KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:13:05 2014 Check: 00 .. Name: bmy_19334T0/1-399 Len: 447 Check: 857 Weight: 1.00 Name: BACU001127/1-313 Len: 447 Check: 1116 Weight: 1.00 Name: ENSP00000367433/1-411 Len: 447 Check: 9098 Weight: 1.00 Name: ENSTTRP00000015443/1-398 Len: 447 Check: 6871 Weight: 1.00 Name: ENSBTAP00000001048/1-416 Len: 447 Check: 2619 Weight: 1.00 // 1 50 bmy_19334T0/1-399 ---------- ---------- ---------- MFQLALDLPA CESLGPGPEF BACU001127/1-313 ---------- -MFIRWPGCS LGSHAWILIA MFQLALDLPA CESLGPGPEF ENSP00000367433/1-411 MWIQQLLGLS SMSIRWPGRP LGSHAWILIA MFQLAVDLPA CEALGPGPEF ENSTTRP00000015443/1-398 ---------- SMFIRWPGCS LGSHAWILIA MFQLALDLPA CESLGPGPEF ENSBTAP00000001048/1-416 LYLCFILGQS SMFIRWPGCS LGSHAWILIA MFQLALDLPT CESLGPGPEF 51 100 bmy_19334T0/1-399 RLLPRLPHRP PRVWSFKSGQ PARVPAPVWS PRPPRLERGH SHGQMLSPRA BACU001127/1-313 RLLPRLPHRP PRVWSFKSGQ PARVPAPVWS PRPPRLERGH SHGQMLSPRA ENSP00000367433/1-411 WLLPRSPPRP PRLWSFRSGQ PARVPAPVWS PRPPRVER-- IHGQMQMPRA ENSTTRP00000015443/1-398 RLLPRLPHRP PRLWSFKSGQ PARVPAPVWS PRPPRLER-- VHGQMLSPRA ENSBTAP00000001048/1-416 RLLPRPPHRP PRLWSFKSGQ PARIPAPVWS PRPPRVERGH SHGQMPSPRA 101 150 bmy_19334T0/1-399 RRAHRPRDQV AALGPKAGLA KPPAAAKSSP SLGSSSSSSS SAGGSGAPTD BACU001127/1-313 RRAHRPRDQV ATLGPKAGLA KPPAAAKSSP SLGSSSSSSS SAGGSGAPTD ENSP00000367433/1-411 RRAHRPRDQA AALVPKAGLA KPPAAAKSSP SLASSSSSSS SAVAGGAP-E ENSTTRP00000015443/1-398 RRAHRPRDQV AALGPKGGLA KPPAAAKSSP SLG----PSS SAGGSGAPTD ENSBTAP00000001048/1-416 RRAHRPRDQE ATLGPKGGLA KPPAAAKSSP SLGSSPTSSS SAGASGAPTD 151 200 bmy_19334T0/1-399 QQALLRRGKR HLQGPAFSSF DFRGSRPTTE TEFIAWGPTG EEEAPESNTF BACU001127/1-313 QQALLRRGKR HLQGPVFNSF DFRGSRPTTE TEFIAWGPTG EEEAPESNTF ENSP00000367433/1-411 QQALLRRGKR HLQGDGLSSF DSRGSRPTTE TEFIAWGPTG DEEALESNTF ENSTTRP00000015443/1-398 QQALLRRGKR HLQGPAFNSF DFQGSRPTTE TEFIAWGPTG EEEAPESNTF ENSBTAP00000001048/1-416 QQALLRRGKR HLQGPAFNSF DFRGSRPTTE TEFIAWGPTG EEEALESNTF 201 250 bmy_19334T0/1-399 PGVYGPTKVS IFQTRKTAVA TATATATATT ATSVTLQTQG VTEPLDPRSG BACU001127/1-313 PGVYGPTKVS IFQTRKTAVA TATATATATT ATSVTLQTQG VTEPLDPRSG ENSP00000367433/1-411 PGVYGPTTVS ILQTRKTTVA --ATTTTTTT ATPMTLQTKG FTESLDPRRR ENSTTRP00000015443/1-398 PGVYGPTTVS IFQTRKTAVA --TATATATT ATSVTLQTQG LTEPLDPRSG ENSBTAP00000001048/1-416 PGFYGPTTVS IFQTRKTTVA TTTTTATAST ATSVTLQTQG VTEPLDPRSR 251 300 bmy_19334T0/1-399 KPVGVSTTEP STSPSRDSGK VSKPPRVLGE TSESNIS--- ---------V BACU001127/1-313 KPVGVSTTEP STSPSRDSGK VSKPPRVLGE TSGVSEPH-- ---------- ENSP00000367433/1-411 IPGGVSTTEP STSPS-NNGE VTQPPRILGE ASGLAVHQII TITVSLIMVI ENSTTRP00000015443/1-398 KPVGVSTTEP STSPSRDSGK VSKPPRVLGE TSGLAVHQII TITVSLIMVI ENSBTAP00000001048/1-416 IPVGVSTTEP STSPSRDSGQ DSQPPRVLGE TSGLAVHQII TITVSLIMVI 301 350 bmy_19334T0/1-399 EAKPSSISTP GAGGRDGGTE ASGITVSPRR KTEKRKVISW ALIFSLVKGA BACU001127/1-313 ---------- -QT--QG--- ------NIFL NGRT------ ---------- ENSP00000367433/1-411 AALITTLVLK NCCAQSG--- ------NTRR NSHQRK---- ---------T ENSTTRP00000015443/1-398 AALITTLVLK NCCAQSG--- ------NPRR NSHQRK---- ---------A ENSBTAP00000001048/1-416 AALITTLVLK NCCAQSG--- ------NPRR NSHQRK---- ---------T 351 400 bmy_19334T0/1-399 AGSLSQLVSV PAFAQCGISW ALGLPSVLSK DFPDLTFLDP ACWPPAPACT BACU001127/1-313 ---------- ---PAPGPAW ELDV------ ---------- ----STPA-- ENSP00000367433/1-411 NQQEESCQNL TDFPSARVPS SLDIFTAYNE ---TLQCSHE CVRASVPVYT ENSTTRP00000015443/1-398 NHQEESCQNL TDFTTARVPS SLDIFTAYNE ---TLQCSHE CVRASVPVYT ENSBTAP00000001048/1-416 NHQEESCQNL TDFTPARVPS SLDIFTAYNE ---TLQCSHE CVRASVPVYT 401 450 bmy_19334T0/1-399 DTSDAFPTCL CSQLREGALP RRASVPIVIQ DLSPSGSVTD S------ BACU001127/1-313 ---------- -----DGDRV RVDN------ ---------- ------- ENSP00000367433/1-411 DETLHSTTGE YKSTFNGNRP SSSD-----R HLIPVAFVSE KWFEISC ENSTTRP00000015443/1-398 DETLH-PAGE YKSTFNGNRP SSSD-----R HLIPVAFVSE KWFEISC ENSBTAP00000001048/1-416 DETLH-PAGE YKSTFNGNRP SSSD-----R HLIPVAFVSE KWFEISC