KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:12:59 2014 Check: 00 .. Name: ENSP00000366331/1-378 Len: 428 Check: 5045 Weight: 1.00 Name: ENSBTAP00000001031/1-316 Len: 428 Check: 9687 Weight: 1.00 Name: bmy_20599T0/1-378 Len: 428 Check: 1919 Weight: 1.00 Name: BACU003582/1-259 Len: 428 Check: 4833 Weight: 1.00 // 1 50 ENSP00000366331/1-378 ---------M VWGKICWFSQ RAG------- --WTVFAESQ ISLSCSLCLH ENSBTAP00000001031/1-316 ---------- --------PD R--------- ---------- ---------- bmy_20599T0/1-378 MSLKRPHQFL ITGKVSHATE R--------- ----APEGGL VVQGQRGCLH BACU003582/1-259 --MARLRAVV CLGGAPGSPA RAAGGLRGGG LAVGAPEGGS VVQGQKGCLH 51 100 ENSP00000366331/1-378 ---------- ---------- ----SGDQEA QNPNLVSQLC GVFLQNETNE ENSBTAP00000001031/1-316 ---------- ---------- ---------- ---------- --LTMDNYCE bmy_20599T0/1-378 DQTSREGPSY PRRPLPGLDQ HQRSAGSHGS EEPSGVLLSS DLLSVAQDRK BACU003582/1-259 DQTSREGPSY PRRPLPGLDQ HQRSAGNHGS EEPSRVLLSL DLLTMAQYRK 101 150 ENSP00000366331/1-378 TIHMQ----M SMAVGQQALP LNIIAPKAVL VSLCGVLLNG TVFWLLC-CG ENSBTAP00000001031/1-316 T-HHSSPDAA ERAEGSHDVE HVALRSLAVV VALFGLVGNG IVIWFVHLSH bmy_20599T0/1-378 TRNRSSTDAT GLAPRSENTD HMIFRSITVA VALCGLVGNG IVISFVHLSA BACU003582/1-259 TCNRSSIDAT ALAPRSEDTD HMIFRSITVV VALCGLVGNG IVI------- 151 200 ENSP00000366331/1-378 ATNPYMVYIL HLVAADVIYL CCSAVGFLQV TLLTYHGVVF FIPDFLAILS ENSBTAP00000001031/1-316 KKTSFIIYSL NLAIADFMNL GFQILFSVRH ILKPFLNHCF GLHALFMVLR bmy_20599T0/1-378 KKNAFFIYSL HLAVEDFMNL CFQTVFSVCQ ILKLFLHYSF HLHDTFMVLR BACU003582/1-259 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000366331/1-378 PFSFEVCLCL LVAISTERCV CVLFPIWYRC HRPKYTSNVV CTLIWGLPFC ENSBTAP00000001031/1-316 WFFYLTGLGI MTAISFQRCL SALFPIWYRC HCPKHLLAIV STLLWILTFL bmy_20599T0/1-378 FFFYFSGLGI MTAISFQCCL SSFFPIWYQC RCPKHLSGNV RALLWILIF- BACU003582/1-259 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000366331/1-378 INIVKSLF-- LTYWKHVKAC VIFLKLSGLF HAILSLVMCV SSLTLLIRFL ENSBTAP00000001031/1-316 LNVLRGHACG QLFTKEEKFC DEFKTATAVS VFLQFSVLGI SSLLLLRRVQ bmy_20599T0/1-378 ---------- -------SFG PALTTATTVW VLLPFSILGL SSLLFLLRVQ BACU003582/1-259 ---------- ---------- ---------- ---------- -CLLLLLRAQ 301 350 ENSP00000366331/1-378 CCSQQQKATR VYAVVQISAP MFLLWALPLS VAP-LITDFK MFVTTSYLIS ENSBTAP00000001031/1-316 ASSQKHQPRK FYLVLLLSFL GF-LFGLPLS IIR-FCTTEK IHIFNDICVL bmy_20599T0/1-378 ASSQQHWPRK LYLVLLLSVL GFFLFGLPLC IVSCLVADTK HHTLSDVCIH BACU003582/1-259 ASSQQHWPRK LYLVLLLSVL GFVLFGLPLC IVSCLVADMK HHTLSDVCIH 351 400 ENSP00000366331/1-378 LFLIINSSAN PIIYFFVGSL RKKRLKESLR VILQRALADK PEVGRNKKAA ENSBTAP00000001031/1-316 LS-CVNSTAN PAIYFFIGGL QRERSMEALK VVLQRALGEE MEDAEDQKVT bmy_20599T0/1-378 LS-CTNSTAN PAIDFFIGGL QTQRLREPLK VVLQRALGEE TEDGEDGKVP BACU003582/1-259 LS-CTNSTAN LAIDFFTGGL QTQRLREPLK VVLQRALGEE TEDGEDGKAP 401 450 ENSP00000366331/1-378 GIDPMEQPHS TQHVENLLPR EHRVDVET ENSBTAP00000001031/1-316 ---------- ------PTGK TESVS--- bmy_20599T0/1-378 ---------- ------LTGK VETVDL-- BACU003582/1-259 ---------- ------LTGK VERVDL--