KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:13:15 2014 Check: 00 .. Name: bmy_10515T0/1-688 Len: 1086 Check: 8980 Weight: 1.00 Name: ENSTTRP00000000174/1-1011 Len: 1086 Check: 3951 Weight: 1.00 Name: ENSBTAP00000001113/1-1016 Len: 1086 Check: 200 Weight: 1.00 Name: ENSP00000355759/1-1014 Len: 1086 Check: 2586 Weight: 1.00 Name: BACU001657/1-1004 Len: 1086 Check: 4226 Weight: 1.00 // 1 50 bmy_10515T0/1-688 GRARRQASAI YPERRVAYAA CSEAAAAASL DARAPAGSGP AGEAAIAAAG ENSTTRP00000000174/1-1011 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000001113/1-1016 ---------- ---------- ---------- ---------- ---------- ENSP00000355759/1-1014 ---------- ---------- ---------- ---------- ---------- BACU001657/1-1004 ---------- ---------- ---------- ---------- ---------- 51 100 bmy_10515T0/1-688 LQVAASGSRS CSSSRRRMAE SSDKLYRVEY AKSGRASCKK CSESIPKDSL ENSTTRP00000000174/1-1011 ---------- -------MAE SSDKLYRVEY AKSGRASCKK CSESIPKDSL ENSBTAP00000001113/1-1016 ---------- -------MAE SSDKLYRVEY AKSGRASCKK CKESIPKDSI ENSP00000355759/1-1014 ---------- -------MAE SSDKLYRVEY AKSGRASCKK CSESIPKDSL BACU001657/1-1004 ---------- -------MAE SSDKLYRVEY AKSGRASCKK CSESIPKDSL 101 150 bmy_10515T0/1-688 RMAIMVQSPM FDGKVPHWYH FSCFWKVGHS IRHPDVEVDG FSELRWDDQQ ENSTTRP00000000174/1-1011 RMAIMVQSPM FDGKVPHWYH FSCFWKVGHS IRHPDVEVDG FSELRWDDQQ ENSBTAP00000001113/1-1016 RMAFMVQSPM FDGKIPHWYH LSCFWKVGFS IWHPDVEVEG FSELRWDDQQ ENSP00000355759/1-1014 RMAIMVQSPM FDGKVPHWYH FSCFWKVGHS IRHPDVEVDG FSELRWDDQQ BACU001657/1-1004 RMAIMVQSPM FDGKVPHWYH FSCFWKVGHS IRHPDVEVDG FSELRWDDQQ 151 200 bmy_10515T0/1-688 KVKKTAEAGG ---VTGKGQG GVGSKTEKTL GDFAAEYAKS NRSTCKGCME ENSTTRP00000000174/1-1011 KVKKTAEAGG ---VTGKGQD GVGSKTEKTL GDFAAEYAKS NRSTCKGCME ENSBTAP00000001113/1-1016 TIKKMAETGG ATDVSGKGQD GVGSKTEKTL IDFGAGYAKS NRSTCKSCME ENSP00000355759/1-1014 KVKKTAEAGG ---VTGKGQD GIGSKAEKTL GDFAAEYAKS NRSTCKGCME BACU001657/1-1004 KVKKTAEAGG ---VTGKGQG GVGSKTEKTL GDFAAEYAKS NRSTCKGCME 201 250 bmy_10515T0/1-688 KIEKGQVRLS KKMLDPEKPQ LGMIDRWYHP NCFVQNREEL GFRPEYSASQ ENSTTRP00000000174/1-1011 KIEKGQVRLS KKMLDPEKPQ LGMIDRWYHP NCFVENREEL GFRPEYSASQ ENSBTAP00000001113/1-1016 KIDKGQVRLS KKVVYPDKPQ LGMVDCWYHP KCFVQKREEL GFRPEFSASQ ENSP00000355759/1-1014 KIEKGQVRLS KKMVDPEKPQ LGMIDRWYHP GCFVKNREEL GFRPEYSASQ BACU001657/1-1004 KIEKGQVRLS KKMLDPEKPQ LGMIDRWYHP NCFVQNREEL GFRPEYSASQ 251 300 bmy_10515T0/1-688 LKGFSLLTAE DKEALKKQLP GIKSEGKRKG DEVDGMEEVA KKKSRKEKDK ENSTTRP00000000174/1-1011 LKGFSLLAAE DKEALKRQLP AIKSEGKRKG DEVDGMEEVA KKKSRKEKDK ENSBTAP00000001113/1-1016 LMGFSVLTAE DQETLKKQLP AIKGERKRKG DEVDGIDEVT KKKSKKEKDK ENSP00000355759/1-1014 LKGFSLLATE DKEALKKQLP GVKSEGKRKG DEVDGVDEVA KKKSKKEKDK BACU001657/1-1004 LKGFSLLTAE DKEALKKQLP GIKSEGKRKG DEVDGMEEVA KKKSRKEKDK 301 350 bmy_10515T0/1-688 ESKLEKALKA QNNLIWNIKD ELKKACSTND LKELLIFNKQ QVPSGESAIL ENSTTRP00000000174/1-1011 ESKLEKALKA QNNLIWNIKD ELKKACSTND LKELLIFNKQ QVPSGESAIL ENSBTAP00000001113/1-1016 EIKLEKALKA QNDLIWNVKD ELKKACSTND LKELLIFNKQ EVPSGESAIL ENSP00000355759/1-1014 DSKLEKALKA QNDLIWNIKD ELKKVCSTND LKELLIFNKQ QVPSGESAIL BACU001657/1-1004 ESKLEKALKA QNNLIWNIKD ELKKACSTND LKELLIFNKQ QVPSGESAIL 351 400 bmy_10515T0/1-688 DLVADGMVFG ALLPCEECSG QLVFKSDAYY CTGDVTAWTK CMVKTQTPNR ENSTTRP00000000174/1-1011 DRVADGMVFG ALLPCEECSG QLVFKSDAYY CTGDVTAWTK CMVKTQTPNR ENSBTAP00000001113/1-1016 DRVADGMVFG ALLPCEECSG QLVFKGDAYY CTGDVTAWTK CMVKTQTPNR ENSP00000355759/1-1014 DRVADGMVFG ALLPCEECSG QLVFKSDAYY CTGDVTAWTK CMVKTQTPNR BACU001657/1-1004 DRVADGMVFG ALLPCEECSG QLVFKSDAYY CTGDVTAWTK CMVKTQTPNR 401 450 bmy_10515T0/1-688 KEWVTPKEFR E--ISCLKKL KIRKQDRIFP PETSAPLAAA PLPSAASAPA ENSTTRP00000000174/1-1011 KEWVTPKEFR E--ISYLKKL KIRKQDRIFP PETSAPLAAA PLPSAASAPA ENSBTAP00000001113/1-1016 KEWVTPKEFR E--ISYFKKL KIKKQDRIFP PESSTPVGAA APPSAASAPA ENSP00000355759/1-1014 KEWVTPKEFR E--ISYLKKL KVKKQDRIFP PETSASVAAT PPPSTASAPA BACU001657/1-1004 KEWVTPKGQL KGLLPTASLV EMCNQLCMFP FATNRR--HT PDPGL----- 451 500 bmy_10515T0/1-688 TVNS-APPDK PLSNMKILTL GKLSQNKDEV KATIEKLGGK LTGTANKASL ENSTTRP00000000174/1-1011 TVNS-APPDK PLSNMKILTL GKLSRNKDEV KATIEKLGGK LTGTVNKASL ENSBTAP00000001113/1-1016 AVHS-GPPDK PLSNMKILTL GKLSQNKDEV KATIEKLGGK LTGTANKASL ENSP00000355759/1-1014 AVNSSASADK PLSNMKILTL GKLSRNKDEV KAMIEKLGGK LTGTANKASL BACU001657/1-1004 -----SGRDK PLSSMKILTL GKLSQNKDEV KAAIEKLGGK LTGTANKASL 501 550 bmy_10515T0/1-688 CISTKKEVDK MNKKMEEVKE ANVRVVSEDF LQDISASTKS LQELLSTHLL ENSTTRP00000000174/1-1011 CISSKKEVDK MNKKMEEVKE ANVRVVSEDF LQDISTSTKS LQELLSTHLL ENSBTAP00000001113/1-1016 CISTKKEVDK MNKKMEEVKE ANIRVVSEDF LQDISASTKS LQELLSTHLL ENSP00000355759/1-1014 CISTKKEVEK MNKKMEEVKE ANIRVVSEDF LQDVSASTKS LQELFLAHIL BACU001657/1-1004 CISTKKEVDK MNKKMEEVKE ANVRVVSEDF LQDISASTKS LQELLSTHLL 551 600 bmy_10515T0/1-688 SPWGAEVKAE PVEAVAPKGK SGAVLSKKSK GPVKEEGTNK SEKRMKLTLK ENSTTRP00000000174/1-1011 SPWGAEVKAE PVEAVAPKGK SGAVLSKKSK GPVKEEGTNK SEKRMKLTLK ENSBTAP00000001113/1-1016 SPWGAEVKVE PVEAVAPKGK SGAAPSKKSK GPVKEEGTNK SEKRMKLTLK ENSP00000355759/1-1014 SPWGAEVKAE PVEVVAPRGK SGAALSKKSK GQVKEEGINK SEKRMKLTLK BACU001657/1-1004 SPWGAEVKAE PVEAVAPKGK SGAVLSKKSK GPVKEEGTNK SEKRMKLTLK 601 650 bmy_10515T0/1-688 GGAAVDPDSG KEAGVSCGRP AG-------- ---------- ---------- ENSTTRP00000000174/1-1011 GGAAXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000001113/1-1016 GGAAVDPDSG LEHNAHVLEK GGKVFSATLG LVDIVKGTNS YYKLQLLEDD ENSP00000355759/1-1014 GGAAVDPDSG LEHSAHVLEK GGKVFSATLG LVDIVKGTNS YYKLQLLEDD BACU001657/1-1004 GGAAVDPDSG LEHSAHVLEK GGKVFSATLG LVDIVKGTNS YYKLQLLEDD 651 700 bmy_10515T0/1-688 ---------- --------GG NRVGRAAPRP PA-------- ---------- ENSTTRP00000000174/1-1011 XXXXYWIFRS WGRVGTVIGS NKLEQMPSKE EAIEHFTKLY EEKTGNAWHS ENSBTAP00000001113/1-1016 KESRYWIFRS WGRVGTVIGS NKLEQMPSKE DAIEHFMKLY EEKTGNAWHS ENSP00000355759/1-1014 KENRYWIFRS WGRVGTVIGS NKLEQMPSKE DAIEHFMKLY EEKTGNAWHS BACU001657/1-1004 RESRYWIFRS WGRVGTVIGS NKLEQMPSKE DAIEQFTKLY EEKTGNAWHS 701 750 bmy_10515T0/1-688 ---------- ---------- ---------- ----SRLP-- ---------- ENSTTRP00000000174/1-1011 KNFTKHPKKF YPLEIDYGQD EEAVKKLTVN PGTKSKLPKP VQDLIKMIFD ENSBTAP00000001113/1-1016 KNFTKHPKKF YPLEIDYGQD EEAVKKLTVN PGTKSKLPKP VQNLIKMIFD ENSP00000355759/1-1014 KNFTKYPKKF YPLEIDYGQD EEAVKKLTVN PGTKSKLPKP VQDLIKMIFD BACU001657/1-1004 KNFTKYPKKF YPLEIDYGQD EEAVKKLTVN PGTKSKLPKP VQDLIKMIFD 751 800 bmy_10515T0/1-688 ---------- ---------- ---------- ---------- ----GPESAH ENSTTRP00000000174/1-1011 VESMKKAMVE YEIDLQKMPL GKLSKRQIQA AYSILSEVQQ VLSQGSSDSQ ENSBTAP00000001113/1-1016 VESMKKAMVE YEIDLQKMPL GKLSKRQIQA AYSILSEVQQ ALSQGSSDSH ENSP00000355759/1-1014 VESMKKAMVE YEIDLQKMPL GKLSKRQIQA AYSILSEVQQ AVSQGSSDSQ BACU001657/1-1004 VESMKKAMVE YEIDLQKMPL GKLSKRQIQA AYSILSEVQQ AVSQGSSDSQ 801 850 bmy_10515T0/1-688 VLG------- ------GTCR PPS------- ---------- ---------- ENSTTRP00000000174/1-1011 ILDLSNRFYT LIPHDFGMKK PPLLSNSDSV QAKVEMLDNL LDIEVAYSLL ENSBTAP00000001113/1-1016 ILDLSNRFYT LIPHDFGMKK PPLLNNANSV QAKVEMLDNL LDIEVAYSLL ENSP00000355759/1-1014 ILDLSNRFYT LIPHDFGMKK PPLLNNADSV QAKVEMLDNL LDIEVAYSLL BACU001657/1-1004 ILDLSNRFYT LIPHDFGMKK PPLLSSPDSV QAKVEMLDNL LDIEVAYSLL 851 900 bmy_10515T0/1-688 ---------- PCGNRH---- ---------- ------RSFA RDRSGT---- ENSTTRP00000000174/1-1011 RGGSDDSSKD PIDVNYEKLR TDIMVVDKDS EEAEIIRKYV KNTHATTHNA ENSBTAP00000001113/1-1016 RGGSDDSSKD PIDVNYEKLK TDIKVVDKDS EEAEIIRKYV KNTHATTHNA ENSP00000355759/1-1014 RGGSDDSSKD PIDVNYEKLK TDIKVVDRDS EEAEIIRKYV KNTHATTHNA BACU001657/1-1004 RGGSDDSSKD PIDVNYEKLK TDIMVVDKDS EEAEIIRKYV KNTHATTHNA 901 950 bmy_10515T0/1-688 ---------- -------QRT RP-------- ----GER--- -----REGVQ ENSTTRP00000000174/1-1011 YDLEVVDILR IERE-ESQRY KPFKQLHNRR LLWHGSRTTN FAGILSQSLR ENSBTAP00000001113/1-1016 YDLEVVDIFK IEREGESQRY KPFKQLHNRR LLWHGSRTTN FAGILSQGLR ENSP00000355759/1-1014 YDLEVIDIFK IEREGECQRY KPFKQLHNRR LLWHGSRTTN FAGILSQGLR BACU001657/1-1004 YDLEVVDIFK IEREGESQRY KPFKQLHNRR LLWHGSRTTN FAGILSQGLR 951 1000 bmy_10515T0/1-688 RHPR------ ---------- ---------- ---------- ---------- ENSTTRP00000000174/1-1011 IAP-EAPVTG YMFGKGIYFA DMVSKSANYC HTSQGDPIGL ILLGEVALGN ENSBTAP00000001113/1-1016 IAPPEAPVTG YMFGKGIYFA DMVSKSANYC HTSQGDPIGL ILLGEVALGN ENSP00000355759/1-1014 IAPPEAPVTG YMFGKGIYFA DMVSKSANYC HTSQGDPIGL ILLGEVALGN BACU001657/1-1004 IAPPEAPVTG YMFGKGIYFA DMVSKSANYC HTSQGDPIGL ILLGEVALGN 1001 1050 bmy_10515T0/1-688 ---------- ---PGGHR-- ---------- ---------- ---------- ENSTTRP00000000174/1-1011 MYELKHASHI SKLPKGKPSV KGLGKTTPDP SASITMDGVE VPLGTGISSG ENSBTAP00000001113/1-1016 MYELKHASHI SKLPKGKHSV KGLGKTTPDP SASITVDGVE VPLGTGISSG ENSP00000355759/1-1014 MYELKHASHI SKLPKGKHSV KGLGKTTPDP SANISLDGVD VPLGTGISSG BACU001657/1-1004 MYELKHASHI SKLPKGKHSV KGLGKTTPDP SASITMDGVE VPLGTGISSG 1051 1100 bmy_10515T0/1-688 ---------- ---------- ---------- ------ ENSTTRP00000000174/1-1011 VNDTCLLYNE YIVYDIAQVS LKYLLKLKFN FKTSLW ENSBTAP00000001113/1-1016 VNDTCLLYNE YIVYDIAQVH LKYLLKLKFN FKTSLW ENSP00000355759/1-1014 VNDTSLLYNE YIVYDIAQVN LKYLLKLKFN FKTSLW BACU001657/1-1004 VNDTCLLYNE YIVYDIAQVS LKYLLKLKFN FKTSLW