KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 5 Type: P Thu May 15 16:13:08 2014 Check: 00 ..
Name: ENSBTAP00000001080/1-975 Len: 1447 Check: 3646 Weight: 1.00
Name: ENSP00000351209/1-976 Len: 1447 Check: 616 Weight: 1.00
Name: bmy_08225T0/1-859 Len: 1447 Check: 1309 Weight: 1.00
Name: BACU005682/1-1328 Len: 1447 Check: 9274 Weight: 1.00
Name: ENSTTRP00000016478/1-974 Len: 1447 Check: 3076 Weight: 1.00
//
1 50
ENSBTAP00000001080/1-975 MGRRAPPACL ALLWGCALAA ASAAQGKEVV LLDFAAAKG- ----ELGWLT
ENSP00000351209/1-976 MELQAARACF ALLWGCALAA AAAAQGKEVV LLDFAAAGG- ----ELGWLT
bmy_08225T0/1-859 MERLAPRACL ALLWGCLLAA AAAAQGKEVG EESLRGVSGQ SVHAQPSLLP
BACU005682/1-1328 MERLAPRACL ALLWGCLLAA TAAAQGKEVV LLDFAAAKG- ----ELGWLT
ENSTTRP00000016478/1-974 MERLAPRACL ALLWGCLLAA AAAAQGKEVV LLDFAAAKG- ----ELGWLT
51 100
ENSBTAP00000001080/1-975 HPY------G KG-------- ---------- -------WDL LQNIMNDMPI
ENSP00000351209/1-976 HPY------G KG-------- ---------- -------WDL MQNIMNDMPI
bmy_08225T0/1-859 SPHSQVRGAG SGPRARTGSP KVKRSEQGVT QNEEMRQWDL MQNIMDDMPI
BACU005682/1-1328 HPY------G KG-------- ---------- -------WDL MQNIMDDMPI
ENSTTRP00000016478/1-974 HPY------G KG-------- ---------- -------WDL MQNIMDDMPI
101 150
ENSBTAP00000001080/1-975 YMYSVCNVVA GDQDNWLRTN WVYRGEAERI FIELKFTVRD CNSFPGGASS
ENSP00000351209/1-976 YMYSVCNVMS GDQDNWLRTN WVYRGEAERI FIELKFTVRD CNSFPGGASS
bmy_08225T0/1-859 YMYSVCNVVA GDQDNWLRTN WVYRGEAERI FIELKFTVRD CNSFPGGASS
BACU005682/1-1328 YMYSVCNVVA GDQDNWLRTN WVYRGEAERI FIELKFTVRD CNSFPGGASS
ENSTTRP00000016478/1-974 YMYSVCNVVA SDQDNWLRTN WVYRGEAERI FIELKFTVRD CNSFPGGASS
151 200
ENSBTAP00000001080/1-975 CKETFNLYYA ESDVDYGTNF QKRQFTKIDT IAPDEITGSS DFEARHVKLN
ENSP00000351209/1-976 CKETFNLYYA ESDLDYGTNF QKRLFTKIDT IAPDEITVSS DFEARHVKLN
bmy_08225T0/1-859 CKETFNLYYA ESDVDYGTNF QKRQFTKIDT IAPDEITVSS DFEARHVKLN
BACU005682/1-1328 CKETFNLYYA ESDLDYGTNF QKRQFTKIDT IAPDEITVSS DFEARHVKLN
ENSTTRP00000016478/1-974 CKETFNLYYA ESDVDYGTNF QKRQFTKIDT IAPDEITVSS DFEARHVKLN
201 250
ENSBTAP00000001080/1-975 VEERSVGPLT RKGFYLAFQD VGACVALLSV RVYYKKCPEL LKGLARFPET
ENSP00000351209/1-976 VEERSVGPLT RKGFYLAFQD IGACVALLSV RVYYKKCPEL LQGLAHFPET
bmy_08225T0/1-859 VEERSVGPLS RKGFYLAFQD IGACVALLSV RVYYKKCPEK LQGLAHFPET
BACU005682/1-1328 VEERSVGPLS RKGFYLAFQD IGACVALLSV RVYYKKCPEK LQGLAHFPET
ENSTTRP00000016478/1-974 VEERSVGPLS RKGFYLAFQD IGACVALLSV RVYYKKCPKL LKGLARFPET
251 300
ENSBTAP00000001080/1-975 IAGSDAPALA TVAGNCVEHA VVPPGGEEPR MHCAVDGEWL VPIGQCLCQA
ENSP00000351209/1-976 IAGSDAPSLA TVAGTCVDHA VVPPGGEEPR MHCAVDGEWL VPIGQCLCQA
bmy_08225T0/1-859 IAGSDAPSLA TVAGTCVDHA VVPPGGEEPR MHCAVDGEWL VPIGECLCQA
BACU005682/1-1328 IAGSDAPSLA TVAGTCVDHA VVPPGGEEPR MHCAVDGEWL VPIGECLCQA
ENSTTRP00000016478/1-974 IAGSDAPSLA IVDGTCLDHA VVPPGGEEPR MHCAVDGEWL VLIGQCLCEA
301 350
ENSBTAP00000001080/1-975 GYEKVEDACQ ACSPGFFKPE ASESPCLECP AHTLPSSEGA TACECEDGYF
ENSP00000351209/1-976 GYEKVEDACQ ACSPGFFKFE ASESPCLECP EHTLPSPEGA TSCECEEGFF
bmy_08225T0/1-859 GYEKVEDACQ G--------- ---------- ---------- ----------
BACU005682/1-1328 GYEKVEDACQ ACSPGFFKSE ASESPCLECP QHTLPSSEGA TACECEEGYF
ENSTTRP00000016478/1-974 GYEKVEDACQ ACSPGFFKSE ASESPCLECP PHTLPSSEGA TACECEEGYF
351 400
ENSBTAP00000001080/1-975 RAPQDPLSLP CTRPPSAPHY LTAVGMGAKV ELRWTPPQDS GGREDLTYSV
ENSP00000351209/1-976 RAPQDPASMP CTRPPSAPHY LTAVGMGAKV ELRWTPPQDS GGREDIVYSV
bmy_08225T0/1-859 ---------- ---PPSAPHY LTAVGMGAKV ELRWTPPQDN GGREDITYSV
BACU005682/1-1328 RAPQDPLSLP CTRPPSAPHY LTAVGMGAKV ELRWTPPQDN GGREDITYSV
ENSTTRP00000016478/1-974 RAPQDPLSLL CTRPPSAPHY LTAVGMGAKV ELRWTPPQDN GGREDITYTV
401 450
ENSBTAP00000001080/1-975 SCEQCWPESG ECGPCEASVR YSEPPLGLTR TSVTVSDLEP HMNYTFTVEA
ENSP00000351209/1-976 TCEQCWPESG ECGPCEASVR YSEPPHGLTR TSVTVSDLEP HMNYTFTVEA
bmy_08225T0/1-859 TCEQCWPESG ECGPCEASVS YSEPPHGLTR TSVTVSDLEP HMNYTFAVEA
BACU005682/1-1328 TCEQCWPESG ECGPCEASVS YSEPPHGLTR TSVTVSDLEP HMNYTFAVEA
ENSTTRP00000016478/1-974 TCEQCWPESG ECGPCEASVR YSEPPHGLTR TSVTVSDLEP HMNYTFTVEA
451 500
ENSBTAP00000001080/1-975 RNGVSGLVST RSFRTASVSI NQTEPPKVKL ESRSTTSLSI SWIIPPLQQS
ENSP00000351209/1-976 RNGVSGLVTS RSFRTASVSI NQTEPPKVRL EGRSTTSLSV SWSIPPPQQS
bmy_08225T0/1-859 RNGVSDLVTS RSFLTASVSI NQTEPPKVKL EDRSTTSLSV SWSIPPPQQS
BACU005682/1-1328 RNGVSDLVTS RSFLTASVSI NQTEPPKVKL EDRSTTSLSV SWSIPPPQQS
ENSTTRP00000016478/1-974 RNGVSDLVTS RSFLTASVSI NQTXPSKEKL ENRSNHSMSV SWSILP-QQS
501 550
ENSBTAP00000001080/1-975 RVWKYEVTYR KKGDSNSYNV RRTEGFSVTL DDLAPDTVYL VQVQALTQEG
ENSP00000351209/1-976 RVWKYEVTYR KKGDSNSYNV RRTEGFSVTL DDLAPDTTYL VQVQALTQEG
bmy_08225T0/1-859 RVWKYEVTYR KKEDSNSYNV RRTEGFSVTL DDLTPDTIYL VQVQALTQEG
BACU005682/1-1328 RVWKYEVTYR KKGDSNSYNV RRTEGFSVTL DDLAPDTIYL VQVQALTQEG
ENSTTRP00000016478/1-974 RVWKYEVTYR KKGDSNSYNV RRTEGFSVTL DDLAPDTIYL VQVQALTQEG
551 600
ENSBTAP00000001080/1-975 QGAGSKVHEF QTLSTGGSGN MAVVGGVAVG AVLLLVLAGI GFFIHRRRKS
ENSP00000351209/1-976 QGAGSKVHEF QTLSPEGSGN LAVIGGVAVG VVLLLVLAGV GFFIHRRRKN
bmy_08225T0/1-859 QGAGSKVHEF QTLSTEGSSN MAVIGGVAVG VVLLLVLAGI GFFIHRRRKR
BACU005682/1-1328 QGAGSKVHEF QTLSTEGSSN MAVIGGVAVG VVLLLVLAGI GFFIHRRRKS
ENSTTRP00000016478/1-974 QGAGSKVHEF QTLSVEGSSN MAVIGGLAVG VVLLLVLAGI GFFIHRRRKS
601 650
ENSBTAP00000001080/1-975 LRTRQSSEDV YFSKS----- ---------- ---------- ----------
ENSP00000351209/1-976 QRARQSPEDV YFSKS----- ---------- ---------- ----------
bmy_08225T0/1-859 LRTRQSSEDV YFSKSGEMQH RLHAWPAVPT GLPSSVVEMG AARALPGRPR
BACU005682/1-1328 LRTRQSSEDV YFSKS----- ---------- ---------- ----------
ENSTTRP00000016478/1-974 LRTRQSSEDV YFSKS----- ---------- ---------- ----------
651 700
ENSBTAP00000001080/1-975 ---------- ---------- ---------- ---------- -------EQL
ENSP00000351209/1-976 ---------- ---------- ---------- ---------- -------EQL
bmy_08225T0/1-859 AAQRAEPEAP EVSGLLPTPP PPPPRQPLVG TPPLAKLSMT LPFLPLPEQL
BACU005682/1-1328 ---------- ---------- ---------- ---------- -------EQL
ENSTTRP00000016478/1-974 ---------- ---------- ---------- ---------- -------EQL
701 750
ENSBTAP00000001080/1-975 KPLKTYVDPH TYEDPNQAVL KFTTEIHPSC VTRQKVIGAG EFGEVYKGTL
ENSP00000351209/1-976 KPLKTYVDPH TYEDPNQAVL KFTTEIHPSC VTRQKVIGAG EFGEVYKGML
bmy_08225T0/1-859 KPLKTYVDPH TYEDPNQAVL KFTTEIHPSC VTRQKVIGAD ----------
BACU005682/1-1328 KPLKTYVDPH TYEDPNQAVL KFTTEIHPSC VTRQKVIGAG EFGEVYKGTL
ENSTTRP00000016478/1-974 KPLKTYVDPH TYEDPNQAVL KFTTEIHPSS VTRQKVIGAG EFGEVYKGTL
751 800
ENSBTAP00000001080/1-975 KA-SGKKEVP VAIKTLKAGY TEKQRVDFLS EASIMGQFSH HNIIRLEGVV
ENSP00000351209/1-976 KTSSGKKEVP VAIKTLKAGY TEKQRVDFLG EAGIMGQFSH HNIIRLEGVI
bmy_08225T0/1-859 ---------- ---------- ---------- ---------- ----------
BACU005682/1-1328 KV-SGKKEVP VAIKTLKAGY TEKQRVDFLS EASIMGQFSH HNIIRLEGVV
ENSTTRP00000016478/1-974 KV-SVKKEVP VAIKTLKAGY TEKQRVDFLS EASIMGQFSH HNIIRLEGVV
801 850
ENSBTAP00000001080/1-975 SKYKPLMIIT EYMENGALDK FLREKDGEFS VLQLVGMLRG VAAGMKYLAN
ENSP00000351209/1-976 SKYKPMMIIT EYMENGALDK FLREKDGEFS VLQLVGMLRG IAAGMKYLAN
bmy_08225T0/1-859 ---KPMMIIT EYMENGALDK FLR------- ---------- ----------
BACU005682/1-1328 SKYKPMMIIT EYMENGALDK FLREKDGEFS VLQLVGMLRG IAAGMKYLAN
ENSTTRP00000016478/1-974 SKYKPMMIIA EYMENGALDK FLREKDGEFS VLQLVGMLRG IAAGMKYLAN
851 900
ENSBTAP00000001080/1-975 MSYVHRDLAA RNILVNSNLV CKVSDFGLSR VLEDDPEATY TTSGGKIPIR
ENSP00000351209/1-976 MNYVHRDLAA RNILVNSNLV CKVSDFGLSR VLEDDPEATY TTSGGKIPIR
bmy_08225T0/1-859 ---------- ---------- ---------- ---------- ----------
BACU005682/1-1328 MNYVHRDLAA RNILVNCNLV CKVSDFGLSR VLEDDPEATY TTSGGKIPIR
ENSTTRP00000016478/1-974 MNYVHRDLAA RNILVNSNLV CKVSDFGLSR VLEDDPEATY TTSGGKIPIR
901 950
ENSBTAP00000001080/1-975 WTAPEAISYR KFTSASDVWS YGIVMWEVMT YGERPYWELS NHEVMKAIND
ENSP00000351209/1-976 WTAPEAISYR KFTSASDVWS FGIVMWEVMT YGERPYWELS NHEVMKAIND
bmy_08225T0/1-859 ---------- ---------- ---------- ---------- ---VMKAIND
BACU005682/1-1328 WTAPEAISYR KFTSASDVWS YGIVMWEVMT YGERPYWELS NHEVMKAIND
ENSTTRP00000016478/1-974 WTAPEAISYR KFTSASDVWS YGIVMWEVMT YGERPYWELS NHEVMKAIND
951 1000
ENSBTAP00000001080/1-975 GFRLPTPMDC PSAIYQLMMQ CWQQERTRRP KFADIVSILD KLIRAPDSLK
ENSP00000351209/1-976 GFRLPTPMDC PSAIYQLMMQ CWQQERARRP KFADIVSILD KLIRAPDSLK
bmy_08225T0/1-859 GFRLPTPMDC PSAIYQLMMQ CWQQERARRP KFADIVSILD KLIRAPESLK
BACU005682/1-1328 GFRLPTPMDC PSAIYQLMMQ CWQQERARRP KFADIVSILD KLIRAPESLK
ENSTTRP00000016478/1-974 GFRLPTPMDC PSAIYQLMMQ CWQQERARRP KFADIVSILD KLIRAPESLK
1001 1050
ENSBTAP00000001080/1-975 TLADFDPRVS IRLPSTSGSE GVPFRTVSEW LESIKMQQYT EHFLVAGYTT
ENSP00000351209/1-976 TLADFDPRVS IRLPSTSGSE GVPFRTVSEW LESIKMQQYT EHFMAAGYTA
bmy_08225T0/1-859 TLADFDPRVS IRLPSTSGSE GVPFRTVSEW LESIKMQQYA EHFLAAGYTA
BACU005682/1-1328 TLADFDPRVS IRLPSTSGSE GVPFRTVSEW LESIKMQQYT EHFLAAGYTA
ENSTTRP00000016478/1-974 TLADFDPRVS IRLPSTSGSE GVPFRTVSEW LESIKMQQYT EHFMAAGYTA
1051 1100
ENSBTAP00000001080/1-975 IEKVVQMTND DIKRIGVRLP GHQKRIAYSL LGLKDQV--- -NTVGVPI--
ENSP00000351209/1-976 IEKVVQMTND DIKRIGVRLP GHQKRIAYSL LGLKDQV--- -NTVGIPI--
bmy_08225T0/1-859 IEKVVQMTND DIKRIGVRLP GHQKRIAYSL LGLKDQV--- -NTVGIPI--
BACU005682/1-1328 IEKVVQMTND DIKRIGVRLP GHQKRIAYSL LGLKDQIPAA AHTVASPLAS
ENSTTRP00000016478/1-974 IEKVVQMTND DIKRIGVRLP GHQKRIAYSL LGLKDQV--- -NTVGIPI--
1101 1150
ENSBTAP00000001080/1-975 ---------- ---------- ---------- ---------- ----------
ENSP00000351209/1-976 ---------- ---------- ---------- ---------- ----------
bmy_08225T0/1-859 ---------- ---------- ---------- ---------- ----------
BACU005682/1-1328 HPPVWPFQQL HLTTTHLCAE SFSGSTVLPD LLTSTHKDCP VPQGTAPLNP
ENSTTRP00000016478/1-974 ---------- ---------- ---------- ---------- ----------
1151 1200
ENSBTAP00000001080/1-975 ---------- ---------- ---------- ---------- ----------
ENSP00000351209/1-976 ---------- ---------- ---------- ---------- ----------
bmy_08225T0/1-859 ---------- ---------- ---------- ---------- ----------
BACU005682/1-1328 DLPSSRPPIV APDHVTGKDK QMDFCWDPWQ RCFQTTNGYL SDSRSCSSNY
ENSTTRP00000016478/1-974 ---------- ---------- ---------- ---------- ----------
1201 1250
ENSBTAP00000001080/1-975 ---------- ---------- ---------- ---------- ----------
ENSP00000351209/1-976 ---------- ---------- ---------- ---------- ----------
bmy_08225T0/1-859 ---------- ---------- ---------- ---------- ----------
BACU005682/1-1328 NVAALATSSL VGVVQSIKDH ITKPTAMARG RVAHLIEWKG WSAQRSGWEL
ENSTTRP00000016478/1-974 ---------- ---------- ---------- ---------- ----------
1251 1300
ENSBTAP00000001080/1-975 ---------- ---------- ---------- ---------- ----------
ENSP00000351209/1-976 ---------- ---------- ---------- ---------- ----------
bmy_08225T0/1-859 ---------- ---------- ---------- ---------- ----------
BACU005682/1-1328 SAAEDEHYCC LPDELREARF AAGVAEQFAI TEATLSAWSS LDDEELHPEN
ENSTTRP00000016478/1-974 ---------- ---------- ---------- ---------- ----------
1301 1350
ENSBTAP00000001080/1-975 ---------- ---------- ---------- ---------- ----------
ENSP00000351209/1-976 ---------- ---------- ---------- ---------- ----------
bmy_08225T0/1-859 ---------- ---------- ---------- ---------- ----------
BACU005682/1-1328 SPQDVIQLQD LESIYLQDSL LSVPSQDDSL LAFSSPDGWP SPGEPPTIAS
ENSTTRP00000016478/1-974 ---------- ---------- ---------- ---------- ----------
1351 1400
ENSBTAP00000001080/1-975 ---------- ---------- ---------- ---------- ----------
ENSP00000351209/1-976 ---------- ---------- ---------- ---------- ----------
bmy_08225T0/1-859 ---------- ---------- ---------- ---------- ----------
BACU005682/1-1328 GPQPPSPEQQ HQQRXXXXXX XXXXXXXXXX XXXXXPRGPS GGPACRVPSR
ENSTTRP00000016478/1-974 ---------- ---------- ---------- ---------- ----------
1401 1450
ENSBTAP00000001080/1-975 ---------- ---------- ---------- ---------- -------
ENSP00000351209/1-976 ---------- ---------- ---------- ---------- -------
bmy_08225T0/1-859 ---------- ---------- ---------- ---------- -------
BACU005682/1-1328 RWTAAPSQRR RQRCSITEAG ARACSHRDLA RWAAQVHQDA RVWLGIS
ENSTTRP00000016478/1-974 ---------- ---------- ---------- ---------- -------