KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:13:08 2014 Check: 00 .. Name: ENSBTAP00000001080/1-975 Len: 1447 Check: 3646 Weight: 1.00 Name: ENSP00000351209/1-976 Len: 1447 Check: 616 Weight: 1.00 Name: bmy_08225T0/1-859 Len: 1447 Check: 1309 Weight: 1.00 Name: BACU005682/1-1328 Len: 1447 Check: 9274 Weight: 1.00 Name: ENSTTRP00000016478/1-974 Len: 1447 Check: 3076 Weight: 1.00 // 1 50 ENSBTAP00000001080/1-975 MGRRAPPACL ALLWGCALAA ASAAQGKEVV LLDFAAAKG- ----ELGWLT ENSP00000351209/1-976 MELQAARACF ALLWGCALAA AAAAQGKEVV LLDFAAAGG- ----ELGWLT bmy_08225T0/1-859 MERLAPRACL ALLWGCLLAA AAAAQGKEVG EESLRGVSGQ SVHAQPSLLP BACU005682/1-1328 MERLAPRACL ALLWGCLLAA TAAAQGKEVV LLDFAAAKG- ----ELGWLT ENSTTRP00000016478/1-974 MERLAPRACL ALLWGCLLAA AAAAQGKEVV LLDFAAAKG- ----ELGWLT 51 100 ENSBTAP00000001080/1-975 HPY------G KG-------- ---------- -------WDL LQNIMNDMPI ENSP00000351209/1-976 HPY------G KG-------- ---------- -------WDL MQNIMNDMPI bmy_08225T0/1-859 SPHSQVRGAG SGPRARTGSP KVKRSEQGVT QNEEMRQWDL MQNIMDDMPI BACU005682/1-1328 HPY------G KG-------- ---------- -------WDL MQNIMDDMPI ENSTTRP00000016478/1-974 HPY------G KG-------- ---------- -------WDL MQNIMDDMPI 101 150 ENSBTAP00000001080/1-975 YMYSVCNVVA GDQDNWLRTN WVYRGEAERI FIELKFTVRD CNSFPGGASS ENSP00000351209/1-976 YMYSVCNVMS GDQDNWLRTN WVYRGEAERI FIELKFTVRD CNSFPGGASS bmy_08225T0/1-859 YMYSVCNVVA GDQDNWLRTN WVYRGEAERI FIELKFTVRD CNSFPGGASS BACU005682/1-1328 YMYSVCNVVA GDQDNWLRTN WVYRGEAERI FIELKFTVRD CNSFPGGASS ENSTTRP00000016478/1-974 YMYSVCNVVA SDQDNWLRTN WVYRGEAERI FIELKFTVRD CNSFPGGASS 151 200 ENSBTAP00000001080/1-975 CKETFNLYYA ESDVDYGTNF QKRQFTKIDT IAPDEITGSS DFEARHVKLN ENSP00000351209/1-976 CKETFNLYYA ESDLDYGTNF QKRLFTKIDT IAPDEITVSS DFEARHVKLN bmy_08225T0/1-859 CKETFNLYYA ESDVDYGTNF QKRQFTKIDT IAPDEITVSS DFEARHVKLN BACU005682/1-1328 CKETFNLYYA ESDLDYGTNF QKRQFTKIDT IAPDEITVSS DFEARHVKLN ENSTTRP00000016478/1-974 CKETFNLYYA ESDVDYGTNF QKRQFTKIDT IAPDEITVSS DFEARHVKLN 201 250 ENSBTAP00000001080/1-975 VEERSVGPLT RKGFYLAFQD VGACVALLSV RVYYKKCPEL LKGLARFPET ENSP00000351209/1-976 VEERSVGPLT RKGFYLAFQD IGACVALLSV RVYYKKCPEL LQGLAHFPET bmy_08225T0/1-859 VEERSVGPLS RKGFYLAFQD IGACVALLSV RVYYKKCPEK LQGLAHFPET BACU005682/1-1328 VEERSVGPLS RKGFYLAFQD IGACVALLSV RVYYKKCPEK LQGLAHFPET ENSTTRP00000016478/1-974 VEERSVGPLS RKGFYLAFQD IGACVALLSV RVYYKKCPKL LKGLARFPET 251 300 ENSBTAP00000001080/1-975 IAGSDAPALA TVAGNCVEHA VVPPGGEEPR MHCAVDGEWL VPIGQCLCQA ENSP00000351209/1-976 IAGSDAPSLA TVAGTCVDHA VVPPGGEEPR MHCAVDGEWL VPIGQCLCQA bmy_08225T0/1-859 IAGSDAPSLA TVAGTCVDHA VVPPGGEEPR MHCAVDGEWL VPIGECLCQA BACU005682/1-1328 IAGSDAPSLA TVAGTCVDHA VVPPGGEEPR MHCAVDGEWL VPIGECLCQA ENSTTRP00000016478/1-974 IAGSDAPSLA IVDGTCLDHA VVPPGGEEPR MHCAVDGEWL VLIGQCLCEA 301 350 ENSBTAP00000001080/1-975 GYEKVEDACQ ACSPGFFKPE ASESPCLECP AHTLPSSEGA TACECEDGYF ENSP00000351209/1-976 GYEKVEDACQ ACSPGFFKFE ASESPCLECP EHTLPSPEGA TSCECEEGFF bmy_08225T0/1-859 GYEKVEDACQ G--------- ---------- ---------- ---------- BACU005682/1-1328 GYEKVEDACQ ACSPGFFKSE ASESPCLECP QHTLPSSEGA TACECEEGYF ENSTTRP00000016478/1-974 GYEKVEDACQ ACSPGFFKSE ASESPCLECP PHTLPSSEGA TACECEEGYF 351 400 ENSBTAP00000001080/1-975 RAPQDPLSLP CTRPPSAPHY LTAVGMGAKV ELRWTPPQDS GGREDLTYSV ENSP00000351209/1-976 RAPQDPASMP CTRPPSAPHY LTAVGMGAKV ELRWTPPQDS GGREDIVYSV bmy_08225T0/1-859 ---------- ---PPSAPHY LTAVGMGAKV ELRWTPPQDN GGREDITYSV BACU005682/1-1328 RAPQDPLSLP CTRPPSAPHY LTAVGMGAKV ELRWTPPQDN GGREDITYSV ENSTTRP00000016478/1-974 RAPQDPLSLL CTRPPSAPHY LTAVGMGAKV ELRWTPPQDN GGREDITYTV 401 450 ENSBTAP00000001080/1-975 SCEQCWPESG ECGPCEASVR YSEPPLGLTR TSVTVSDLEP HMNYTFTVEA ENSP00000351209/1-976 TCEQCWPESG ECGPCEASVR YSEPPHGLTR TSVTVSDLEP HMNYTFTVEA bmy_08225T0/1-859 TCEQCWPESG ECGPCEASVS YSEPPHGLTR TSVTVSDLEP HMNYTFAVEA BACU005682/1-1328 TCEQCWPESG ECGPCEASVS YSEPPHGLTR TSVTVSDLEP HMNYTFAVEA ENSTTRP00000016478/1-974 TCEQCWPESG ECGPCEASVR YSEPPHGLTR TSVTVSDLEP HMNYTFTVEA 451 500 ENSBTAP00000001080/1-975 RNGVSGLVST RSFRTASVSI NQTEPPKVKL ESRSTTSLSI SWIIPPLQQS ENSP00000351209/1-976 RNGVSGLVTS RSFRTASVSI NQTEPPKVRL EGRSTTSLSV SWSIPPPQQS bmy_08225T0/1-859 RNGVSDLVTS RSFLTASVSI NQTEPPKVKL EDRSTTSLSV SWSIPPPQQS BACU005682/1-1328 RNGVSDLVTS RSFLTASVSI NQTEPPKVKL EDRSTTSLSV SWSIPPPQQS ENSTTRP00000016478/1-974 RNGVSDLVTS RSFLTASVSI NQTXPSKEKL ENRSNHSMSV SWSILP-QQS 501 550 ENSBTAP00000001080/1-975 RVWKYEVTYR KKGDSNSYNV RRTEGFSVTL DDLAPDTVYL VQVQALTQEG ENSP00000351209/1-976 RVWKYEVTYR KKGDSNSYNV RRTEGFSVTL DDLAPDTTYL VQVQALTQEG bmy_08225T0/1-859 RVWKYEVTYR KKEDSNSYNV RRTEGFSVTL DDLTPDTIYL VQVQALTQEG BACU005682/1-1328 RVWKYEVTYR KKGDSNSYNV RRTEGFSVTL DDLAPDTIYL VQVQALTQEG ENSTTRP00000016478/1-974 RVWKYEVTYR KKGDSNSYNV RRTEGFSVTL DDLAPDTIYL VQVQALTQEG 551 600 ENSBTAP00000001080/1-975 QGAGSKVHEF QTLSTGGSGN MAVVGGVAVG AVLLLVLAGI GFFIHRRRKS ENSP00000351209/1-976 QGAGSKVHEF QTLSPEGSGN LAVIGGVAVG VVLLLVLAGV GFFIHRRRKN bmy_08225T0/1-859 QGAGSKVHEF QTLSTEGSSN MAVIGGVAVG VVLLLVLAGI GFFIHRRRKR BACU005682/1-1328 QGAGSKVHEF QTLSTEGSSN MAVIGGVAVG VVLLLVLAGI GFFIHRRRKS ENSTTRP00000016478/1-974 QGAGSKVHEF QTLSVEGSSN MAVIGGLAVG VVLLLVLAGI GFFIHRRRKS 601 650 ENSBTAP00000001080/1-975 LRTRQSSEDV YFSKS----- ---------- ---------- ---------- ENSP00000351209/1-976 QRARQSPEDV YFSKS----- ---------- ---------- ---------- bmy_08225T0/1-859 LRTRQSSEDV YFSKSGEMQH RLHAWPAVPT GLPSSVVEMG AARALPGRPR BACU005682/1-1328 LRTRQSSEDV YFSKS----- ---------- ---------- ---------- ENSTTRP00000016478/1-974 LRTRQSSEDV YFSKS----- ---------- ---------- ---------- 651 700 ENSBTAP00000001080/1-975 ---------- ---------- ---------- ---------- -------EQL ENSP00000351209/1-976 ---------- ---------- ---------- ---------- -------EQL bmy_08225T0/1-859 AAQRAEPEAP EVSGLLPTPP PPPPRQPLVG TPPLAKLSMT LPFLPLPEQL BACU005682/1-1328 ---------- ---------- ---------- ---------- -------EQL ENSTTRP00000016478/1-974 ---------- ---------- ---------- ---------- -------EQL 701 750 ENSBTAP00000001080/1-975 KPLKTYVDPH TYEDPNQAVL KFTTEIHPSC VTRQKVIGAG EFGEVYKGTL ENSP00000351209/1-976 KPLKTYVDPH TYEDPNQAVL KFTTEIHPSC VTRQKVIGAG EFGEVYKGML bmy_08225T0/1-859 KPLKTYVDPH TYEDPNQAVL KFTTEIHPSC VTRQKVIGAD ---------- BACU005682/1-1328 KPLKTYVDPH TYEDPNQAVL KFTTEIHPSC VTRQKVIGAG EFGEVYKGTL ENSTTRP00000016478/1-974 KPLKTYVDPH TYEDPNQAVL KFTTEIHPSS VTRQKVIGAG EFGEVYKGTL 751 800 ENSBTAP00000001080/1-975 KA-SGKKEVP VAIKTLKAGY TEKQRVDFLS EASIMGQFSH HNIIRLEGVV ENSP00000351209/1-976 KTSSGKKEVP VAIKTLKAGY TEKQRVDFLG EAGIMGQFSH HNIIRLEGVI bmy_08225T0/1-859 ---------- ---------- ---------- ---------- ---------- BACU005682/1-1328 KV-SGKKEVP VAIKTLKAGY TEKQRVDFLS EASIMGQFSH HNIIRLEGVV ENSTTRP00000016478/1-974 KV-SVKKEVP VAIKTLKAGY TEKQRVDFLS EASIMGQFSH HNIIRLEGVV 801 850 ENSBTAP00000001080/1-975 SKYKPLMIIT EYMENGALDK FLREKDGEFS VLQLVGMLRG VAAGMKYLAN ENSP00000351209/1-976 SKYKPMMIIT EYMENGALDK FLREKDGEFS VLQLVGMLRG IAAGMKYLAN bmy_08225T0/1-859 ---KPMMIIT EYMENGALDK FLR------- ---------- ---------- BACU005682/1-1328 SKYKPMMIIT EYMENGALDK FLREKDGEFS VLQLVGMLRG IAAGMKYLAN ENSTTRP00000016478/1-974 SKYKPMMIIA EYMENGALDK FLREKDGEFS VLQLVGMLRG IAAGMKYLAN 851 900 ENSBTAP00000001080/1-975 MSYVHRDLAA RNILVNSNLV CKVSDFGLSR VLEDDPEATY TTSGGKIPIR ENSP00000351209/1-976 MNYVHRDLAA RNILVNSNLV CKVSDFGLSR VLEDDPEATY TTSGGKIPIR bmy_08225T0/1-859 ---------- ---------- ---------- ---------- ---------- BACU005682/1-1328 MNYVHRDLAA RNILVNCNLV CKVSDFGLSR VLEDDPEATY TTSGGKIPIR ENSTTRP00000016478/1-974 MNYVHRDLAA RNILVNSNLV CKVSDFGLSR VLEDDPEATY TTSGGKIPIR 901 950 ENSBTAP00000001080/1-975 WTAPEAISYR KFTSASDVWS YGIVMWEVMT YGERPYWELS NHEVMKAIND ENSP00000351209/1-976 WTAPEAISYR KFTSASDVWS FGIVMWEVMT YGERPYWELS NHEVMKAIND bmy_08225T0/1-859 ---------- ---------- ---------- ---------- ---VMKAIND BACU005682/1-1328 WTAPEAISYR KFTSASDVWS YGIVMWEVMT YGERPYWELS NHEVMKAIND ENSTTRP00000016478/1-974 WTAPEAISYR KFTSASDVWS YGIVMWEVMT YGERPYWELS NHEVMKAIND 951 1000 ENSBTAP00000001080/1-975 GFRLPTPMDC PSAIYQLMMQ CWQQERTRRP KFADIVSILD KLIRAPDSLK ENSP00000351209/1-976 GFRLPTPMDC PSAIYQLMMQ CWQQERARRP KFADIVSILD KLIRAPDSLK bmy_08225T0/1-859 GFRLPTPMDC PSAIYQLMMQ CWQQERARRP KFADIVSILD KLIRAPESLK BACU005682/1-1328 GFRLPTPMDC PSAIYQLMMQ CWQQERARRP KFADIVSILD KLIRAPESLK ENSTTRP00000016478/1-974 GFRLPTPMDC PSAIYQLMMQ CWQQERARRP KFADIVSILD KLIRAPESLK 1001 1050 ENSBTAP00000001080/1-975 TLADFDPRVS IRLPSTSGSE GVPFRTVSEW LESIKMQQYT EHFLVAGYTT ENSP00000351209/1-976 TLADFDPRVS IRLPSTSGSE GVPFRTVSEW LESIKMQQYT EHFMAAGYTA bmy_08225T0/1-859 TLADFDPRVS IRLPSTSGSE GVPFRTVSEW LESIKMQQYA EHFLAAGYTA BACU005682/1-1328 TLADFDPRVS IRLPSTSGSE GVPFRTVSEW LESIKMQQYT EHFLAAGYTA ENSTTRP00000016478/1-974 TLADFDPRVS IRLPSTSGSE GVPFRTVSEW LESIKMQQYT EHFMAAGYTA 1051 1100 ENSBTAP00000001080/1-975 IEKVVQMTND DIKRIGVRLP GHQKRIAYSL LGLKDQV--- -NTVGVPI-- ENSP00000351209/1-976 IEKVVQMTND DIKRIGVRLP GHQKRIAYSL LGLKDQV--- -NTVGIPI-- bmy_08225T0/1-859 IEKVVQMTND DIKRIGVRLP GHQKRIAYSL LGLKDQV--- -NTVGIPI-- BACU005682/1-1328 IEKVVQMTND DIKRIGVRLP GHQKRIAYSL LGLKDQIPAA AHTVASPLAS ENSTTRP00000016478/1-974 IEKVVQMTND DIKRIGVRLP GHQKRIAYSL LGLKDQV--- -NTVGIPI-- 1101 1150 ENSBTAP00000001080/1-975 ---------- ---------- ---------- ---------- ---------- ENSP00000351209/1-976 ---------- ---------- ---------- ---------- ---------- bmy_08225T0/1-859 ---------- ---------- ---------- ---------- ---------- BACU005682/1-1328 HPPVWPFQQL HLTTTHLCAE SFSGSTVLPD LLTSTHKDCP VPQGTAPLNP ENSTTRP00000016478/1-974 ---------- ---------- ---------- ---------- ---------- 1151 1200 ENSBTAP00000001080/1-975 ---------- ---------- ---------- ---------- ---------- ENSP00000351209/1-976 ---------- ---------- ---------- ---------- ---------- bmy_08225T0/1-859 ---------- ---------- ---------- ---------- ---------- BACU005682/1-1328 DLPSSRPPIV APDHVTGKDK QMDFCWDPWQ RCFQTTNGYL SDSRSCSSNY ENSTTRP00000016478/1-974 ---------- ---------- ---------- ---------- ---------- 1201 1250 ENSBTAP00000001080/1-975 ---------- ---------- ---------- ---------- ---------- ENSP00000351209/1-976 ---------- ---------- ---------- ---------- ---------- bmy_08225T0/1-859 ---------- ---------- ---------- ---------- ---------- BACU005682/1-1328 NVAALATSSL VGVVQSIKDH ITKPTAMARG RVAHLIEWKG WSAQRSGWEL ENSTTRP00000016478/1-974 ---------- ---------- ---------- ---------- ---------- 1251 1300 ENSBTAP00000001080/1-975 ---------- ---------- ---------- ---------- ---------- ENSP00000351209/1-976 ---------- ---------- ---------- ---------- ---------- bmy_08225T0/1-859 ---------- ---------- ---------- ---------- ---------- BACU005682/1-1328 SAAEDEHYCC LPDELREARF AAGVAEQFAI TEATLSAWSS LDDEELHPEN ENSTTRP00000016478/1-974 ---------- ---------- ---------- ---------- ---------- 1301 1350 ENSBTAP00000001080/1-975 ---------- ---------- ---------- ---------- ---------- ENSP00000351209/1-976 ---------- ---------- ---------- ---------- ---------- bmy_08225T0/1-859 ---------- ---------- ---------- ---------- ---------- BACU005682/1-1328 SPQDVIQLQD LESIYLQDSL LSVPSQDDSL LAFSSPDGWP SPGEPPTIAS ENSTTRP00000016478/1-974 ---------- ---------- ---------- ---------- ---------- 1351 1400 ENSBTAP00000001080/1-975 ---------- ---------- ---------- ---------- ---------- ENSP00000351209/1-976 ---------- ---------- ---------- ---------- ---------- bmy_08225T0/1-859 ---------- ---------- ---------- ---------- ---------- BACU005682/1-1328 GPQPPSPEQQ HQQRXXXXXX XXXXXXXXXX XXXXXPRGPS GGPACRVPSR ENSTTRP00000016478/1-974 ---------- ---------- ---------- ---------- ---------- 1401 1450 ENSBTAP00000001080/1-975 ---------- ---------- ---------- ---------- ------- ENSP00000351209/1-976 ---------- ---------- ---------- ---------- ------- bmy_08225T0/1-859 ---------- ---------- ---------- ---------- ------- BACU005682/1-1328 RWTAAPSQRR RQRCSITEAG ARACSHRDLA RWAAQVHQDA RVWLGIS ENSTTRP00000016478/1-974 ---------- ---------- ---------- ---------- -------