KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:13:06 2014 Check: 00 .. Name: ENSP00000256178/1-322 Len: 323 Check: 9663 Weight: 1.00 Name: ENSBTAP00000001061/1-322 Len: 323 Check: 9208 Weight: 1.00 Name: ENSTTRP00000003571/1-320 Len: 323 Check: 2382 Weight: 1.00 Name: bmy_04501T0/1-313 Len: 323 Check: 3352 Weight: 1.00 Name: BACU005658/1-287 Len: 323 Check: 992 Weight: 1.00 // 1 50 ENSP00000256178/1-322 MARCFSLVLL LTSIWTTRLL VQGSLRAEEL SIQVSCRIMG ITLVSKKANQ ENSBTAP00000001061/1-322 MAKFFSLGLL LASIWTTRLL VQGSLRSEEI SILGPCRIMG VTLVTKKTQP ENSTTRP00000003571/1-320 MAKYFSLVLL LGSIWTTRLL VQSL--AQKL SISGPCRIMG VTLVNKRTHP bmy_04501T0/1-313 MAKYFSLVLL LASIWTTRLL VQGSLRTEEL SISGPCRIMG VTLVNKRTHP BACU005658/1-287 ---------- ---------- ---------- -----CRIMG VTLVNKRTHP 51 100 ENSP00000256178/1-322 QLNFTEAKEA CRLLGLSLAG KDQVETALKA SFETCSYGWV GDGFVVISRI ENSBTAP00000001061/1-322 LLNFTEAQEA CRLVGLTLAS QDQVEEARKF GFETCSYGWV KNQFVVIPRI ENSTTRP00000003571/1-320 QLNFTEAQEA CRLVGLTLAS KEQVEAAWKS GFETCSYGWV KNQFVVIPRI bmy_04501T0/1-313 QLNFTEAQEA CRLVGLTLAS KEQVEAAWKF GFETCSYGWV KNQFVVIPRI BACU005658/1-287 QLNFTEAQEA CRLVGLTLAS KEQVEAAWKS GFETCSYGWV KNQFVVIPRI 101 150 ENSP00000256178/1-322 SPNPKCGKNG VGVLIWKVPV SRQFAAYCYN SSDTWTNSCI PEIITTKDPI ENSBTAP00000001061/1-322 ISNPKCGKSG VGVVIWRSSL SSRHRSYCHN SSDIWINSCL PEIITTDDPL ENSTTRP00000003571/1-320 IQNPKCGKNG VGVLIWRSSL NQRHRAYCHN SSDTWVNSCF PEIITTDDPI bmy_04501T0/1-313 IQNPKCGKNG VGVLIWRSSL NQQHRAYCHN SS-------- -EIITTDDPI BACU005658/1-287 IQNPKCGKNG VGVLIWRSSL NQQHRAYCHN SSDTWVNSCF PEIITTDDPI 151 200 ENSP00000256178/1-322 FNTQTATQTT EFIVSDSTYS VASPYSTIPA PTTTPPAPAS TSIPRRKKLI ENSBTAP00000001061/1-322 FNTETATYTT KLMVSDSTHS ELSTDGPDYV TTTVAPPLAS TSTPRKRKLI ENSTTRP00000003571/1-320 FNTETATYTT EMIVSESTHS ALSTDGPESI TPTVAPALAS TSIPRKRKLI bmy_04501T0/1-313 FNTETATYTT EMIASESTHS ALSTDGPDSI TPTVAPALAS TSIPRKRKLI BACU005658/1-287 FDTETATYTT EMIASESTHS ALSTEGPDST TPTAAPALAS TSIPRKRKLI 201 250 ENSP00000256178/1-322 CVTEVFMETS TMSTETEPFV ENKAAFKNEA AGFGGVPTAL LVLALLFFGA ENSBTAP00000001061/1-322 CITEAFMDTS AVATERESDI QNRPAFKNEA VGFGGVPTAL LVLALLFFAA ENSTTRP00000003571/1-320 CITEAFMETS TISTETESYI ENKAAFKNEP VGFGGVPTTL LVLALLFFAA bmy_04501T0/1-313 CITEAFMETS TISTETESYI ENKVAFKNEP VGFGGVPTTL LVLALLFFAA BACU005658/1-287 CITEAFMETS TVSTETESYI ETKAAFKNEP VGFGGVPTTL LVLALLFFAA 251 300 ENSP00000256178/1-322 AAGLGFCYVK RYVKAFPFTN KNQQKEMIET KVVKEEKAND SNPNEESKKT ENSBTAP00000001061/1-322 AAGLAVCYVK RYVKAFPFTN KNQQKEMIET KVVKEEKADD SNPNEESKKM ENSTTRP00000003571/1-320 AAGLAVCYIK RYVKAFPFTN KNQQKEMIET KVVKEEKADD SNPNEESKNM bmy_04501T0/1-313 AAGLAVCYVK RYVKAFPFTN KNQQKEMIET KVVKEEKADD NNPNEESKNT BACU005658/1-287 AAGLAVCYVK RYVKAFPFTN KNQQKEMIET KVVKEEKADD SNPNEESKNT 301 350 ENSP00000256178/1-322 DKNPEESKSP SKTTVRCLEA EV- ENSBTAP00000001061/1-322 NKTPEEPKSP PKTTVRCLEA EV- ENSTTRP00000003571/1-320 DKKPEEPKSQ P-TTVRCLEA EVY bmy_04501T0/1-313 DKKPEEPKSQ PKTTVRCLEA EV- BACU005658/1-287 DKKPEEPKSQ PKTTVRCLEA EV-