KEY:
    ENSP* - Homo sapiens (Human)
    ENSBTA* - Bos taurus (Cow)
    ENSTTR* - Tursiops truncatus (Dolphin)
    bmy_* - Balaena mysticetus (Bowhead whale)
    BACU* - Balaenoptera acutorostrata (Minke whale)

Copy from below the line for a valid .msf file.

----------------------------------------------------------------------------------
                
NoName   MSF: 5  Type: P  Thu May 15 16:12:58 2014  Check: 00 ..

 Name: BACU011098/1-73           Len:    172  Check:  7528  Weight:  1.00
 Name: ENSP00000355955/1-172     Len:    172  Check:  4231  Weight:  1.00
 Name: ENSTTRP00000014442/1-171  Len:    172  Check:  2863  Weight:  1.00
 Name: ENSBTAP00000001007/1-169  Len:    172  Check:  3874  Weight:  1.00
 Name: bmy_07399T0/1-107         Len:    172  Check:  3249  Weight:  1.00

//


                          1                                                   50
BACU011098/1-73           ---------- ---------- ---------- ---------- ---------- 
ENSP00000355955/1-172     MVGPAPRRRL RPLAALALVL ALAPGLPTAR AGQTPRPAER GPPVRLFTEE 
ENSTTRP00000014442/1-171  MTGPAPERRM R-LAALALVL AMAAGLLAAG ARQTPRPAER GPPMRLFTEK 
ENSBTAP00000001007/1-169  MAGPAPGRR- --LVALALIV ALAVGLPTAG AGQAPRPAER GPPVRLFTEE 
bmy_07399T0/1-107         ---------- ---------- ---------- ---------- ---------- 


                          51                                                 100
BACU011098/1-73           ---------- ---------- ---MLHMGR- ---------- ---------A 
ENSP00000355955/1-172     ELARYGGEEE DQPIYLAVKG VVFDVTSGKE FYGRGAPYNA LTGKDSTRGV 
ENSTTRP00000014442/1-171  EIARYGGEEE DQPIYMAVKG VVFDVTSGKE FYGRGAPYNA LTGKDSTRGV 
ENSBTAP00000001007/1-169  ELARYGGEEE DQPIYMAVKG VVFDVTSGKE FYGRGAPYNA LTGKDSTRGV 
bmy_07399T0/1-107         ---------- -----MAVKG VVFDVTSGKE FYGRGAPYNA LTGKDSTRGV 


                          101                                                150
BACU011098/1-73           VELILD---- --QETGLTAE ELESLDDVFT KVYKAKYPIV GYTARRILNE 
ENSP00000355955/1-172     AKMSLDPADL THDTTGLTAK ELEALDEVFT KVYKAKYPIV GYTARRILNE 
ENSTTRP00000014442/1-171  AKMSLDPADL THDTTGLTSE ELESLDDVFT KVYKAKYPIV GYTARRILNE 
ENSBTAP00000001007/1-169  AKMSLDPADL THDTTGLTAE ELESLDDVFT RVYKAKYPIV GYTARRILNE 
bmy_07399T0/1-107         AKMSLDPADL THDTTGLTAE ELESLDDIFT KVYKAKYPIV GYTARRILNE 


                          151                                                200
BACU011098/1-73           DGSPNLDFKP EDQPHFDIKD EF 
ENSP00000355955/1-172     DGSPNLDFKP EDQPHFDIKD EF 
ENSTTRP00000014442/1-171  DGSPNLDFKP EDQPHFDIKD EF 
ENSBTAP00000001007/1-169  DGSPNLDFKP EDQPHFDIKD EF 
bmy_07399T0/1-107         DGSPNLDFKP EDQPHFDIKD EF