KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:13:02 2014 Check: 00 .. Name: BACU012032/1-1083 Len: 1154 Check: 9672 Weight: 1.00 Name: bmy_19533T0/1-965 Len: 1154 Check: 8055 Weight: 1.00 Name: ENSP00000336747/1-1037 Len: 1154 Check: 522 Weight: 1.00 Name: ENSBTAP00000001039/1-1037 Len: 1154 Check: 1158 Weight: 1.00 Name: ENSTTRP00000000988/1-1024 Len: 1154 Check: 3197 Weight: 1.00 // 1 50 BACU012032/1-1083 -----MRFRS IQTHVESSLY AQAPGGLLPP PHPPKTNTLT TKSLVPMFRK bmy_19533T0/1-965 ---------- -PSPLPLVF- ---------- ---------Q TVS------- ENSP00000336747/1-1037 MDRMASSMKQ VPNPLPKVLS RRGVGAGLEA AERESFERTQ TVS------- ENSBTAP00000001039/1-1037 MDRMASSMKQ VPNPLPKVLS RRGVGAGMEA AERESFERTQ TVS------- ENSTTRP00000000988/1-1024 ---------- --NPL-KVLS RRGVGAGMEA AERESFERTQ TVS------- 51 100 BACU012032/1-1083 QAQVNPTSPS CKASVKKKKK KGTKVTNPPS PIASLVPLQE ERTARSIPFC bmy_19533T0/1-965 ---INKAINT QEVAVKEKHA RT-------- ---CILGTHH EKGAQTF--- ENSP00000336747/1-1037 ---INKAINT QEVAVKEKHA RT-------- ---CILGTHH EKGAQTF--- ENSBTAP00000001039/1-1037 ---INKAINT QVVAVKEKHA RT-------- ---CILGTHH EKGAQTF--- ENSTTRP00000000988/1-1024 ---INKAINT QEVAVKEKHA RT-------- ---CILGTHH EKGAQTF--- 101 150 BACU012032/1-1083 PAQQVLTGAP ASSVYPKPPN LTRNAVLCWK FCHVFHKLLR DGHPNVLKDS bmy_19533T0/1-965 ---------- -WSVVNRLP- LSSNAVLCWK FCHVFHKLLR DGHPNVLKDS ENSP00000336747/1-1037 ---------- -WSVVNRLP- LSSNAVLCWK FCHVFHKLLR DGHPNVLKDS ENSBTAP00000001039/1-1037 ---------- -WSVVNRLP- LSSNAVLCWK FCHVFHKLLR DGHPNVLKDS ENSTTRP00000000988/1-1024 ---------- -WSVVNRLP- LSSNAVLCWK FCHVFHKLLR DGHPNVLKDS 151 200 BACU012032/1-1083 LRYKNELSDM SRMWGHLSEG YGQLCSI--Y LKLLRTKMEY HTKNPRFPGN bmy_19533T0/1-965 LRYKNELSDM SRMWVSLDTH PGATCATLSF PRGLRTRTVE WNKNPRFPGN ENSP00000336747/1-1037 LRYRNELSDM SRMWGHLSEG YGQLCSI--Y LKLLRTKMEY HTKNPRFPGN ENSBTAP00000001039/1-1037 LRYKSELSDM SRMWGHLSEG YGQLCSI--Y LKLLRTKMEY HTKNPRFPGN ENSTTRP00000000988/1-1024 LRYKNELSDM SRMWGHLSEG YGQLCSI--Y LKLLRTKMEY HTKNPRFPGN 201 250 BACU012032/1-1083 LQMSDRQLDE AGESDVNNFF QLTVEMFDYL ECELNLFQTV FNSLDMSRSV bmy_19533T0/1-965 LQMSDRQLDE AGESDVNNFF QLTVEMFDYL ECELNLFQTV FNSLDMSRSV ENSP00000336747/1-1037 LQMSDRQLDE AGESDVNNFF QLTVEMFDYL ECELNLFQTV FNSLDMSRSV ENSBTAP00000001039/1-1037 LHMSDRQLEE AGESDVNNFF QLTVEMFDYL ECELNLFQTV FNSLDMSRSV ENSTTRP00000000988/1-1024 LQMSDRQLDE AGESDVNNFF QLTVEMFDYL ECELNLFQTV FNSLDMSRSV 251 300 BACU012032/1-1083 SVTTAGQCRL APLIQVILDC SHLYDYTVKL LFKLHSCLPA DTLQGHRDRF bmy_19533T0/1-965 SVTTAGQCRL APLIQVILDC SHLYDYTVKL LFKLHSCLPA DTLQGHRDRF ENSP00000336747/1-1037 SVTAAGQCRL APLIQVILDC SHLYDYTVKL LFKLHSCLPA DTLQGHRDRF ENSBTAP00000001039/1-1037 SVTTAGQCRL APLIQVILDC SHLYDYAVKL LFKLHSCLPA DTLQGHRDRF ENSTTRP00000000988/1-1024 SVTTAGQCRL APLIQVILDC SHLYDYTVKL LFKLHSCLPA DTLQGHRDRF 301 350 BACU012032/1-1083 MEQFTKLKDL FYRSSNLQYF KRLIQIPQLP DNPPNFLRAS ALSEHISPVV bmy_19533T0/1-965 MEQFTKLKDL FYRSSNLQYF KRLIQIPQLP DNPPNFLRAS ALSEHISPVV ENSP00000336747/1-1037 MEQFTKLKDL FYRSSNLQYF KRLIQIPQLP ENPPNFLRAS ALSEHISPVV ENSBTAP00000001039/1-1037 LEQFTKLKDF FYRSSNLQYF KRLIQIPQLP ENPPNFLRAS ALSEHVSPVV ENSTTRP00000000988/1-1024 MEQFTKLKDL FYRSSNLQYF KRLIQIPQLP ENPPNFLRAS ALSEHISPVV 351 400 BACU012032/1-1083 VIPAEASSPD SEPVLEKDDL MDMDASQQNS YDSKFDDIFG SSSSSDPFNF bmy_19533T0/1-965 VIPAEASSPD SEPVLEKDDL MDMDASQQNS YDSKFDDIFG SSSSSDPFNF ENSP00000336747/1-1037 VIPAEASSPD SEPVLEKDDL MDMDASQQNL FDNKFDDIFG SSFSSDPFNF ENSBTAP00000001039/1-1037 VIPAEASSPD SEPVLEKDDL MGMDASQQNS FDSKFDDIFG SSSSSDPFNF ENSTTRP00000000988/1-1024 VIPAEASSPD SEPVLEKDDL MDMDASQQNS YDSKFDDIFG SSSSSDPFNF 401 450 BACU012032/1-1083 NSQNGVNKDE KDHLIDQLYG EISGLKAQLE NMKTESHRAM LQLKGRISEL bmy_19533T0/1-965 NSQNGVNKDE KDHLIDQLYG EISGLKAQLE NMKTESHRAM LQLKGRISEL ENSP00000336747/1-1037 NSQNGVNKDE KDHLIERLYR EISGLKAQLE NMKTESQRVV LQLKGHVSEL ENSBTAP00000001039/1-1037 NSQNGVNKDE KDQLIDQLFG ETRELKAQLE NMKTESQRAV LQLKGRTSEL ENSTTRP00000000988/1-1024 NSQNGVNKDE KDHLIDQLYR EISGLKAQLE NMKTESHRAM LQLKGRISEL 451 500 BACU012032/1-1083 EAELAEQQHL RQQAADESEF LRAELDELKK KREDTEKAQR SLTEIER--- bmy_19533T0/1-965 EAELAEQQHL RQQAADESEF LRAELDELKK KREDTEKAQR SLTEIERGTI ENSP00000336747/1-1037 EADLAEQQHL RQQAADDCEF LRAELDELRR QREDTEKAQR SLSEIER--- ENSBTAP00000001039/1-1037 EAELAEQQHL RQQAADESEF LRAELDELKK KREDTEKAQR SLTEIER--- ENSTTRP00000000988/1-1024 EAELAEQQHL RQQAADDSEF QRAELDELKK KREDTEKAQR SLTEIER--- 501 550 BACU012032/1-1083 ---------- ---------- --------KA QANEQRYSKL KEKYSELVQN bmy_19533T0/1-965 FWGFWLIGRR TEGPRQCRPL TLVHDNTGKA QANEQRYSKL KEKYSELVQN ENSP00000336747/1-1037 ---------- ---------- --------KA QANEQRYSKL KEKYSELVQN ENSBTAP00000001039/1-1037 ---------- ---------- --------KA QANEQRYSKL KEKYNELVQN ENSTTRP00000000988/1-1024 ---------- ---------- --------KA QANEQRYSKL KEKYSELVQN 551 600 BACU012032/1-1083 HADLLRKNAE VTKQVSVARQ AQVDLEREKK ELEDSFQRIS DQAQRKTQEQ bmy_19533T0/1-965 HADLLRKNAE VTKQVSVARQ AQVDLEREKK ELEDSFQRIS DQAQRKGQIP ENSP00000336747/1-1037 HADLLRKNAE VTKQVSMARQ AQVDLEREKK ELEDSLERIS DQGQRKTQEQ ENSBTAP00000001039/1-1037 HAALLRKNAE VTKQVSVARQ AQVDLEREKK ELEDSFQRIS DQAQRKTQEQ ENSTTRP00000000988/1-1024 HADLLRKNAE VTKQVSVARQ AQVDLEREKK ELEDSFQRVS DQAQRKTQEQ 601 650 BACU012032/1-1083 TEVLESLKQE LATSKQELHI VQGSLESSAQ SEAKWTAQIA ELEKERGRLV bmy_19533T0/1-965 CGLVVGLDL- WKGDSLILPA TPSSHSVALQ SEAKWTAQIA ELKKERGSLV ENSP00000336747/1-1037 LEVLESLKQE LATSQRELQV LQGSLETSAQ SEANWAAEFA ELEKERDSLV ENSBTAP00000001039/1-1037 TEVLENLKQE LATSKQELQI VQGSLENSAQ SEAKWTAQIT DLEKDRDSLM ENSTTRP00000000988/1-1024 TEVLESLKQE LATSKQELQI VQGSLESSAQ SEAKWTAQIA ELEKERGGLV 651 700 BACU012032/1-1083 EAVACREEEL SSLREQLEYT QIKLSSAQAS NGRPLGLTKS NFIPMGLGSE bmy_19533T0/1-965 DAVACREEEL STLREQLEYT QIKLSSTQ-- ---------- ---------- ENSP00000336747/1-1037 SGAAHREEEL SALRKELQDT QLKLASTE-- ---------- ---------E ENSBTAP00000001039/1-1037 SAMACREEEL SALREQLEYT QLKLSSAQ-- ---------- ---------E ENSTTRP00000000988/1-1024 EAMACREEEL SALRQQLEYT QIKLSSTE-- ---------- ---------X 701 750 BACU012032/1-1083 SVCRLAKDQR KMLLAESRRA AEQVVQEALR RFEEPTLFSC AGSADHLLST bmy_19533T0/1-965 -----ASNRR PLGLTKSNFI PMGLGSITYS PRSGPFPAAS SNWKN----- ENSP00000336747/1-1037 SMCQLAKDQR KMLLVGSRKA AEQVIQDALN QLEEPPLISC AGSADHLLST ENSBTAP00000001039/1-1037 SICRLEKDQH KMLLAEARRA AEQVVQEALR LFEEPTLSSC AGSADHLLSK ENSTTRP00000000988/1-1024 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXHLLSK 751 800 BACU012032/1-1083 VRSVSSCIEQ LEKCWSQYLA CPEDISGLLH SVTLLAHLTG DTIVHGSTTC bmy_19533T0/1-965 ---------- ---------- AGANISGLLH SVTLLAHLTS DTIVHGSTTC ENSP00000336747/1-1037 VTSISSCIEQ LEKSWSQYLA CPEDISGLLH SITLLAHLTS DAIAHGATTC ENSBTAP00000001039/1-1037 VNSTSSCIEQ LEKCWSQYLA CPEDISGLLH SVTLLAHLTS DTIVHGSATC ENSTTRP00000000988/1-1024 VRSVSSCIEQ LEKCWSQYLA CPEAISGLLH SVTLLAHLTS DTIVHGSTTC 801 850 BACU012032/1-1083 LRAPPEPAD- ---------- ---------- ------SLTE ACKQYGRETL bmy_19533T0/1-965 LRAPPEPADC KYQGEGPPPQ HGEQGAFKSL CRLASAALTE ACKQYGRETL ENSP00000336747/1-1037 LRAPPEPAD- ---------- ---------- ------SLTE ACKQYGRETL ENSBTAP00000001039/1-1037 LRAPPESAD- ---------- ---------- ------SLID ACKQYGKETL ENSTTRP00000000988/1-1024 LRAPPEPAD- ---------- ---------- ------SLTE ACKQYGRETL 851 900 BACU012032/1-1083 TYLSFLEEEG IVENADSTAM RSCLARITAI GEELLPRGLD IKQEELGDLV bmy_19533T0/1-965 TYLSFLEEEG IVENADSTAM RSCLARITAI GEELLPRGLD IKQEELGDLV ENSP00000336747/1-1037 AYLASLEEEG SLENADSTAM RNCLSKIKAI GEELLPRGLD IKQEELGDLV ENSBTAP00000001039/1-1037 TYLSFLEEER IFENADSTAM RSCLTRITAI SEDLLPRGLD IKQEELGDLV ENSTTRP00000000988/1-1024 TYLSFLEEEG IVESADSTAM RSCLTRITAI GEELLPRGLD IKQEELGDLV 901 950 BACU012032/1-1083 DKEMAATSAA IETATARIEE MLSKSRAGDT GVKLEVNERI LGSCTSLMQA bmy_19533T0/1-965 DKEMAATSAA IETATARIEE MLSKSRAGDT GVKLEVNERI LGSCTSLMQA ENSP00000336747/1-1037 DKEMAATSAA IETATARIEE MLSKSRAGDT GVKLEVNERI LGCCTSLMQA ENSBTAP00000001039/1-1037 DKEMAATSAA IEAATARIEE MLSKSRAGDT GVKLEVNERI LGSCTSLMQA ENSTTRP00000000988/1-1024 DKEMAATSAA IETATARIEE MLSKSRAGDT GVKLEVNERI LGSCTSLMQA 951 1000 BACU012032/1-1083 IQVLIVASKE LQREIVESGR GTASPKEFYA KNSRWTEGLI SASKAVGWGA bmy_19533T0/1-965 IQVLIVASKE LQREIVESGR ---------- ---------- ---------- ENSP00000336747/1-1037 IQVLIVASKD LQREIVESGR GTASPKEFYA KNSRWTEGLI SASKAVGWGA ENSBTAP00000001039/1-1037 IQILVLASKE LQREIVESGR GTASPKEFYA KNSRWTEGLI SAAKAVGWGA ENSTTRP00000000988/1-1024 IKVLIVASKE LQREIVESGR GTASPKEFYA KNSRWTEGLI SASKAVGWGA 1001 1050 BACU012032/1-1083 TVMVDAADLV VQGRGKFEEL MVCSHEIAAS TAQLVAASKV KADKDSPNLT bmy_19533T0/1-965 ---------- ---------- ---------- ---------V KADKDSPNLT ENSP00000336747/1-1037 TVMVDAADLV VQGRGKFEEL MVCSHEIAAS TAQLVAASKV KADKDSPNLA ENSBTAP00000001039/1-1037 TVLVDAADMV VQGRGKFEEL MVCSREIAAS TAQLVAASKV KADKNSPNLA ENSTTRP00000000988/1-1024 TVMVDAADLV VQGRGKFEEL MVCSHEIAAS TAQLVAASKV KADKDSPNLA 1051 1100 BACU012032/1-1083 QLQQASRGVN QATAAVVAST ISGKSQIEDT DSMDFSSMTL TQIKRQEMDS bmy_19533T0/1-965 QLQQASRGVN QATAAVVAST TSGKSQIEDT DSMDFSSMTL TQIKRQEMDS ENSP00000336747/1-1037 QLQQASRGVN QATAGVVAST ISGKSQIEET DNMDFSSMTL TQIKRQEMDS ENSBTAP00000001039/1-1037 QLLQASRAVN QATAEVVAST ISGKSQIEDT DSMDFSSITL TQIKRQEMDS ENSTTRP00000000988/1-1024 QLQQASRGVN QATAAVVAST ISGKSQIEDT DSMDFSSMTL TQIKRQEMDS 1101 1150 BACU012032/1-1083 QVRVLELENE LQKERQKLGE LRKKHYELAG VAEGWEEAHL FSP------V bmy_19533T0/1-965 QVRVLELENE LQKERQKLGE LRKKHYELAG VAEGWEEGTE ASPPTLQEAI ENSP00000336747/1-1037 QVRVLELENE LQKERQKLGE LRKKHYELAG VAEGWEEGTE ASPPTLQEVV ENSBTAP00000001039/1-1037 QVRVLELENE LQKERQKLGE LRKKHYELAG VAEGWEEGTE APPSTLQEAK ENSTTRP00000000988/1-1024 QVRVLELENE LQKERQKLGE LRKKHYELAG VAEGWEEGTE ASPPTLQEAI 1151 1200 BACU012032/1-1083 VNNL bmy_19533T0/1-965 TEKE ENSP00000336747/1-1037 TEKE ENSBTAP00000001039/1-1037 TEKE ENSTTRP00000000988/1-1024 TEKE