KEY:
    ENSP* - Homo sapiens (Human)
    ENSBTA* - Bos taurus (Cow)
    ENSTTR* - Tursiops truncatus (Dolphin)
    bmy_* - Balaena mysticetus (Bowhead whale)
    BACU* - Balaenoptera acutorostrata (Minke whale)

Copy from below the line for a valid .msf file.

----------------------------------------------------------------------------------
                
NoName   MSF: 4  Type: P  Thu May 15 16:12:56 2014  Check: 00 ..

 Name: ENSTTRP00000015467/1-242  Len:    250  Check:  9764  Weight:  1.00
 Name: bmy_07171T0/1-170         Len:    250  Check:  995  Weight:  1.00
 Name: ENSP00000226796/1-217     Len:    250  Check:  7422  Weight:  1.00
 Name: ENSBTAP00000000992/1-210  Len:    250  Check:  2613  Weight:  1.00

//


                          1                                                   50
ENSTTRP00000015467/1-242  PKRLLCGGST GRESVSGPEV HVAPVGASMS FRGGGRGGFS R---GGGFGR 
bmy_07171T0/1-170         ---------- ---------- --------MS FRGRGRGGFN R---GGGFGR 
ENSP00000226796/1-217     ---------- ---------- --------MS FRGGGRGGFN RGGGGGGFNR 
ENSBTAP00000000992/1-210  ---------- ---------- --------MS FRGGGRGGFN R---GGGFGR 


                          51                                                 100
ENSTTRP00000015467/1-242  -GGSSNHHFR G----GGGGN FRGGGGGRGG FGRGGGRGAF NRGQDHGPPE 
bmy_07171T0/1-170         GGGSSNHHFR G----GGGGN FR-GG-GRGG FGRGGGRGGF NKGQDQGPPE 
ENSP00000226796/1-217     -GGSSN-HFR GGGGGGGGGN FR-GG-GRGG FGRGGGRGGF NKGQDQGPPE 
ENSBTAP00000000992/1-210  -GGSSNNHFR G----GGGGN FR-GGGGRGG FGRGGGRGGF NKGQDQGPPE 


                          101                                                150
ENSTTRP00000015467/1-242  QVVLLGEFLH LCEDDIVCKC TTDENKVPYF NAPVYLENKE QIGKVDEIFG 
bmy_07171T0/1-170         QVVLLGEFLH PCEDDIVCKC TTDENKVPYF NAPVYLENKE QIGKVDEIFG 
ENSP00000226796/1-217     RVVLLGEFLH PCEDDIVCKC TTDENKVPYF NAPVYLENKE QIGKVDEIFG 
ENSBTAP00000000992/1-210  QVVLLGEFLH PCEDDIVCKC TTDENKVPYF NAPVYLENKE QIGKVDEIFG 


                          151                                                200
ENSTTRP00000015467/1-242  QLRDFYFSVK LSENMKASSF KKLQKXXXXX XXXXXXXXXX XXXXXXXXXX 
bmy_07171T0/1-170         QLRDFYFSVK LSENMKASSF KKLQKVVLEV EEEVEVE--- -VSEEEEGVV 
ENSP00000226796/1-217     QLRDFYFSVK LSENMKASSF KKLQKFYIDP YKLLPLQRFL PRPPGEKGPP 
ENSBTAP00000000992/1-210  QLRDFYFSVK LSENMKASSF KKLQKFYIDP YKLLPLQRFL PRPPGEKGPP 


                          201                                                250
ENSTTRP00000015467/1-242  XXXXXXXXXX XXXXXXXXXX XXXGFRGGRG SGGGGFRGGR GGGGFRGRGR 
bmy_07171T0/1-170         VLEEEDIKCN S--------- ---------- ---------- ---------- 
ENSP00000226796/1-217     RGGGRGGRGG GRGGGGRGGG RGGGFRGGRG GGGGGFRGGR -GGGFRGRGH 
ENSBTAP00000000992/1-210  RGGGRGGQGG GRGRGGR-GG RGGGFRGGR- -GGGGFRGGR GGGGFRGRGH