KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:13:01 2014 Check: 00 .. Name: ENSP00000263923/1-1356 Len: 1477 Check: 3696 Weight: 1.00 Name: ENSBTAP00000001038/1-1356 Len: 1477 Check: 1771 Weight: 1.00 Name: BACU002238/1-1384 Len: 1477 Check: 3451 Weight: 1.00 Name: bmy_09831T0/1-1407 Len: 1477 Check: 1307 Weight: 1.00 Name: ENSTTRP00000002294/1-1307 Len: 1477 Check: 5479 Weight: 1.00 // 1 50 ENSP00000263923/1-1356 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000001038/1-1356 ---------- ---------- ---------- ---------- ---------- BACU002238/1-1384 ---------- ---------- ---------- ---------- ---------- bmy_09831T0/1-1407 MVAFRLPARG TTCALQKARS CLATGIPSPT GTRRRPCSRG RSRGTLALRE ENSTTRP00000002294/1-1307 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000263923/1-1356 ---------- ---------- ---------- --------MQ SKVLLAVALW ENSBTAP00000001038/1-1356 ---------- ---------- ---------- --------ME SKALLALALW BACU002238/1-1384 ---------- ---------- ---------- --------ME SKALLAFALW bmy_09831T0/1-1407 PKACAAARIP PPRLVRGAGP GRENRRRVLG TAPGARCGME SKALLAFALW ENSTTRP00000002294/1-1307 ---------- ---------- ---------- --------ME SKALLAFALW 101 150 ENSP00000263923/1-1356 LCVETRAASV GLPSVSLDLP RLSIQKDILT -----IKANT TLQITC---- ENSBTAP00000001038/1-1356 LCVETRAASV GFSSVSLDPP RLSIQKDILR -----VMANT TLQITC---- BACU002238/1-1384 LCVETRAASV DFHSSEGEKG ERVEKEEKLA ENSVFLLWSD PWQGICPMVY bmy_09831T0/1-1407 LCVETRAASV GLSSVSLDPP RLSIKKDILT -----IMANT TLQITC---- ENSTTRP00000002294/1-1307 LCVETRAASV GLSSVSLDPP RLSIKKDILT -----IMANT TLQITC---- 151 200 ENSP00000263923/1-1356 ---------- ---------- RGQRDLDWLW PNNQSGSEQR VEVTECSDGL ENSBTAP00000001038/1-1356 ---------- ---------- RGQRDLQWLW PNNQSSSEKR VEVTDCSDGV BACU002238/1-1384 LGGHFSCVPS LVSGQAQRFD QGQRDLDWLW PNNQSGSEKR VEVTDCSDSV bmy_09831T0/1-1407 ---------- ---------- RGQRDLDWLW PNNQSGSEKR VEVTDCSDSV ENSTTRP00000002294/1-1307 ---------- ---------- RGQRDLDWLW PNNQSGSEKR VEVTDCSDSA 201 250 ENSP00000263923/1-1356 FCKTLTIPKV IGNDTGAYKC FYRETDLASV IYVYVQDYRS PFIASVSDQH ENSBTAP00000001038/1-1356 FCKMLTISEV IGNDTGAYKC FYQDTDMGSV LYVYVQDYRS PFIASVSDQH BACU002238/1-1384 FCKMLTIPKV IGNDTGAYKC FYRDTDMASV IYVYVQDYRS PFIASVSDQH bmy_09831T0/1-1407 FCKMLTIPKV IGNDTGAYKC FYRDTDMASV VYVYVQDYRS PFIASVSDQH ENSTTRP00000002294/1-1307 LCKMLTIPKV IGNDTGAYKC FYRDTDMASV VYVYVQDYRS PFIASVSDQH 251 300 ENSP00000263923/1-1356 GVVYITENKN KTVVIPCLGS ISNLNVSLCA RYPEKRFVPD GNRISWDSKK ENSBTAP00000001038/1-1356 EVVYITENKN KTVVIPCLGT VSDLNVSLCA RYPEKRFVPD GNRISWDSQK BACU002238/1-1384 GVVYITENKN KTVVIPCLGT ISNLNVSLCA RYPEKRFVPD GNRISWDSKK bmy_09831T0/1-1407 GVVYITENKN KTVVIPCLGT ISNLNVSLCA RYPEKRFVPD GNRISWDSKK ENSTTRP00000002294/1-1307 GVVYITENKN KTVVIPCLGT ISNLNVSLCA RYPEKRFVPD GNRISWDSKK 301 350 ENSP00000263923/1-1356 GFTIPSYMIS YAGMVFCEAK INDESYQSIM YIVVVVGYRI YDVVLSPSHG ENSBTAP00000001038/1-1356 GFSIPSYMIS YAGVVFCEAK INDESYQSIM YIIVVIGYKI YDVVLSPPHG BACU002238/1-1384 GFTIPSYMIS YAGMVFCEAK INDESYQSIM YIVVVVGYKI YDVVLSPPHG bmy_09831T0/1-1407 GFTIPSYMIS YAGMVFCEAK INDESYQSIM YIVVVVGYKI YDVVLSPPHG ENSTTRP00000002294/1-1307 GFTIPSYMIS YAGMVFCEAK INDESYQSIM YIVVVVGYKI YDVVLSPPHG 351 400 ENSP00000263923/1-1356 IELSVGEKLV LNCTARTELN VGIDFNWEYP SSKHQHKKLV NRDLKTQSGS ENSBTAP00000001038/1-1356 VELSVGEKLI LNCTARTELN VGIDFHWEYP SLKHQHKKLI NRDLKTQSGT BACU002238/1-1384 VELSVGEKLV LNCTARTELN VGIDFNWEYP SLKHQHKKLV NRDLKTQSGS bmy_09831T0/1-1407 VELSVGEKLV LNCTARTELN VGIDFNWEYP SLKHQHKKLV NRDLKTQSGS ENSTTRP00000002294/1-1307 VELSVGEKLV LNCTARTELN VGIDFNWEYP SLKHQHKKLV NRDLKTQSGS 401 450 ENSP00000263923/1-1356 EMKKFLSTLT IDGVTRSDQG LYTCAASSGL MTKKNSTFVR VHEKPFVAFG ENSBTAP00000001038/1-1356 EMKKFLSTLT IDGVTRSDQG WYICAASSGL MTKKNSTFVR VHEKPFVAFG BACU002238/1-1384 EMKKFLSTLT IDGVTRSDQG WYTCAASSGL MTKRNSTFIR VHEKPFVAFG bmy_09831T0/1-1407 EMKKFLSTLT IDGVTRSDQG WYTCAASSGL MTKRNSTFIR VHEKPFVAFG ENSTTRP00000002294/1-1307 EMKKFLSTLT IDGVTRSDQG WYTCAASSGL MTKRNSTFIR VHEKPFVAFG 451 500 ENSP00000263923/1-1356 SGMESLVEAT VGERVRIPAK YLGYPPPEIK WYKNGIPLES NHTIKAGHVL ENSBTAP00000001038/1-1356 SGMESLVEAT VGERVRVPVK YLGYPPPEIK WYKNGRPIES NHTVKVGHVL BACU002238/1-1384 SGMESLVEAT VGDRVRVPVK CLGYPPPEIK WYKNGRPIES NHTIKVGHVL bmy_09831T0/1-1407 SGMESLVEAT VGDRVRVPVK CLGYPPPEIK WYKNGRPIES NHTIKVGHVL ENSTTRP00000002294/1-1307 SGMESLVEAT VGDRVRVPVK CLGYPPPEIK WYKNGRPIES NHTIKVGHVL 501 550 ENSP00000263923/1-1356 TIMEVSERDT GNYTVILTNP ISKEKQSHVV SLVVYVPPQI GEKSLISPVD ENSBTAP00000001038/1-1356 TIMEVSEKDT GNYTVILTNP ISKEKQSHMV SLVVNVPPQI GEKSLLSPVD BACU002238/1-1384 TIMEVSEKDT GNYTVILTNP ISKEKQSHVV SLVVNVPPQI GEKSLISPVD bmy_09831T0/1-1407 TIMEVSEKDT GNYTVILTNP ISKEKQSHVV SLVVNVPPQI GEKSLISPVD ENSTTRP00000002294/1-1307 TIMEVSEKDT GNYTVILTNP ISKEKQSHVV SLVVNVPPQI GEKSLISPVD 551 600 ENSP00000263923/1-1356 SYQYGTTQTL TCTVYAIPPP HHIHWYWQLE EECANEPSQA VSVTNPYPCE ENSBTAP00000001038/1-1356 SYQYGTSQTL TCTVYAVPPP SHIRWYWQLE TECTYQPTLT ALTTNPYTCK BACU002238/1-1384 SYQYGTSQTL TCTIYAVPPP SHVHWYWQLE TECTYQPTQA ALTTNPHTCK bmy_09831T0/1-1407 SYQYGTSQTL TCTIYAVPPP SHVH------ -------CQA ALTTNPHTCK ENSTTRP00000002294/1-1307 SYQYGTSQTL TCTVYAVPPP SHIQWYWQLE TECTYQPIQA ALTTNPHTCK 601 650 ENSP00000263923/1-1356 EWRSVEDFQG GNKIEVNKNQ FALIEGKNKT VSTLVIQAAN VSALYKCEAV ENSBTAP00000001038/1-1356 EWRNVEDFQG GNKIEVNKNQ IALIEGRNKT VSTLVIQAAN VSALYKCEAV BACU002238/1-1384 EWRNVEDFQG GNKIEVNKNQ FALIEGKNKT VSTLVIQAAN VSALYKCEAV bmy_09831T0/1-1407 EWRNVEDFQG GNKIEVNKNQ FALIEGKNKT VSTLVIQXAN VSALYKCEAV ENSTTRP00000002294/1-1307 EWRNVEDFQG GNNIEVNKNQ FALIEGKNKT VSTLVIQAAN VSALYKCEAV 651 700 ENSP00000263923/1-1356 NKVGRGERVI SFHVTRGPEI TLQPDMQPTE QESVSLWCTA DRSTFENLTW ENSBTAP00000001038/1-1356 NKAGRGERVI SFHVTRGPEI TLQPGIQPTE QENVSLWCSA DRTMFENLTW BACU002238/1-1384 NKAGRGERVI SFHVTRGPEI TLQPGTQPTE QESVSLWCSA DRTMFENLTW bmy_09831T0/1-1407 NKAGRGERVI SFHVTRGPEI TLQPGTQPTE QESVSLWCSA DRTMFENLTW ENSTTRP00000002294/1-1307 NKAGRGERVI SFHVTKGFEI TLQPGTQPTE QESVSLWCSA DRTMFENLTW 701 750 ENSP00000263923/1-1356 YKLGPQPLPI HVGELPTPVC KNLDTLWKLN ATMFSNSTND ILIMELKNAS ENSBTAP00000001038/1-1356 YKLGPQALPI HMGDLPTPVC KNLDALWKMN ATMNSNGTND ILILELQNAS BACU002238/1-1384 YKLGPQALPI HVGELPTPVC KNLDALWRMN ATMISNSTND ILIMELQNAS bmy_09831T0/1-1407 YKLGPQALPI HMGELPTPVC KNLDALWRMN ATMISNSTND ILIMELQNAS ENSTTRP00000002294/1-1307 YKLGPQALPI HVGELPTPVC KNLDALWRMN ATMISNSTND ILIMELQNAS 751 800 ENSP00000263923/1-1356 LQDQGDYVCL AQDRKTKKRH CVVRQLTVLE RVAPTITGNL ENQTTSIGES ENSBTAP00000001038/1-1356 LQDQGDYVCF AQDRKTKKRH CVARQLTVLE RMAPMITGNL ENQTTSIGET BACU002238/1-1384 LQDQGDYICF AQDRKTKKRH CVARQLTVLE RMAPTITGNL ENQTTSIGET bmy_09831T0/1-1407 LQDQGDYICF AQDRKTKKRH CVARQLTVLE RMAPTITGNL ENQTTSIGET ENSTTRP00000002294/1-1307 LQDQGDYICF AQDRKTKKRH CVARQLTVL- ---------- ---------- 801 850 ENSP00000263923/1-1356 IEVSCTASGN PPPQIMWFKD NETLVEDSGI VLKDGNRNLT IRRVRKEDEG ENSBTAP00000001038/1-1356 IEVSCTASGN PSPQITWFKD NETLVEDSGI VLKDGNRNLT IRRVRKEDEG BACU002238/1-1384 IEVSCTASGN PPPQITWFKD NETLVEDSGI VLKDGNRNLT IRRVRKEDEG bmy_09831T0/1-1407 IEVSCTASGN PPPQITWFKD NETLVEDSGI VLKDGNRNLT IRRVRKEDEG ENSTTRP00000002294/1-1307 ---------- ---------- --------GI VLKDGNRNLT IRRVRKEDEG 851 900 ENSP00000263923/1-1356 LYTCQACSVL GCAKVEAFFI IEGAQEKTNL EIIILVGTAV IAMFFWLLLV ENSBTAP00000001038/1-1356 LYTCQACSVL GCAKVEAFFI VEGAQEKTNL EVIILVGTAV IAMFFWLLLV BACU002238/1-1384 LYTCQACSVL GCAKVEAFFI VEGAQEKTNL EVIILVGTAV IAMFFWLLLV bmy_09831T0/1-1407 LYTCQACSVL GCAKVEAFFI VEGAQEKTNL EVIILVGTAV IAMFFWLLLV ENSTTRP00000002294/1-1307 LYTCQACSVL GCAKVEAFFI VEGAQEKTNL EVIILVGTAV IAMFFWLLLV 901 950 ENSP00000263923/1-1356 IILRTVKRAN GGELKTGYLS IVMDPDELPL DEHCERLPYD ASKWEFPRDR ENSBTAP00000001038/1-1356 IVLRTVKRAN GGELKTGYLS IVMDPDELPL DEHCERLPYD ASKWEFPRDR BACU002238/1-1384 IVLRTVKRAS GGELKTGYLS IVMDPDELPL DEHCERLPYD ASKWEFPRDR bmy_09831T0/1-1407 IVLRTVKRAS GGELKTGYLS IVMDPDELPL DEHCERLPYD ASKWEFPRDR ENSTTRP00000002294/1-1307 IVLRTVKRAS GGELKTGYLS IVMDPDELPL DEHCERLPYD ASKWEFPRDR 951 1000 ENSP00000263923/1-1356 LKLGKPLGRG AFGQVIEADA FGIDKTATCR TVAVKMLKEG ATHSEHRALM ENSBTAP00000001038/1-1356 LKLGKPLGRG AFGQVIEADA FGIDKTATCK TVAVKMLKEG ATHGEHRALM BACU002238/1-1384 LKLGKPLGRG AFGQVIEADA FGIDKTATCK TVAVKMLKEG ATHSEHRALM bmy_09831T0/1-1407 LKLGKPLGRG AFGQVIEADA FGIDKTATCK TVAVKMLKEG ATHSEHRALM ENSTTRP00000002294/1-1307 LKLGKPLGRG AFGQVIEADA FGIDKTATCK TVAVKMLKEG ATHSEHRALM 1001 1050 ENSP00000263923/1-1356 SELKILIHIG HHLNVVNLLG ACTKPGGPLM VIVEFCKFGN LSTYLRSKRN ENSBTAP00000001038/1-1356 SELKILIHIG HHLNVVNLLG ACTKPGGPLM VIVEFCKFGN LSTYLRSKRN BACU002238/1-1384 SELKILIHIG HHLNVVNLLG ACTKPGGPLM VIVEFCKFGN LSTYLRSKRN bmy_09831T0/1-1407 SELKILIHIG HHLNVVNLLG ACTKPGGPLM VIVEFCKFGN LSTYLRSKRN ENSTTRP00000002294/1-1307 SELKILIHIG HHLNVVNLLG ACTKPGGPLM VIVEFCKFGN LSTYLRSKRN 1051 1100 ENSP00000263923/1-1356 EFVPYKTKGA RFRQGKDYVG AIPVDLKRRL DSITSSQSSA SSGFVEEKSL ENSBTAP00000001038/1-1356 EFVPYKTKGA QFRQGKEYVG EITMDPKRRL DSITSSQSSA SSGFVEEKSL BACU002238/1-1384 EFVPYKTKGA RFRQGKEYVG EITVDPKRRL DSITSSQSSA SSGFVEEKSL bmy_09831T0/1-1407 EFVPYKTKGA RFRQGKEYVG EITMDPKRRL DSITSSQSSA SSGFVEEKSL ENSTTRP00000002294/1-1307 EFVPYKTKGA RFRQGKEYVG EITVDPKRRL DSITSSQSSA SSGFVEEKSL 1101 1150 ENSP00000263923/1-1356 SDVEEEEAPE DLYKDFLTLE HLICYSFQVA KGMEFLASRK CIHRDLAARN ENSBTAP00000001038/1-1356 SDVEEEEVSE DLYKNFLTLE HLICYSFQVA KGMEFLASRK CIHRDLAARN BACU002238/1-1384 SDVEEEEVSE DVYKNFLTLE HLICYSFQVA KGMEFLASRK CIHRDLAARN bmy_09831T0/1-1407 SDVEEEEVSE DVYKNFLTLE HLICYSFQVA KGMEFLASRK CIHRDLAARN ENSTTRP00000002294/1-1307 SDVEEEEVSE DVYKNFLTLE HLICYSFQVA KGMEFLASRK CIHRDLAARN 1151 1200 ENSP00000263923/1-1356 ILLSEKNVVK ICDFGLARDI YKDPDYVRKG DARLPLKWMA PETIFDRVYT ENSBTAP00000001038/1-1356 ILLSEKNVVK ICDFGLARDI YKDPDYVRKG DARLPLKWMA PETIFDRVYT BACU002238/1-1384 ILLSEKNVVK ICDFGLARDI YKDPDYVRKG DARLPLKWMA PETIFDRVYT bmy_09831T0/1-1407 ILLSEKNVVK ICDFGLARDI YKDPDYVRKG DARLPLKWMA PETIFDRVYT ENSTTRP00000002294/1-1307 ILLSEKNVVK ICDFGLARDI YKDPDYVRKG DARLPLKWMA PETIFDRVYT 1201 1250 ENSP00000263923/1-1356 IQSDVWSFGV LLWEIFSLGA SPYPGVKIDE EFCRRLKEGT RMRAPDYTTP ENSBTAP00000001038/1-1356 IQSDVWSFGV LLWEIFSLGA SPYPGVKIDE EFCRRLKEGT RMRAPDYTTP BACU002238/1-1384 IQSDVWSFGV LLWEIFSLGA SPYPGVKIDE EFCRRLKEGT RMRAPDYTTP bmy_09831T0/1-1407 IQSDVWSFGV LLWEIFSL-- ---------- VFCF------ ---------- ENSTTRP00000002294/1-1307 IQSDVWSFGV LLWEIFSLGA SPYPGVKIDE EFCRRLKEGT RMRAPDYTTP 1251 1300 ENSP00000263923/1-1356 EMYQTMLDCW HGEPSQRPTF SELVEHLGNL LQANAQQDGK DYIVLPISET ENSBTAP00000001038/1-1356 EMYQTMLDCW HGDPNQRPTF SELVEHLGNL LQANAQQDGK DYIVLPISET BACU002238/1-1384 EMYQTMLDCW HGEPNQRPTF SELVEHLGNL LQANAQQDGK DYIVLPISET bmy_09831T0/1-1407 SRYQTMLDCW HGEPNQRPTF SELVEHLGNL LQANAQQDGK DYIVLPISET ENSTTRP00000002294/1-1307 EMYQTMLDCW HGEPNQRPTF SELVEHLGNL LQANAQQDGK DYIVLPISET 1301 1350 ENSP00000263923/1-1356 LSMEEDSGLS LPTSPVSCME EEEVCDPKFH YDNTAGI--- -SQYLQNSKR ENSBTAP00000001038/1-1356 LSMEEDSGLS LPTSPVSCME EEEVCDPKFH YDNTAGI--- -SQYLQNSKR BACU002238/1-1384 LSMEEDSGLS LPTSPVSCME EEEVCDPKFH YDNTAG---- -XQYLQNSKR bmy_09831T0/1-1407 LSMEEDSGLS LPTSPVSCME EEEVCDPKFH YDNTAGIRYX LSQYLQNSKR ENSTTRP00000002294/1-1307 LSMEEDSGLS LPTSPVSCME EEEVCDPKFH YDNTAGI--- -SQYLQNSKR 1351 1400 ENSP00000263923/1-1356 KSRPVSVKTF EDIPLEEPEV KVIPDDNQTD SGMVLASEEL KTLEDRTKLS ENSBTAP00000001038/1-1356 KSRPVSVKTF EDIPLEEPEV KVIPDDSQTD SGMVLASEEL KTLEDRTKLA BACU002238/1-1384 KSRPVSVKTF EDIPLEEPEV KVIPDDNQTD SGMVLASEEL KTLEDRTKLA bmy_09831T0/1-1407 KSRPVSVKTF EDIPLEEPEV KVIPDDNQTD SGMVLASEEL KTLEDRTKLA ENSTTRP00000002294/1-1307 KSRPVSVKTF EDIPLEEPEV KVIPDDNQTD SGMVLASEEL KTLEDRSKLA 1401 1450 ENSP00000263923/1-1356 PSFGGMVPSK SRESVASEGS NQTSGYQSGY HSDDTDTTVY SSEEAELLKL ENSBTAP00000001038/1-1356 PSFSGLMPSK SKESVASEGS NQTSGYQSGY HSDDTDTTVY SSEEAELLKL BACU002238/1-1384 PSFSGMMPSK SKESVASEGS NQTSGYQSGY HSDDTDTTVY SSEEAELLKL bmy_09831T0/1-1407 PSFSGMMPSK SKESVASEGS NQTSGYQSGY HSDDTDTTVY SSEEAELLKL ENSTTRP00000002294/1-1307 PSFSGMMPSK SKESVASEGS NQTSGYQSGY HSDDTDTTVY SSEEAELLKL 1451 1500 ENSP00000263923/1-1356 IEIGVQTGST AQILQPDSGT TLSSPPV ENSBTAP00000001038/1-1356 MEIGPQVGSA APILQPDSGT TLSSPPI BACU002238/1-1384 VEMGPQAGSA AQILQPDTGI TLSSPPV bmy_09831T0/1-1407 VEMGPQAGSA AQILQPDTGI TLSAPPV ENSTTRP00000002294/1-1307 VEIGPQAGSA AQILQPDTGI TLSSPPV