KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:13:10 2014 Check: 00 .. Name: bmy_04839T0/1-952 Len: 1025 Check: 965 Weight: 1.00 Name: ENSTTRP00000003484/1-675 Len: 1025 Check: 8185 Weight: 1.00 Name: ENSP00000371434/1-749 Len: 1025 Check: 6543 Weight: 1.00 Name: BACU009463/1-677 Len: 1025 Check: 786 Weight: 1.00 Name: ENSBTAP00000001085/1-713 Len: 1025 Check: 6738 Weight: 1.00 // 1 50 bmy_04839T0/1-952 MATQAYVTEL QAAPQPSQPP QAPPQAQPQP PPPPPSAAPQ PPQPPATTAT ENSTTRP00000003484/1-675 ---------- ---------- ---------- ---------- ---------- ENSP00000371434/1-749 ---------- ---------- ---------- ---------- ---------- BACU009463/1-677 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000001085/1-713 ---------- ---------- ---------- ---------- ---------- 51 100 bmy_04839T0/1-952 PQPQYVTELQ SPQPQAQPPG GQKQYVTELP AAPTPSQPAG TPAPSPASQQ ENSTTRP00000003484/1-675 ---------- ---------- ---------- ---MQTSETG SDTGSTVTLQ ENSP00000371434/1-749 ---------- ---------- ---------- ---MQTSETG SDTGSTVTLQ BACU009463/1-677 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000001085/1-713 ---------- ---------- ---------- ---------- ---------- 101 150 bmy_04839T0/1-952 YIVVTVSEGA MRASETVSEA SPGSTASQTG VPTQVVQQVQ GTQQRLLVQT ENSTTRP00000003484/1-675 ---------- ---------- --TSVASQAA VPTQVVQQVP VQQQ------ ENSP00000371434/1-749 ---------- ---------- --TSVASQAA VPTQVVQQVP VQQQ------ BACU009463/1-677 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000001085/1-713 ---------- ---------- ---------- ---------- ---Q------ 151 200 bmy_04839T0/1-952 SVQAKPGHVS PLQLTNIPVP QQRLVVQSTV PGGKSGQVSL TVHGTQQVHS ENSTTRP00000003484/1-675 ---------- ---------- ---------- ---------- ---------- ENSP00000371434/1-749 ---------- ---------- ---------- ---------- ---------- BACU009463/1-677 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000001085/1-713 ---------- ---------- ---------- ---------- ---------- 201 250 bmy_04839T0/1-952 PPERSPVQAN SSSSKTAGAP TGTVPQQLQV HGVQQSVPVT QERSVVQATP ENSTTRP00000003484/1-675 ---------- ---------- ---------- ---------- ---------- ENSP00000371434/1-749 ---------- ---------- ---------- ---------- ---------- BACU009463/1-677 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000001085/1-713 ---------- ---------- ---------- ---------- ---------- 251 300 bmy_04839T0/1-952 QVPKAGPVQQ LTVQGLQPVH VAQEVQQLQQ VPVPHVYSSQ VQYVEGSDAS ENSTTRP00000003484/1-675 ---------- ---------- -VQQVQIMQQ --VQHVYPAQ VQYVEGSDTV ENSP00000371434/1-749 ---------- ---------- -VQQVQTVQQ --VQHVYPAQ VQYVEGSDTV BACU009463/1-677 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000001085/1-713 ---------- ---------- -VQQVQTVQQ --VQHVYPAQ VQYVEGSDTV 301 350 bmy_04839T0/1-952 YTASAIRSST YPYPETPLYT QTAGTSYYEA AGTAAQVSTP ATSQAVASSG ENSTTRP00000003484/1-675 YTNGAIRTTT YPYTETQMYS QNTGGNYFDT QGSSAQVTTV VSSHSMVGTG ENSP00000371434/1-749 YTNGAIRTTT YPYTETQMYS QNTGGNYFDT QGSSAQVTTV VSSHSMVGTG BACU009463/1-677 ------RTTT YPYTETQMYS QNTGGNYFDT QGSSAQVTTV VSSHSMVGTG ENSBTAP00000001085/1-713 YTNGAIRTTT YPYTETQMYS QNTGGNYFDT QGSSAQVTTV VSSHSMVGTG 351 400 bmy_04839T0/1-952 SVPMYVSGSQ VVASSTSSGS GASNSSGGGS GGGGGGGGGG GSGSSSGSGA ENSTTRP00000003484/1-675 GIQMGVTGGQ LISSS----- ---------- ---------- ---------G ENSP00000371434/1-749 GIQMGVTGGQ LISSS----- ---------- ---------- ---------G BACU009463/1-677 GIQMGVTGGQ LISSS----- ---------- ---------- ---------G ENSBTAP00000001085/1-713 GIQMGVTGGQ LISSS----- ---------- ---------- ---------G 401 450 bmy_04839T0/1-952 GTYVIQGGYM LGSASQSYSH TTRASPATV- ---------- ---------- ENSTTRP00000003484/1-675 GTYLI--GNS MENSGHSVTH TTRASPATIE MAIETLQKSD GLSTHRSSLL ENSP00000371434/1-749 GTYLI--GNS MENSGHSVTH TTRASPATIE MAIETLQKSD GLSTHRSSLL BACU009463/1-677 GTYLI--GNS MENSGHSVTH TTRASPATIE MAIETLQKSD GLSTHRSSLL ENSBTAP00000001085/1-713 GTYLI--GNS MENSGHSVTH TTRASPATIE MAIETLQKSD GLSTHRSSLL 451 500 bmy_04839T0/1-952 ----QWLLDN YETAEGVSLP RSTLYCHYLL HCQEQKLEPV NAASFGKLIR ENSTTRP00000003484/1-675 NSHLQWLLDN YETAEGVSLP RSTLYNHYLR HCQEHKLDPV NAASFGKLIK ENSP00000371434/1-749 NSHLQWLLDN YETAEGVSLP RSTLYNHYLR HCQEHKLDPV NAASFGKLIR BACU009463/1-677 NSHLQWLLDN YETAEGVSLP RSTLYNHYLR HCQEHKLDPV NAASFGKLIR ENSBTAP00000001085/1-713 NSHLQWLLDN YETAEGVSLP RSTLYNHYLR HCQEHKLDPV NAASFGKLIR 501 550 bmy_04839T0/1-952 S--------- --------YH YYGLRIKASS PLLRLMEDQQ HMAMRGQPFS ENSTTRP00000003484/1-675 SIFMGLRTRR LGTRGNSKYH YYGIRVKPDS PLNRLQEDMQ YMAMRQQPMQ ENSP00000371434/1-749 SIFMGLRTRR LGTRGNSKYH YYGIRVKPDS PLNRLQEDMQ YMAMRQQPMQ BACU009463/1-677 SIFMGLRTRR LGTRGNSKYH YYGIRVKPDS PLNRLQEDMQ YMAMRQQPMQ ENSBTAP00000001085/1-713 SIFMGLRTRR LGTRGNSKYH YYGIRVKPDS PLNRLQEDMQ YMAMRQQPMQ 551 600 bmy_04839T0/1-952 QKQRLKPIQK MEGMTNGVAV GPQQATGLS- --DISAQVQQ YQQFLDASRS ENSTTRP00000003484/1-675 QKQXXXXXXX XXXXXXXXX- XXXXXXXXXX XXXXXXXXXX XXXXXXASRA ENSP00000371434/1-749 QKQRYKPMQK VDGVADGFT- GSGQQTGTSV EQTVIAQSQH HQQFLDASRA BACU009463/1-677 QKQRYKPMQK VDGVADGFT- GSGQQTGTSV EQTVIAQSQH HQQFLDASRA ENSBTAP00000001085/1-713 QKQRYKPMQK VDGVADGFT- GSGQQTGTSV EQTVIAQSQH HQQFLDASRA 601 650 bmy_04839T0/1-952 LPDFSELDLQ GKVLPEGIGP GDIKAFQVLY REHCEAIVDV MVNLQFTLVE ENSTTRP00000003484/1-675 LPEFGEVEIS S--LPDGTTF EDIKSLQSLY REHCEAILDV VVNLQFSLIE ENSP00000371434/1-749 LPEFGEVEIS S--LPDGTTF EDIKSLQSLY REHCEAILDV VVNLQFSLIE BACU009463/1-677 LPEFGEVEIS S--LPDGTTF EDIKSLQSLY REHCEAILDV VVNLQFSLIE ENSBTAP00000001085/1-713 LPEFGEVEIS S--LPDGTTF EDIKSLQSLY REHCEAILDV VVNLQFSLIE 651 700 bmy_04839T0/1-952 TLWKTFWRYN LSQPSEAPPL AVH---DEAE KRLPKASLVL LSKFEPVLQW ENSTTRP00000003484/1-675 KLWQTFWRYS PSTPADGTTI TESSNLSEIE SRLPKAKLIT LCKHESILKW ENSP00000371434/1-749 KLWQTFWRYS PSTPTDGTTI TESSNLSEIE SRLPKAKLIT LCKHESILKW BACU009463/1-677 KLWQTFWRYS PSTPTDGTTI TESSNLSEIE SRLPKAKLIT LCKHESILKW ENSBTAP00000001085/1-713 KLWQTFWRYS PSTPADGTTI TESSNLSEIE SRLPKAKLIT LCKHESILKW 701 750 bmy_04839T0/1-952 TKHCDNVLYQ GLVEILIPDV LRPIPSALTQ AIRNFAKSLE SWLTHAMVNI ENSTTRP00000003484/1-675 MCNCDHGMYH ALVEILIPDV LRPIPXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000371434/1-749 MCNCDHGMYQ ALVEILIPDV LRPIPSALTQ AIRNFAKSLE GWLSNAMNNI BACU009463/1-677 MCNCDHGMYQ ALVEILIPDV LRPIPSALTQ AIRNFAKSLE GWLSNAMNNI ENSBTAP00000001085/1-713 MCNCDHGMYQ ALVEILIPDV LRPIPSALTQ AIRNFAKSLE GWLSNAMNNI 751 800 bmy_04839T0/1-952 PEEMLRVKVA AAGAFAQTLR RYTSLNHLAQ AARAVLQNTA QISQMLSDLN ENSTTRP00000003484/1-675 XXXXXXXXVA AVSAFAQTLR RYTSLNHLAQ AARAVLQNTS QINQMLNDLN ENSP00000371434/1-749 PQRMIQTKVA AVSAFAQTLR RYTSLNHLAQ AARAVLQNTS QINQMLSDLN BACU009463/1-677 PQRMIQTKVA AVSAFAQTLR RYTSLNHLAQ AARAVLQNTS QINQMLNDLN ENSBTAP00000001085/1-713 PQRMIQTKVA AVSAFAQTLR RYTSLNHLAQ AARAVLQNTS QINQMLNDLN 801 850 bmy_04839T0/1-952 RVDFANVQEQ ASWVCRCEDR VVQRLEQDFK VTLQQQNSLE QWAAWLDGVV ENSTTRP00000003484/1-675 RVDFANVQEQ ASWVCQCDDN MVQRLETDFK MTLQQQSTLE QWAAWLDNVM ENSP00000371434/1-749 RVDFANVQEQ ASWVCQCDDN MVQRLETDFK MTLQQQSTLE QWAAWLDNVM BACU009463/1-677 RVDFANVQEQ ASWVCQCDDN MVQRLETDFK MTLQQQSTLE QWAAWLDNVM ENSBTAP00000001085/1-713 RVDFANVQEQ ASWVCQCDDN MVQRLETDFK MTLQQQSTLE QWAAWLDNVM 851 900 bmy_04839T0/1-952 SQVLKPYQGS AGFPKAAKLF LLKWSFY--S SMVIRDLTLR SAASFGSFHL ENSTTRP00000003484/1-675 MQALKPYEGR PSFPKAARQF LLKWSFY--S SMVIRDLTLR SAASFGSFHL ENSP00000371434/1-749 MQALKPYEGR PSFPKAARQF LLKWSFY--S SMVIRDLTLR SAASFGSFHL BACU009463/1-677 MQALKPYEGR PSFPKAARQF LLKWSFY--S SMVIRDLTLR SAASFGSFHL ENSBTAP00000001085/1-713 MQALKPYEGR PSFPKAARQF LLKWSFYRNS SMVIRDLTLR SAASFGSFHL 901 950 bmy_04839T0/1-952 IRLLYDEYMY YLIEHRVAQA KGETPIAVMG EFANLATSLN PLDPDKDEEE ENSTTRP00000003484/1-675 IRLLYNEYMF YLVEHRVAQA TGKTPIAVMG EFGDL-NAVS PGNLDKDDSE ENSP00000371434/1-749 IRLLYDEYMF YLVEHRVAQA TGETPIAVMG EFGDL-NAVS PGNLDKDEGS BACU009463/1-677 IRLLYDEYMF YLVEHRVAQA TGETPIAVMG EFGDL-NAVS PGNLDKDEGS ENSBTAP00000001085/1-713 IRLLYDEYMF YLVEHRVAQA TGETPIAVMG EFGDL-NAVS PGNLDKDEGS 951 1000 bmy_04839T0/1-952 EEEEESEDEL PQDISLAAGG ESPALG---- ---------- ---PEALEPP ENSTTRP00000003484/1-675 V--------- ---------- ---------- ---------- ---------- ENSP00000371434/1-749 EVESEMDEEL DDSSEPQAKR EKTELSQAFP VGCMQPVLET GVQPSLLNPI BACU009463/1-677 EVESEMDEEL DDSSEPQAKR EKTELNQAFP VGCMQPVLES GVQPSLLNPI ENSBTAP00000001085/1-713 EVESEMDEEL DDSSEPQAKR EKTELNQAFP VGCMQPVLES GVQPSLLNPI 1001 1050 bmy_04839T0/1-952 AKLARTDARG LFVQALPSS- ----- ENSTTRP00000003484/1-675 ---------- ---------- ----- ENSP00000371434/1-749 HSEHIVTSTQ TIRQCSATGN TYTAV BACU009463/1-677 HSEHIVTSTQ TIRQCSATGN TYTAV ENSBTAP00000001085/1-713 HSEHIVTSTQ TIRQCSATGN TYTAV