KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:13:09 2014 Check: 00 .. Name: ENSP00000358092/1-825 Len: 831 Check: 2072 Weight: 1.00 Name: ENSBTAP00000001081/1-828 Len: 831 Check: 2324 Weight: 1.00 Name: ENSTTRP00000012228/1-787 Len: 831 Check: 5829 Weight: 1.00 Name: bmy_04944T0/1-820 Len: 831 Check: 4619 Weight: 1.00 Name: BACU020016/1-644 Len: 831 Check: 8663 Weight: 1.00 // 1 50 ENSP00000358092/1-825 MLDICLEKRV GTTLAAPKCN SSTVRFQGLA EGTKGTMKMD MEDADMTLWT ENSBTAP00000001081/1-828 MLDICLEKRV GTTLAAPKCS SSAVKVPGLA EGTEGTMKMD MEDADMTLWT ENSTTRP00000012228/1-787 ---------- ---------- ---------- ------MKMD MENADMTLWT bmy_04944T0/1-820 ---MGIKGLS FLFQAAPKCN SSAVKVPGLA EGTEGTMKMD MEDADMTLWT BACU020016/1-644 ---------- ---------- ---------- ------MKMD MEDADMTLWT 51 100 ENSP00000358092/1-825 EAEFEEKCTY IVNDHPWDSG ADGGTSVQAE ASLPRNLLFK YATNSEEVIG ENSBTAP00000001081/1-828 EAEFEEKCTY IVNDHPWDSG VEGGTSVQAE ASLPRNLLFK YATNSKEITG ENSTTRP00000012228/1-787 EAEFEEKCTY IVNDHPWDSG TEGGTSVQAE ASLPRNLLFK YATNSKEVIG bmy_04944T0/1-820 EAEFEEKCTY IVNDHPWDSG TEGGTSVQAE ASLPRNLLFK YATNSKEVIG BACU020016/1-644 EAEFEEKCTY IVNDHPWDSG TEGGASVQAE ASLPRNLLFK YAANSKEVIG 101 150 ENSP00000358092/1-825 VMSKEYIPKG TRFGPLIGEI YTNDTVPKNA NRKYFWRIYS RGELHHFIDG ENSBTAP00000001081/1-828 VVSKEYIPKG TRFGPLIGEI YTSDAVPKNA NRKYFWRIYS RGELHHFIDG ENSTTRP00000012228/1-787 VVSKEYIPKG TRFGPLIGEI YTSDTVPKNA NRKYFWRXXX XXXXXXXXXX bmy_04944T0/1-820 VVSKEYIPKG TRFGPLIGEI YTNDTVPKNA NRKYFWRIYS RGELHHFIDG BACU020016/1-644 VVSKEYIPKG TRFGPLIGEI YTNDTVPKNA NRKYFWRIYS RGELHHFIDG 151 200 ENSP00000358092/1-825 FNEEKSNWMR YVNPAHSPRE QNLAACQNGM NIYFYTIKPI PANQELLVWY ENSBTAP00000001081/1-828 FNEEKSNWLR YVNPAHTARE QNLAACQNGM NIYFYTIKPI PANQELLVWY ENSTTRP00000012228/1-787 XXXXXSNWLR YVNPAHSARE QNLAACQNGM NIYFYTIKPI PAIQELLVWY bmy_04944T0/1-820 FNEEKSNWLR YVNPAHSARE QNLAACQNGM NIYFYTIKPI PANQELLVWY BACU020016/1-644 FNEEKSNWLR YVNPAHSARE QNLAACQNGM NIYFYTIKPI PANQELLVWY 201 250 ENSP00000358092/1-825 CRDFAERLHY PYPGELTMMN LTQTQSSLKQ PSTEKNELCP KNVPKREYSV ENSBTAP00000001081/1-828 CRDFAERLHY PYSGELTMMN LTQTQSRPKQ QSTEKHELCP KSVPKREYSV ENSTTRP00000012228/1-787 CRDFAERLHY PYPGELTMMN LTQTQSHPKQ QSTEKHELCP KNVPKREYSV bmy_04944T0/1-820 CRDFAERLHY PYPGELTMMN LTQTQSHPKQ QSTEKHELCP KNVPKREYSV BACU020016/1-644 CRDFAERLHY PYPGELTMMN LTQTQSHPKQ QSTEKHELCP KNVPKREYSV 251 300 ENSP00000358092/1-825 KEILKLDSNP SKGKDLYRSN ISPLTSEKDL DDFRRRGSPE MPFYPRVVYP ENSBTAP00000001081/1-828 KEILKLDSHP SKGKDLYRSN ISPLTSEKDA EDFRKNGSPE MPFYPRVVYP ENSTTRP00000012228/1-787 KEILKLDSHP SKGKDLYRSN ISPLTSEKDA DDFRKNGSPE MPFYPRVVYP bmy_04944T0/1-820 KEILKLDSHP SKGKDFYRSN ISPLTSEKDA DDFRKNGSPE MPFYPRVVYP BACU020016/1-644 KEILKLDSHP SKGKDFYRSN VSPLTSEKDA DDFRKNGSPE MPFYPRVVYP 301 350 ENSP00000358092/1-825 IRAPLPEDFL KASL-AYGIE RPTYITRSPI PSSTTPSPSA RSSPDQSLKS ENSBTAP00000001081/1-828 IRAPLPEDFL KAPLGCYGME RPPYITHSPI SSSTTPSPSA RSSPDRSLQS ENSTTRP00000012228/1-787 IRAPLPEDFL KASL-AYGME RPPYIAHSPI PSSTTPSPSA RSSPDRSL-- bmy_04944T0/1-820 IRAPLPEDFL KASL-AYGME RPPYIAHSPI PSSTTPSPSA RSSPDRSL-- BACU020016/1-644 IRAPLPEDFL KASL-AYGME RPPYIAHSPI PSSTTPSPSA RSSPDRSL-- 351 400 ENSP00000358092/1-825 SSPHSSPGNT VSPVGPGSQE HRDSYAYLNA SY---GTEGL GSYPGYAPLP ENSBTAP00000001081/1-828 CSPHSSPGNT VSPRAPGPQE ARDSYAYLNA PY-GAAAEGL GSLAGYGPPT ENSTTRP00000012228/1-787 ---HSSPGNT VSPRAPGSQE HRDPYAYLNA PYAAAAAEGL GSYPGYAPPP bmy_04944T0/1-820 ---HGSPGNT VSPRAPGSQE HRDPYAYLNA PYAAAAAEGL GPYPGYAPPP BACU020016/1-644 ---HGSPGNT VSPRAPGSQE HRDPYAYLNA P--------- ---------- 401 450 ENSP00000358092/1-825 HLPPAFIPSY NAHYPKFLLP PYGMNCNGLS -AVSSMNGIN NFGLFPRLCP ENSBTAP00000001081/1-828 HLPPAFIPSY NAHYPKFLLP PYGMNCNGLG AAVSNINGLN SFGLFPRLYP ENSTTRP00000012228/1-787 HLPPAFIPSY NAHYPKFLLP PYGMNCNGLG -AVGNINGLG SFGLFPRLYP bmy_04944T0/1-820 HLPPAFIPSY NAHYPKFLLP PYGMNCNGLG -AVGNINGLG SFGLFPRLYP BACU020016/1-644 ---------- ---------- ---------- ---------- ---------- 451 500 ENSP00000358092/1-825 VYSNLLGGGS LPHPMLNPTS LPSSLPSDGA RRLLQPEHPR EVLVPAPHSA ENSBTAP00000001081/1-828 VYSSLLGGGG LPPPVLASAS LPSSLPSEGA RRLLQPEHPR EVLVPAPHSA ENSTTRP00000012228/1-787 VYGGLLGGGG LPPPMLAPAS LPSSLPSEGA RRLLQPEHPR EVLVPAPHSA bmy_04944T0/1-820 VYGGLLGGGG LPPPMLAPAS LPSSLPSEGA RRLLQPEHPR EVLVPAPHSA BACU020016/1-644 ---------- ---------- ---------- ---------- ---------- 501 550 ENSP00000358092/1-825 FSFTGAAASM KDKACSPTSG SPTAGTAATA EHVVQPKATS AAMAAP-SSD ENSBTAP00000001081/1-828 FSLPGAAASL KDKACTPTSG SPTAGTAATA EHVVQPKATS AAAAAP-GGE ENSTTRP00000012228/1-787 FSLPGAAASL KDKACSPTSG SPTAGTAATA EHVVQPKATS AAAAAPGGGD bmy_04944T0/1-820 FSLPGAAASL KDKACSPTSG SPTAGTAATA EHVVQPKATS AAAAAPGGGD BACU020016/1-644 ---------- ---------- -----TAATA EHVVQPKATS AAAAARGGGD 551 600 ENSP00000358092/1-825 EAMNLIKNKR NMTGYKTLPY PLKKQNGKIK YECNVCAKTF GQLSNLKVHL ENSBTAP00000001081/1-828 EAVNLIKNKR NMTGYKTLPY PLKKQNGKIK YECNVCAKTF GQLSNLKVHL ENSTTRP00000012228/1-787 EAVNLIKNKR NMTGYKTLPY PLKKQNGKIK YECNVCAKTF GQLSNLKVHL bmy_04944T0/1-820 EAVNLIKNKR NMTGYKTLPY PLKKQNGKIK YECNVCAKTF GQLSNLKVHL BACU020016/1-644 EAVNLIKNKR NMTGYKTLPY PLKKQNGKIK YECNVCAKTF GQLSNLKVHL 601 650 ENSP00000358092/1-825 RVHSGERPFK CQTCNKGFTQ LAHLQKHYLV HTGEKPHECQ VCHKRFSSTS ENSBTAP00000001081/1-828 RVHSGERPFK CQTCNKGFTQ LAHLQKHYLV HTGEKPHECQ VCHKRFSSTS ENSTTRP00000012228/1-787 RVHSGERPFK CQTCNKGFTQ LAHLQKHYLV HTGEKPHECQ VCHKRFSSTS bmy_04944T0/1-820 RVHSGERPFK CQTCNKGFTQ LAHLQKHYLV HTGEKPHECQ VCHKRFSSTS BACU020016/1-644 RVHSGERPFK CQTCNKGFTQ LAHLQKHYLV HTGEKPHECQ VCHKRFSSTS 651 700 ENSP00000358092/1-825 NLKTHLRLHS GEKPYQCKVC PAKFTQFVHL KLHKRLHTRE RPHKCSQCHK ENSBTAP00000001081/1-828 NLKTHLRLHS GEKPYQCKVC PAKFTQFVHL KLHKRLHTRE RPHKCAHCHK ENSTTRP00000012228/1-787 NLKTHLRLHS GEKPYQCKVC PAKFTQFVHL KLHKRLHTRE RPHKCAHCHK bmy_04944T0/1-820 NLKTHLRLHS GEKPYQCKVC PAKFTQFVHL KLHKRLHTRE RPHKCAHCHK BACU020016/1-644 NLKTHLRLHS GEKPYQCKVC PAKFTQFVHL KLHKRLHTRE RPHKCAHCHK 701 750 ENSP00000358092/1-825 NYIHLCSLKV HLKGNCAAAP APGLPLEDLT RINEEIEKFD ISDNADRLED ENSBTAP00000001081/1-828 SYIHFCSLKV HLKGHCPVAP ATGLPLEDLA RINEEIEKFD ISDNADRLED ENSTTRP00000012228/1-787 SYIHLCSLKV HLKGYCPVAP ATGLPLEDLT RINEEIEKFD ISDNADRLED bmy_04944T0/1-820 SYIHLCSLKV HLKGYCPVAP ATGLPLEDLT RINEEIEKFD ISDNADRLED BACU020016/1-644 SYIHLCSLKV HLKGYCPVAP ATGLPLEDLT RINEEIEKFD ISDNADRLED 751 800 ENSP00000358092/1-825 VEDDISVISV VEKEILAVVR KEKEETGLKV SLQRNMGNGL LSSGCSLYES ENSBTAP00000001081/1-828 MEDNIDMTSV VENEILAVVR KEKEETGLKA SLQRNLGNGL L-SGYNLYES ENSTTRP00000012228/1-787 MEDNVDVTSV VEKEILAVVR KEKEETGLKV SLQRNMGNGL L-SGCSLYES bmy_04944T0/1-820 MEDNVDVTSV VEKEILAVVR KEKEETGLKV SLQRNMGNGL L-SGCNLYES BACU020016/1-644 MEDNVDVTSV VEKEILAVVR KEKEETGLKV SLQRNMGNGL L-SGCSLYES 801 850 ENSP00000358092/1-825 SDLPLMKLPP SNPLPLVPVK VKQETVEPMD P ENSBTAP00000001081/1-828 TEPSLLKLPH SNPLPLGPVK VKEETVEPMD P ENSTTRP00000012228/1-787 TDPSLLKLPH SNPLPLGPVK VKQETVEPMD P bmy_04944T0/1-820 TDPSLLKLPH SNPLPLGPVK VKQETIEPMD P BACU020016/1-644 TDPSLLKLPH SNPLPLGPVK VKQETIEPMD P