 PLMASQPLDG VGPCPEKTKH FWMETRDDRC HLSKCGQGKR TYLELRI ENSBTAP00000000967/1-1333 PLADGLPLEG AAPFCEKTKH FRMESREVRC RLSQCDQGKG ARWESGS bmy_20986T0/1-1153 PLTDGQPLEG VGPFREKTKH FWMETRDDRC HLSDCGQGKR TYLELRI BACU012126/1-1279 PLTDSQPLEG VGPFREKTKH FWMETRDDRC HPSDCGQGKR TYLELRI