KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:13:06 2014 Check: 00 .. Name: ENSP00000357823/1-267 Len: 304 Check: 6978 Weight: 1.00 Name: ENSBTAP00000001054/1-268 Len: 304 Check: 1053 Weight: 1.00 Name: ENSTTRP00000002950/1-212 Len: 304 Check: 9978 Weight: 1.00 Name: bmy_18548T0/1-213 Len: 304 Check: 7355 Weight: 1.00 Name: BACU007260/1-300 Len: 304 Check: 1090 Weight: 1.00 // 1 50 ENSP00000357823/1-267 MAAPVVTAPG RALLRAGAGR LLRGGVQELL RPRHEGNAPD LACNFSLSQN ENSBTAP00000001054/1-268 MAAAAFAVPR GVQLRVLTER LLRGGVRELL RPRLSGSTPG SERDFSLSHS ENSTTRP00000002950/1-212 ---------- ---------- ---------- ---------- ---------- bmy_18548T0/1-213 ----MAAAPG RALLRAGTER LVRGGVWELL RPRLEGGTSG SERDFSLSHS BACU007260/1-300 ----MAAASG RALLRAGTER LVRGGVWELL RPRLEGGTSG SERDFSLSHS 51 100 ENSP00000357823/1-267 RGTVIVERWW KVPLAGEGRK PRLHRRHRVY KLVEDTKHRP KENLELILTQ ENSBTAP00000001054/1-268 RGTVIVERWW KVPLAGEGRK PRLHRRHRVY KLVEDTKHRP KENLELILTQ ENSTTRP00000002950/1-212 -GTV-VERWW KVPLAGEGRK PR-HRRHRVY KLAEDTKHRP KDNLELILTQ bmy_18548T0/1-213 RGTVIVERWW KVPLAGEGRK PRLHRRHRVY KLAEDTKHRP KDNLELILTQ BACU007260/1-300 RGTVIVERWW KVPLAGEGRK PRLHRRHRVY KLAEDTKHRP KDNLELILTQ 101 150 ENSP00000357823/1-267 SVENVGVRGD LVSVKKSLGR NRLLPQGLAV YASPENKKLF EEEKLLRQEG ENSBTAP00000001054/1-268 SVDELGVRGD LVSVKKSVGR NRLLPEGLAV YASPENKKLF EEEKLLRQEG ENSTTRP00000002950/1-212 SVEELGVRGD LVSVKKSVGR NRLLPQGLAV YASPENRKLF EEEKLLRQEG bmy_18548T0/1-213 SVEELGVRGD LVSVKKSVGR NRLLPQGLAV YASPENRKLF EEEKL----- BACU007260/1-300 SVEELGVRGD LVSVKKSVGR NRLLPQGLAV YASPENRKLF EEEKLLRQEG 151 200 ENSP00000357823/1-267 KLEKIQTKAG EA-------- ---------- ---------- --------TV ENSBTAP00000001054/1-268 KLDKIQTKAG EA-------- ---------- ---------- --------TV ENSTTRP00000002950/1-212 KLEKIQTKEG ET-------- ---------- ---------- --------TV bmy_18548T0/1-213 ---------- ---------- ---------- ---------- ---------- BACU007260/1-300 KLEKIQTKAG ETVSRNIENL YLLVTYKVTN LFLKDFLISL KSPDFKHKTV 201 250 ENSP00000357823/1-267 KFLKSCRLEV GMKNNVKWEL NPEIVARHFF KNLGVVVAPH TLKLPEEPIT ENSBTAP00000001054/1-268 KFLRSCHLEV GMKNNVKWEL NPEIVARHFL RNLGVVVAPH ALKLPEEPIT ENSTTRP00000002950/1-212 KFLRRCHLQV GMKNNVKWEL NPEIVARHFL RNLGVVVAPH ALKLPEEPIT bmy_18548T0/1-213 ---------- ---------- ---------- --LGVVVAPH ALKLPEEPIT BACU007260/1-300 RFLRRCHLQV GMKNNVKWEL NPEIVAGHFL RNLGVVVAPH ALKLPEEPIT 251 300 ENSP00000357823/1-267 RWGEYWCEVT VNGLDTVRVP MSVVNFEKPK TKRYKYWLAQ QAAKAMAPTS ENSBTAP00000001054/1-268 QRGEYWCEVT VNGLDTVRVP MSVVNFERPK TKRYKYWLAQ QAAKGMASTS ENSTTRP00000002950/1-212 QRGEYWCEVT VNGLDTVRVP MSVVNFERPK TKRYKYWLAQ QAA---SSTG bmy_18548T0/1-213 QRGEYWCEVT VNGLDTVRVP MSVVNFERPK TKRYKYWLAQ QAAKGMAPTS BACU007260/1-300 QRGEYWCEVT VNGLDTVRVP MSVVNFERPK TKRYKYWLAQ QAAKGMAPTS 301 350 ENSP00000357823/1-267 PQI- ENSBTAP00000001054/1-268 FQKI ENSTTRP00000002950/1-212 SQTI bmy_18548T0/1-213 SQTI BACU007260/1-300 SQTI