KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:12:55 2014 Check: 00 .. Name: ENSTTRP00000001879/1-777 Len: 836 Check: 7594 Weight: 1.00 Name: ENSP00000249883/1-780 Len: 836 Check: 6813 Weight: 1.00 Name: ENSBTAP00000000988/1-820 Len: 836 Check: 779 Weight: 1.00 Name: bmy_04736T0/1-811 Len: 836 Check: 2952 Weight: 1.00 Name: BACU003182/1-739 Len: 836 Check: 3134 Weight: 1.00 // 1 50 ENSTTRP00000001879/1-777 ---------- ---------- ---------- ---------- ---------- ENSP00000249883/1-780 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000000988/1-820 AGAGTPCPLR KGVPLTTFFG KSWTHRLAAG DSAGCSGARC HWPLSRWVCA bmy_04736T0/1-811 MELEERGRQG RG-------- ---------- -RRRCSGARC XWPLSRRLCA BACU003182/1-739 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000001879/1-777 ----MRTLED SSGTVLHRLI QEQLRYGNLT ETRTLLAIQQ QALRGGAGAG ENSP00000249883/1-780 ----MRTLED SSGTVLHRLI QEQLRYGNLT ETRTLLAIQQ QALRGGAGTG ENSBTAP00000000988/1-820 SPGSMRTLED SSGTVLHRLI QEQLRYGNLT ETRTLLAIQQ QALRGGAGAG bmy_04736T0/1-811 SPGSMRTLED SSGTVLHRLI QEQLRYGNLT ETRTLLAIQQ QALRGGAGAG BACU003182/1-739 ----MRTLED SSGTVLHRLI QEQLRYGNLT ETRTLLAIQQ QALRGGAGAG 101 150 ENSTTRP00000001879/1-777 GTGSPQAPLE IVAPEDSQVL QQATRQEPQG QEHQGTETHL AENSLYRLCP ENSP00000249883/1-780 GTGSPQASLE ILAPEDSQVL QQATRQEPQG QEHQGGENHL AENTLYRLCP ENSBTAP00000000988/1-820 GTGSPQAPME IMAPEDSQVL QQATRQEPQG QEHQGTETHL AENGLYRLCP bmy_04736T0/1-811 GTGSPQAPLE IVAPEDSQVL QQATRQEPQG QEHQGTETHL AENSLYRLCP BACU003182/1-739 GTGSPQAPLE IVAPEDSQVL QQATRQEPQG QEHQGTETHL AENSLYRLCP 151 200 ENSTTRP00000001879/1-777 QPGKGEELPT YEEAKAHSQY YAAQQAGPQP HMGDRDPRGA PGGIRRQDEA ENSP00000249883/1-780 QPSKGEELPT YEEAKAHSQY YAAQQAGTRP HAGDRDPRGA PGGSRRQDEA ENSBTAP00000000988/1-820 QPGKGEELPT YEEAKAHSQY YASQQAGPWP HVGDRDPRGP PGGSRRQDEA bmy_04736T0/1-811 QPGKGEELPT YEEAKAHSQY YAAQQAGPRP HMGDRDPRGA PGGSRRQDEA BACU003182/1-739 QPGKGEELPT YEEAKAHSQY YAAQQAGPRP HMGDRDPRGA PGGSRRQDEA 201 250 ENSTTRP00000001879/1-777 LRELRHGHVR SLSERLLQLS LERNGARTPS HMSASHSFPQ LARNQQGPLP ENSP00000249883/1-780 LRELRHGHVR SLSERLLQLS LERNGARAPS HMSSSHSFPQ LARNQQGPPL ENSBTAP00000000988/1-820 LRELRHGHVR SLSERLLQLS LERNGARTPS HMSASHSFPQ LARNQQGPPA bmy_04736T0/1-811 LRELRHGHVR SLSERLLQLS LERNGARTPS HMSASHSFPQ LARNQQGPPP BACU003182/1-739 LRELRHGHVR SLSERLLQLS LERNGARTPS HMSASHSFPQ LARNQQGPPP 251 300 ENSTTRP00000001879/1-777 RGAP-AEGPE PRGPPPQYPH IVLAHETTSA VTDPRYRTRG SPHFQHAEVR ENSP00000249883/1-780 RGPP-AEGPE SRGPPPQYPH VVLAHETTTA VTDPRYRARG SPHFQHAEVR ENSBTAP00000000988/1-820 RGAPTAEGPE PRGPPPQYPH VMLAHETTSA VTDPRYRARG SPHFQHAEVR bmy_04736T0/1-811 RGAP-AEGPE PRGPPPQYPH IVLAHETTSA VTDPRYRTRG SPHFQHAEVR BACU003182/1-739 RGAP-AEGPE PRGPPPQYPH IVLAHETTSS VTDPRYRTRG SPHFQHAEV- 301 350 ENSTTRP00000001879/1-777 ILQAQVPPVF L-QQRQQYQY LQQPQEHPPP PSPAPLSQGP LGSLSLPGLE ENSP00000249883/1-780 ILQAQVPPVF L-QQQQQYQY LQQSQEHPPP PHPAALGHGP LSSLSPPAVE ENSBTAP00000000988/1-820 ILQAQVPPVF LPQQQQQYQY LQQPQERHPP PH-------- LAALSPPGVE bmy_04736T0/1-811 ILQAQVPPVF L-QQRQQYQY LQQPQEHPPP PSPAPLSQGP LGPLSLPGVE BACU003182/1-739 ---------- ---------- ---------- ------SQGP LGPLSLPGVE 351 400 ENSTTRP00000001879/1-777 APASTQAS-- -SGSAHPAQM ETVLRENARL QRDNERLKRE LESSAEKTGR ENSP00000249883/1-780 GPVSAQASSA TSGSAHLAQM EAVLRENARL QRDNERLQRE LESSAEKAGR ENSBTAP00000000988/1-820 GPASTQASLA TSGSTHLAQM ETVLRENARL QRDNERLQRE LESTAEKAGR bmy_04736T0/1-811 TPASTQAS-- -SGSAHLAQM ETVLRENARL QRDNERLKRE LESSAEKAGR BACU003182/1-739 APASTQAS-- -SGSAHLAQM ETVLRENARL QRDNERLKRE LESSAEKAGR 401 450 ENSTTRP00000001879/1-777 IEKLESEIQR LSEAHESLTR ASSKREALEK TMRNKMDSEM RRLQDFNRDL ENSP00000249883/1-780 IEKLESEIQR LSEAHESLTR ASSKREALEK TMRNKMDSEM RRLQDFNRDL ENSBTAP00000000988/1-820 IEKLESEIQR LSEAHESLTR ASSKREALEK TMRNKMDSEM RRLQDFNRDL bmy_04736T0/1-811 IEKLESEIQR LSEAHESLTR ASSKREALEK TMRNKMDSEM RRLQDFNRDL BACU003182/1-739 IEKLESEIQR LSEAHESLTR ASSKREALEK TMRNKMDSEM RRLQDFNRDL 451 500 ENSTTRP00000001879/1-777 RERLESANRR LASKTQEAQA GSQDMVAKLL AQSYEQQQEQ EKLEREVALL ENSP00000249883/1-780 RERLESANRR LASKTQEAQA GSQDMVAKLL AQSYEQQQEQ EKLEREMALL ENSBTAP00000000988/1-820 RERLESANRR LASKTQEAQA GSQDMVAKLL AQSYEQQQEQ EKLEREMALL bmy_04736T0/1-811 RERLESANRR LASKTQEAQA GSQDMVAKLL AQSYEQQQEQ EKLEREAALL BACU003182/1-739 RERLESANRR LASKTQEAQA GSQDMVAKLL AQSYEQQQEQ EKLEREMALL 501 550 ENSTTRP00000001879/1-777 RGAIEDQRRR AELLEQALSN AQGRAARAEE ELRKKQAYVE KVERLQQALG ENSP00000249883/1-780 RGAIEDQRRR AELLEQALGN AQGRAARAEE ELRKKQAYVE KVERLQQALG ENSBTAP00000000988/1-820 RGAIEDQRRR AELLEQALSN AQGRAARAEE ELRKKQAYVE KVERLQQALG bmy_04736T0/1-811 RGAIEDQRRR AELLEQALSN AQGRAARAEE ELRKKQAYVE KVERLQQALG BACU003182/1-739 RGAIEDQRRR AELLEQALSN AQGRAARAEE ELRKKQAYVE KVERLQQALG 551 600 ENSTTRP00000001879/1-777 QLQAACEKRE QLELRLRTRL EQELKALRAQ QRQAGSPGGG SSGGGSPELS ENSP00000249883/1-780 QLQAACEKRE QLELRLRTRL EQELKALRAQ QRQAGAPGGS SGSGGSPELS ENSBTAP00000000988/1-820 QLQAACEKRE QLELRLRTRL EQELKALRAQ QRQAGTPGGG GGSGGTPELS bmy_04736T0/1-811 QLQAACEKRE QLELRLRTRL EQELKALRAQ QRQAGTPGGG SSSSGSPELS BACU003182/1-739 QLQAACEKRE QLELRLRTRL EQELKALRAQ QRQAGTPGGG SSSDGSPELS 601 650 ENSTTRP00000001879/1-777 ALRLSEQLRE KEEQVLALEA DMTKWEQKYL EERAMRQFAM DAAATAAAQR ENSP00000249883/1-780 ALRLSEQLRE KEEQILALEA DMTKWEQKYL EERAMRQFAM DAAATAAAQR ENSBTAP00000000988/1-820 ALRLSEQLRE KEEQVLALEA DMTKWEQKYL EERAMRQFAM DAAATAAAQR bmy_04736T0/1-811 ALRLSEQLRE KEEQVLALEA DMTKWEQKYL EERAMRQFAM DAAATAAAQR BACU003182/1-739 ALRLSEQLRE KEEQVLALEA DMTKWEQKYL EERAMRQFAM DAAATAAAQR 651 700 ENSTTRP00000001879/1-777 DTTLIRHSPQ PSPSSSFNEG LLTGGHRHQE MESXXXXXXX XXXXXXXXXX ENSP00000249883/1-780 DTTLIRHSPQ PSPSSSFNEG LLTGGHRHQE MESRLKVLHA QILEKDAVIK ENSBTAP00000000988/1-820 DTTLIRHSPQ PSPSSSFNEG LLTGGHRHQE MESRLKVLHA QILEKDAVIK bmy_04736T0/1-811 DTTLIRHSPQ PSPSSSFNEG LLTGGHRHQE MESRLKVLHA QILEKDAVIK BACU003182/1-739 DTTLIRHSPQ PSPSSSFNEG LLTGGHRHQE MESRLKVLHA QILEKDAVIK 701 750 ENSTTRP00000001879/1-777 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000249883/1-780 VLQQRSRRDP GKAIQGSLRP AKSVPSVFAA AAAGTQGWQG LSSSERQTAD ENSBTAP00000000988/1-820 VLQQRSRKDP GKVTPGSLRP AKSVPSIFVA AAAGTQGWQG HSSSERQ-VD bmy_04736T0/1-811 VLQQRSRKDP GKATQGSLRP AKSVPSIFVA AAAGAQGWQG LSSSERQ-VD BACU003182/1-739 VLQQRSRKDP GKAAQGSLRP AKSVPSIFVA AAAGAQGWHG LSSGERQ-VD 751 800 ENSTTRP00000001879/1-777 XXXXXXXXDR APAEEPVAEA PLAAHAKHGS RDGSTQTDSP PDSAAACLGL ENSP00000249883/1-780 APARLTTADR APTEEPVVTA PPAAHAKHGS RDGSTQTEGP PDSTSTCLPP ENSBTAP00000000988/1-820 ASAQLA-ADR APLEEPVAVA PLAAHAKHGS RDGSTQTDGP PDS------L bmy_04736T0/1-811 APARLTPADR APAEEPVAEA PLAAHAKHGS RDGSTQTDGP PDSAAACLGL BACU003182/1-739 APARLA-ADR APAEEPVAEA PLAAHAKHGS RDGSTQTDAP PDSAATCLGL 801 850 ENSTTRP00000001879/1-777 EPDGLLGCSS GQRTALLDSV ATSRVQDLSD MVEILI ENSP00000249883/1-780 EPDSLLGCSS SQRAASLDSV ATSRVQDLSD MVEILI ENSBTAP00000000988/1-820 EPDSLLGCSS GQRTASLDSI ATSRVQDFSD MVEILI bmy_04736T0/1-811 EPDGLLGCSS GQRTALLDSV ATSRVQDLSD MVEILI BACU003182/1-739 EPDGLLGCSS GQRTALLGSV ATSRVEDLSD MVEILI