KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:13:16 2014 Check: 00 .. Name: bmy_10905T0/1-580 Len: 649 Check: 8922 Weight: 1.00 Name: ENSP00000284273/1-649 Len: 649 Check: 2646 Weight: 1.00 Name: ENSTTRP00000005405/1-649 Len: 649 Check: 1635 Weight: 1.00 Name: BACU017365/1-595 Len: 649 Check: 2816 Weight: 1.00 Name: ENSBTAP00000001118/1-595 Len: 649 Check: 3151 Weight: 1.00 // 1 50 bmy_10905T0/1-580 ---------- ---------- ---------- --------MD LDV------- ENSP00000284273/1-649 MAQYGHPSPL GMAAREELYS KVTPRRNRQQ RPGTIKHGSA LDVLLSMGFP ENSTTRP00000005405/1-649 MAQYGHPSPL GMAAREELYS KVTPRRNRQQ RPGTIKHGSA LDVLLSMGFH BACU017365/1-595 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000001118/1-595 ---------- ---------- ---------- ---------- ---------- 51 100 bmy_10905T0/1-580 ----SSPFAS MVLK------ --LFSHVGDP FLDDPLPREY VLYLRPTGPL ENSP00000284273/1-649 RARAQKALAS TGGRSVQAAC DWLFSHVGDP FLDDPLPREY VLYLRPTGPL ENSTTRP00000005405/1-649 RARAQKALAS TGGRSVQAAC DWLFSHVGDP FLDDPLPREY VLYLRPTGPL BACU017365/1-595 ----QKALAS TGGRSVQAAC DWLFSHVGDP FLDDPLPREY VLYLRPTGPL ENSBTAP00000001118/1-595 ----QKALAS TGGRSVQAAC DWLFSHVGDP FLDDPLPREY VLYLRPTGPL 101 150 bmy_10905T0/1-580 AQKLSDFWQQ SKQICGKNKA HNIFPHITLC QFFMCEDSKV DALGEALQTT ENSP00000284273/1-649 AQKLSDFWQQ SKQICGKNKA HNIFPHITLC QFFMCEDSKV DALGEALQTT ENSTTRP00000005405/1-649 AQKLSDFWQQ SKQICGKNNA HNIFPHITLC QFFMCEDSKV DALGEALQTT BACU017365/1-595 AQKLSDFWQQ SKQICGKNKA HNIFPHITLC QFFMCEDSKV DALGEALQTT ENSBTAP00000001118/1-595 AQKLSDFWQQ SKQICGKNKA HNIFPHITLC QFFMCEDSKV DALGEALQTT 151 200 bmy_10905T0/1-580 VSRWKCKFSA PLPLELYTSS NFIGLFVKED SAEVLKKFAA DFAAEAASKT ENSP00000284273/1-649 VSRWKCKFSA PLPLELYTSS NFIGLFVKED SAEVLKKFAA DFAAEAASKT ENSTTRP00000005405/1-649 VSRWKCKFSA PLPLELYTSS NFIGLFVKED SAEVLKKFAA DFAAEAASKT BACU017365/1-595 VSRWKCKFSA PLPLELYTSS NFIGLFVKED SAEVLKKFAA DFAAEAASKT ENSBTAP00000001118/1-595 VSRWRCKFSA PLPLELYTSS NFIGLFVKED SAEVLKKFAA DFAAEAASKT 201 250 bmy_10905T0/1-580 EVHVEPHKKQ LHVTLAYHFQ ASHLPTLEKL AQNIDVKLGC DWVATIFSRD ENSP00000284273/1-649 EVHVEPHKKQ LHVTLAYHFQ ASHLPTLEKL AQNIDVKLGC DWVATIFSRD ENSTTRP00000005405/1-649 EVHVEPHKKQ LHVTLAYHFQ ASHLPTLEKL AQNIDVKLGC DWVATIFSRD BACU017365/1-595 EVHVEPHKKQ LHVTLAYHFH ASHLPTLEKL AQNIDVKLGC DWVATIFSRD ENSBTAP00000001118/1-595 EVHVEPHKKQ LHVTLAYHFQ ASHLPTLEKL AQNIDVKLGC DWVATIFSRD 251 300 bmy_10905T0/1-580 IRFANHETLQ VIYPYTPQND DELELVPGDF IFMSPMEQTS TSEGWIYGTS ENSP00000284273/1-649 IRFANHETLQ VIYPYTPQND DELELVPGDF IFMSPMEQTS TSEGWIYGTS ENSTTRP00000005405/1-649 IRFANHETLQ VIYPYTPQND DELELVPGDF IFMSPMEQTS TSEGWIYGTS BACU017365/1-595 IRFANHETLQ VIYPYTPQND DELELVPGDF IFMSPTEQTS TSEGWIYGTS ENSBTAP00000001118/1-595 IRFANHETLQ VIYPYTPQND DELELVPGDF IFMSPMEQTS TSEGWIYGTS 301 350 bmy_10905T0/1-580 LTTGCSGLLP ENYITKADEC STWIFHGSYS ILNTSSSNAL SFGDGILERR ENSP00000284273/1-649 LTTGCSGLLP ENYITKADEC STWIFHGSYS ILNTSSSNSL TFGDGVLERR ENSTTRP00000005405/1-649 LTTGCSGLLP ENYITKADEC STWIFHGSYS ILNTSSSNAL SFGDGILERR BACU017365/1-595 LTTGCSGLLP ENYITKADEC STWIFHGSYS ILNTSSSNTL SFGDGILERR ENSBTAP00000001118/1-595 LTTGCSGLLP ENYITKADEC STWIFHGSYS ILNTSSSNAL SFGDGILERR 351 400 bmy_10905T0/1-580 QYDDQGLGDT TPLTIICQPT Q--------- ---RCLFVCR HGERMDVVFG ENSP00000284273/1-649 PYEDQGLGET TPLTIICQPM QPLRVNSQPG PQKRCLFVCR HGERMDVVFG ENSTTRP00000005405/1-649 QYEDQGLGDT TPLTVICQPT QPLRISGQPG PQKRCLFVCR HGERMDVVFG BACU017365/1-595 QYDDQGLGDT TPLTIICQPT QPLRISSQPG PQKRCLFVCR HGERMDVVFG ENSBTAP00000001118/1-595 QYEDQGLGDA TPLTIICQPT QPLRISSQPG PQKRCLFVCR HGERMDVVFG 401 450 bmy_10905T0/1-580 KYWLSQCFDA KGRYIRTNLN MPHSLPQRSG GFRDYEKDAP ITVFGCMQAR ENSP00000284273/1-649 KYWLSQCFDA KGRYIRTNLN MPHSLPQRSG GFRDYEKDAP ITVFGCMQAR ENSTTRP00000005405/1-649 KYWLSQCFDA KGRYVRTNLN MPHSLPQRSG GFRDYEKDAP ITVFGCMQAR BACU017365/1-595 KYWLSQCFDA KGRYIRTNLN MPHSLPQRSG GFRDYEKDAP ITVFGCMQAR ENSBTAP00000001118/1-595 KYWLSQCFDA KGRYIRTNLN MPHSLPQRSG GFRDYEKDAP ITVFGCMQAR 451 500 bmy_10905T0/1-580 LVGEALLESN TIIDHVYCSP SLRCVQTAYN ILKGLQQENH LKIRVEPGLF ENSP00000284273/1-649 LVGEALLESN TIIDHVYCSP SLRCVQTAHN ILKGLQQENH LKIRVEPGLF ENSTTRP00000005405/1-649 LVGEALLESN TIIDHVYCSP SLRCVQTAYN ILKGLQQENH LKIRVEPGLF BACU017365/1-595 LVGEALLESN TIIDHVYCSP SLRCVQTAYN ILKGLQQENH LKIRVEPGLF ENSBTAP00000001118/1-595 LVGEALLESN TIIDHVYCSP SLRCVQTAYN ILKGLQQENH LKIRVEPGLF 501 550 bmy_10905T0/1-580 EWTKWVAGNT LPAWIPPSEL AAANLSVDTT YRPHIPVSKL VVSESYDTYI ENSP00000284273/1-649 EWTKWVAGST LPAWIPPSEL AAANLSVDTT YRPHIPISKL VVSESYDTYI ENSTTRP00000005405/1-649 EWTKWVAGNT LPAWIPPSEL AAANLSVDTT YRPHIPVSKL VVSESYDTYI BACU017365/1-595 EWTKWVAGNT LPAWIPPSEL AAANLSVDTT YRPHIPVSKL VVSESYDTYI ENSBTAP00000001118/1-595 EWTKWVAGNT LPAWIPPSEL AAANLSVDTT YRPHIPVSKL VVSESYDTYI 551 600 bmy_10905T0/1-580 SRSFQVTKEI ISECKSKGNN ILIVAHASSL EACTCQLQGL SPQNSKDFVQ ENSP00000284273/1-649 SRSFQVTKEI ISECKSKGNN ILIVAHASSL EACTCQLQGL SPQNSKDFVQ ENSTTRP00000005405/1-649 SRSFQVTKEI ISECKSKGNN ILIVAHASSL EACTCQLQGL SPQNSKDFVQ BACU017365/1-595 SRSFQVTKEI ISECKSKGNN ILIVAHASSL EACTCQLQGL SPQNSKDFVQ ENSBTAP00000001118/1-595 SRSFQVTKEI ISECKSKGNN ILIVAHASSL EACTCQLQGL SPQNSKDFVQ 601 650 bmy_10905T0/1-580 MVRKIPYLGF CSCEELGETG IWQLTDPPIL PLTHGPTGGF NWRETLLQE ENSP00000284273/1-649 MVRKIPYLGF CSCEELGETG IWQLTDPPIL PLTHGPTGGF NWRETLLQE ENSTTRP00000005405/1-649 MVRKIPYLGF CSCEELGETG IWQLTDPPIL PLTHGPTGGF NWRETLLQE BACU017365/1-595 MVRKIPYLGF CSCEELGETG IWQLTDPPIL PLTHGPTGGF NWRETLLQE ENSBTAP00000001118/1-595 MVRKIPYLGF CSCEELGETG IWQLTDPPIL PLTHGPTGGF NWRETLLQE