KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 5 Type: P Thu May 15 16:13:13 2014 Check: 00 ..
Name: ENSP00000355551/1-399 Len: 415 Check: 6542 Weight: 1.00
Name: ENSBTAP00000001096/1-400 Len: 415 Check: 5844 Weight: 1.00
Name: BACU003380/1-399 Len: 415 Check: 5165 Weight: 1.00
Name: bmy_10466T0/1-305 Len: 415 Check: 7556 Weight: 1.00
Name: ENSTTRP00000013321/1-245 Len: 415 Check: 5313 Weight: 1.00
//
1 50
ENSP00000355551/1-399 MRPERPRPRG SAPGPMETPP WDPARNDSLP PTLTPAVPPY VKLGLTVVYT
ENSBTAP00000001096/1-400 -EAGASGPRR SAPGPMEAQP WDPLRNDSLP PTLTPAVPPY VKLGLTIVYT
BACU003380/1-399 ---------- -----MEAPP WDPLRNDSLP PTLTPAVPPY VKLGLTIVYT
bmy_10466T0/1-305 ---------- ---------- --MAEDAGFP EGHCSTQGQ- ----------
ENSTTRP00000013321/1-245 ---------- ---------- ---------- ---------- ----------
51 100
ENSP00000355551/1-399 VFYALLFVFI YVQLWLVLRY RHKRLSYQSV FLFLCLFWAS LRTVLFSFYF
ENSBTAP00000001096/1-400 VFYSLLFVFI YVQLWLVLRY RHKRLSYQSV FLFLCLFWAS LRTVLFSFYF
BACU003380/1-399 VFYSLLFLFI YVQLWLVLRY RHKRLSYQSV FLFLCLFWAS LRTVLFSFYF
bmy_10466T0/1-305 ---------- ---------- QEERRGAQGM FGSSVQRESR MQGVQV----
ENSTTRP00000013321/1-245 ---------- ---------- ---------- ---------- ----------
101 150
ENSP00000355551/1-399 KDFVAANSLS PFVFWLLYCF PVCLQFFTLT LMNLYFTQ-- ----------
ENSBTAP00000001096/1-400 KDFVAANALS PFVFWLLYCF PVCLQFFTLT LMNLYFTQ-- ----------
BACU003380/1-399 KDFVAANALS PFVFWLLYCF PVCLQFFTLT LMNLYFTQGD PEAQERKESL
bmy_10466T0/1-305 ---------- ---------- ---------- ---------- ----------
ENSTTRP00000013321/1-245 ---------- ---------- ---------- ---------- ----------
151 200
ENSP00000355551/1-399 --VIFKAKSK YSPELLKYRL PLYLASLFIS LVFLLVNLTC AVLVKTGNWE
ENSBTAP00000001096/1-400 --VIFKAKSK YSPELLKYRL PLYLASLFIS LVFLLVNLTC AVLVKTGTWE
BACU003380/1-399 SGVIFKAKSK YSPELLKYRL PLYLASLFIS LVFLLVNLTC AVLVKTGTWE
bmy_10466T0/1-305 --VIFKAKSK YSPELLKYRL PLYLASLFIS LVFLLVNLTC AVLVKTGTWE
ENSTTRP00000013321/1-245 ---------- ---------L PLYLASLFIS LVFLLVNLTC AVLVKTGTWE
201 250
ENSP00000355551/1-399 RKVIVSVRVA INDTLFVLCA VSLSICLYKI SKMSLANIYL ESKGSSVCQV
ENSBTAP00000001096/1-400 RKAIVSVRVA INDTLFVLCA VSLSICLYKI SKMSLANIYL ESKGSSVCQV
BACU003380/1-399 RKGIVSVRVA INDSLFVLCA VSLSICLYKI SKMSLANIYL ESKGSSVCQV
bmy_10466T0/1-305 RKGLVSVRVA INDSLFVLCA VSLSICLYKI SKMSLANIYL ESKGSSVCQV
ENSTTRP00000013321/1-245 RKGIVSVRVA INDSLFVLCA VSLSICLYKI SKMSLANIYL ESKGSSVCQV
251 300
ENSP00000355551/1-399 TAIGVTVILL YTSRACYNLF ILSFSQNKSV HSFDYDWYNV SDQADLKNQL
ENSBTAP00000001096/1-400 TAIGVTVILL YTSRACYNLF ILSFSQSKNV HSFDYDWYNV SDQADLKNQL
BACU003380/1-399 TAIGVTVILL YASRACYNLF ILSFSQSKNV HSFDYDWYNV SDQADLKNQL
bmy_10466T0/1-305 TAVGVTVILL YASRACYNLF ILSFSQSKNV HSFDYDWYNV SDQADLKNQL
ENSTTRP00000013321/1-245 TAVGVTVILL YASRACYNLF ILSFSQSRNV HSFDYDWYNV SDQADLKNQL
301 350
ENSP00000355551/1-399 GDAGYVLFGV VLFVWELLPT TLVVYFFRVR NPTKDLTNPG MVPSHGFSPR
ENSBTAP00000001096/1-400 GDAGYIVFGV VLFVWELLPT TLVVYFFRVR NSTKDLTNPG MVPSHGFGPR
BACU003380/1-399 GDAGYMVFGV VLFVWELLPT TLVVYFFRVR NSAKDLTNPG MVPSHGFGPR
bmy_10466T0/1-305 GDAGYIVFGV VLFVWELLPT TLVVYFFRVR NSXKDLTNPG MVPSHGFGPR
ENSTTRP00000013321/1-245 GDAGYIVFGV VLFVWELLPT TLVVYFFRVR NSAKDLTNPG MVPSHGFGPR
351 400
ENSP00000355551/1-399 SYFFDNPRRY DSDDDLAWNI APQGLQGGFA PDYYDWGQQT -NSFLAQAGT
ENSBTAP00000001096/1-400 SYFFDNPRRY DSDDDLAWNI APQGLQGSFA PDYYDWGQQT ANSFLAQVGT
BACU003380/1-399 SYFFDNPRRY DSDDDLAWNI APQGLQGSFA PDCYDWGQQT -NSFLAQVGT
bmy_10466T0/1-305 SYFFDNPRRY DSDDDLAWNI APQGLQGSFA PDCYDWGQQT -NSFLAQVGT
ENSTTRP00000013321/1-245 SYFFDNPRRY DSDDDLAWNI TPQGLQGSFA PDCYDWGQQT -NSFLAQVGT
401 450
ENSP00000355551/1-399 LQ-DSTLDPD KPSLG
ENSBTAP00000001096/1-400 LQPDSILDPD KPSHG
BACU003380/1-399 LQPDSILDPD KPSHG
bmy_10466T0/1-305 LQPDSILDPD KPSHG
ENSTTRP00000013321/1-245 LQPDSTLDPD KPSHG