KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:13:13 2014 Check: 00 .. Name: ENSP00000225519/1-478 Len: 522 Check: 5935 Weight: 1.00 Name: ENSBTAP00000001095/1-478 Len: 522 Check: 9799 Weight: 1.00 Name: bmy_00201T0/1-485 Len: 522 Check: 3997 Weight: 1.00 Name: BACU006957/1-478 Len: 522 Check: 1025 Weight: 1.00 Name: ENSTTRP00000001130/1-478 Len: 522 Check: 601 Weight: 1.00 // 1 50 ENSP00000225519/1-478 ---------- ---------- ---------- ---------- ---MAARPIT ENSBTAP00000001095/1-478 ---------- ---------- ---------- ---------- ---MAARSVT bmy_00201T0/1-485 MGRREFVVLR VAGKIGRRGP ASAPLSRLKC AGRGAPAPDS IAVMAARSVT BACU006957/1-478 ---------- ---------- ---------- ---------- ---MAARSVT ENSTTRP00000001130/1-478 ---------- ---------- ---------- ---------- ---MAARSVT 51 100 ENSP00000225519/1-478 LGIDLGTTSV KAALLRAAPD DPSGFAVLAS CARAARAEAA VESAVAGPQG ENSBTAP00000001095/1-478 LGIDLGTTSV KAALVEAALG DPSGFVVLAS CARAAQAETA AQSAAAGPQG bmy_00201T0/1-485 LGIDLGTTSV KAALVEAARG DPSGFVVLAS CARPARAETA AQSAAAGPQ- BACU006957/1-478 LGIDLGTTSV KAALVEAARG DPSGFVVLAS CARPARAETA AQSAAAGPQG ENSTTRP00000001130/1-478 LGIDLGTTSV KAALVEAARG DPSGFVVLAS CARPARAETA AQSAAAGPQG 101 150 ENSP00000225519/1-478 REQDVSRILQ ALHECLAALP RPQLRSVVGI GVSGQMHGVV FWKTGQGCEW ENSBTAP00000001095/1-478 QEQDVKRIIQ ALHECLAALP RQQLRKVCGI GVSGQMHGVM FWKTGQGCAW bmy_00201T0/1-485 ------RISD SD-------- ---------- ---------- --SPGPSCEW BACU006957/1-478 QEQDVRRIIQ ALHECLAALP RQQLCKVCGI GVSGQMHGVM FWKTGQGCEW ENSTTRP00000001130/1-478 QEQDVRRIIQ ALHECLAALP RQQLCKVCGI GVSGQMHGVM FWKTGQGCEW 151 200 ENSP00000225519/1-478 TEGGITPVFE PRAVSHLVTW QDGRCSSEFL ASLPQPKSHL SVATGFGCAT ENSBTAP00000001095/1-478 TEGGAAPVFE PRAVSHLVTW QDGRCSSEFL ASLPQPESHL SVATGFGCAT bmy_00201T0/1-485 TKAGAAPVFE PRAVSHLVTW QDGRCGSKFL ASLPQPESHL SVATGFGCAT BACU006957/1-478 TKAGAAPVFE PRAVSHLVTW QDGRCGSKFL ASLPRPESHL SVATGFGCAT ENSTTRP00000001130/1-478 TEAGAAPVFE PRAVSHLVTW QDGRCGSKFL ASLPRPESHL SVATGFGCAT 201 250 ENSP00000225519/1-478 IFWLLKYRPE FLKSYDAAGT IHDYVVAMLC GLPRPLMSDQ NAASWGYFNT ENSBTAP00000001095/1-478 IFWLLKNSPE FLKSYDTAGT IHDYVVAMLC GLARPLMSDQ NAASWGYFNT bmy_00201T0/1-485 IFWLLKNSPE FLKSYDAAGT IHDYVVAMLC GLTRPLMSDQ NAASWGYFNT BACU006957/1-478 IFWLLKNSPE FLKSYDAAGT IQDYVVAMLC GLTRPLMSDQ NAASWGYFNT ENSTTRP00000001130/1-478 IFWLLKNSPE FLKSYDAAGT IHDYVVAMLC GLTRPLMSDQ NAASWGYFNT 251 300 ENSP00000225519/1-478 QSQSWNVETL RSSGFPVHLL PDIAEPGSVA GRTSHMWFEI PKGTQVGVAL ENSBTAP00000001095/1-478 RSQSWNLEIL RAAGFPVQLL PDVAEPGSVA GRTSQAWFEI PRGTQVGVAL bmy_00201T0/1-485 RSQSWNLEIL RDAGFPVHLL PDVTEPGNVA GRTSQAWFEI PKGTQVGVAL BACU006957/1-478 RSQSWNLEIL RDAGFPVHLL PDVTEPGSVA GRTSQAWFEI PKGTQVGVAL ENSTTRP00000001130/1-478 RSQSWNLETL RDAGFPVHLL PDVTEPGNVA GRTSRAWFEI PKGTQVGVAL 301 350 ENSP00000225519/1-478 GDLQASVYSC MAQRTDAVLN ISTSVQLAAS MPSGFQPAQT PDPTAPVAYF ENSBTAP00000001095/1-478 GDLQASVYSC MAQKTDAVLN ISTSVQLVAS MPSGFQPPET PDPAAPVAYF bmy_00201T0/1-485 GDLQASVYSC MAQRTDAVLN ISTSVQLVAS MPSGFQPVQT PDPAAPVAYF BACU006957/1-478 GDLQASVYSC MAQRTNAVLN ISTSVQLVAS MPSGFQPAQT PDPAAPVAYF ENSTTRP00000001130/1-478 GDLQASVYSC MAQRTDAVLN ISTSVQLVAS MPSGFQPVQT PDPAAPVAYF 351 400 ENSP00000225519/1-478 PYFNRTYLGV AASLNGGNVL ATFVHMLVQW MADL-GLEVE ESTVYSRMIQ ENSBTAP00000001095/1-478 PYFDRTYLAV AASLNGGNVL ATFVHMLVQW MADL-GLQVE ESMVYSCMIQ bmy_00201T0/1-485 PYFDRTYLAV AASLNGGNVL AMFVHMLVQW MADLAGLEVE ESTVYSRMIQ BACU006957/1-478 PYFDRTYLAV AASLNGGNVL AMFVHMLVQW MADL-GLEVE ESTVYSRMIQ ENSTTRP00000001130/1-478 PYFDRTYLAV AASLNGGNVL AMFVHMLVQW MADL-GLEAE ESTVYSRMIQ 401 450 ENSP00000225519/1-478 AAVQQRDTHL TITPTVLGER HLPDQLASVT RISSSDLSLG HVTRALCRGI ENSBTAP00000001095/1-478 AAAQQRDTCL TITPTVLGER HLPDQLASVT GISSSDLSLG HVTRALCRGI bmy_00201T0/1-485 AAAQQRDTCL TITPTVLGER HLPDQLASVT RISSSDLSLG HVTRALCRGI BACU006957/1-478 AAAQQRDTCL TITPTVLGER HLPDQLASVT SISSSDLSLG HVTRALCRGI ENSTTRP00000001130/1-478 AAAQQKDTCL TITPTVLGER HLPDQLASVT RISSSDLSLG HVTRALCRGI 451 500 ENSP00000225519/1-478 VQNLHSMLPI QQLQDWGVER VMGSGSALSR NDVLKQEVQR AFPLPMSFGQ ENSBTAP00000001095/1-478 VQNLHSMLPF RQLREWGVER VIGSGSALSR NEVLKQEVQR AFPLPVSYGQ bmy_00201T0/1-485 VQNLHSMLPF QQLQEWGVER VIGSGSALSR NEVLKQEVQR AFPFPVSYGQ BACU006957/1-478 VQNLHSMLPF QQLQEWGVER VIGSGSALSR NEVLKQEVQR AFPFPVSYGQ ENSTTRP00000001130/1-478 VQNLHSMLPF QQLQEWGVER VIGSGSALSR NEVLKQEVQR AFPFPVSYGQ 501 550 ENSP00000225519/1-478 DVDAAVGAAL VMLRRHLNQK ES ENSBTAP00000001095/1-478 DVDAAVGAAL VMLQRSLSQQ KS bmy_00201T0/1-485 DVDAAVGAAL VMLQRNLNQQ EY BACU006957/1-478 DVDAAVGAAL VMLQRNLNQQ EY ENSTTRP00000001130/1-478 DVDAAVGAAL VMLQRNLNQQ EY