KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:13:23 2014 Check: 00 .. Name: ENSP00000308339/1-1060 Len: 1258 Check: 344 Weight: 1.00 Name: ENSBTAP00000001137/1-1053 Len: 1258 Check: 1790 Weight: 1.00 Name: ENSTTRP00000014255/1-1037 Len: 1258 Check: 8090 Weight: 1.00 Name: bmy_08531T0/1-1230 Len: 1258 Check: 580 Weight: 1.00 Name: BACU004559/1-700 Len: 1258 Check: 8844 Weight: 1.00 // 1 50 ENSP00000308339/1-1060 ---------- MELWAPQRLP QTRGKATAPS KDPDRGFRRD GHHRPVPHSW ENSBTAP00000001137/1-1053 ---------- MEPWIPQWLP QPSGRPPAPS KDPDRGLWKD RYYQPIPHSW ENSTTRP00000014255/1-1037 ---------- MKPWVPQWPP QPEGRPPAPS RDPDRGLQRD RYYRPIRHSW bmy_08531T0/1-1230 EDKVTTQLTQ NAREIQKWPP QPAGRPPAPS RDPDRGLQRD RYYRPIRHSW BACU004559/1-700 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000308339/1-1060 HNGERFHQWQ DNRGSPQPQQ EPRADHQQQP HYASRPGDWH QPVSGVDYYE ENSBTAP00000001137/1-1053 HNGERVHQRQ DVGRSPQPQQ DPREDL-QEP HYAARSGEWR PPVSGVDYYE ENSTTRP00000014255/1-1037 HSGERVQQEQ DMGRSPQPQQ DPGADH-QQP HYASRPGEWH PPVSRDDYYK bmy_08531T0/1-1230 HNGERVHQRQ DMGRSPQPQQ DPGADH-QQP HYASRPGEWH QPVSRVDYYK BACU004559/1-700 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000308339/1-1060 GGYRNQLYSR PGYENSYQSY QSPTMREEYA YGSYYYHGHP QWLQEERVPR ENSBTAP00000001137/1-1053 GGYPSQLYSR WSIEDLYQSY YSPALREEYA YGSYYYHGHP QQLQEERVPR ENSTTRP00000014255/1-1037 GGYPSQLYSR PGIEDLYQSY HSPALREEYA YGSYYYHGHP QQLREEGVAR bmy_08531T0/1-1230 GGYPSQLYSR PGLEDLYQSY HSPALREEYT YGSYYYHGHP QQLRGERVPR BACU004559/1-700 ---------- ---------- ---------- ---------- --MRMNRILS 151 200 ENSP00000308339/1-1060 QRSPYIWHED YREQKYLDEH HYENQHSPFG TNSETHFQSN SRNPCKDSPA ENSBTAP00000001137/1-1053 QGSPYIWQED HRDQKYLNDH QHENQNSPFG TNRETQFQSK SRNPYKDSPA ENSTTRP00000014255/1-1037 QGSPYIWHED YRDQKYLNEH QHENQNSPFG TNSETQFXXX XXXXXXXXXX bmy_08531T0/1-1230 QGSPYNWHED YRDQKYLNEH QHENQNSPFG TNSETQFQSK RWNXYKDSPA BACU004559/1-700 QDGPLSXXXX X--------- ---------- ---------- ---------- 201 250 ENSP00000308339/1-1060 SNSGQEWPGE LFPGSLLAEA QKNKPSLASE SNLLQQRESG LSSSSYELSQ ENSBTAP00000001137/1-1053 SNSGQERPED LFMESPLTGA QKNKLSLMEE SNLLWQHESG LTSSSYELSQ ENSTTRP00000014255/1-1037 XXXXXXXXXX XXXXXXXXXX XXXXPSLTEE SNLLRQHESG LTSSSYELSQ bmy_08531T0/1-1230 SNSGQERPGD LFLESPLTGA QKNKPSLTEE SNLLQQHESG LTSSSYELSQ BACU004559/1-700 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000308339/1-1060 YIRDAPERDD PPASAAWSPV QA-DVSSAGP KAPMKFYIPH VPVSFGPGGQ ENSBTAP00000001137/1-1053 YMADASELCD PMTSAVWSPV QAEDISAAGP KEPMKFYVPH MPVSFGPGGQ ENSTTRP00000014255/1-1037 YMTDASELYD PMAAAGWSPV QAEDISAAGP KTPMKFYIPH VPVSFGPGGQ bmy_08531T0/1-1230 YMADASELYD PMAAVAWRPI QAEDISAAGP KTPMKFYIPH VPVSFGPGGQ BACU004559/1-700 ---------- ---------- ---------- ---------- ---------- 301 350 ENSP00000308339/1-1060 LVHVGPSSPT DGQAALVELH SMEVILNDSE EQEEMRSFSG PLIREDVHKV ENSBTAP00000001137/1-1053 LVCVSPSSPS DGQTALVELH SMEVILNDSE EQEEMRTFSG PLIREDVHKV ENSTTRP00000014255/1-1037 LVCVGPRSLS DGQTALVELH SMEVILNDSE EQEKMRTFSG PLIREDVHKV bmy_08531T0/1-1230 LVCVGPRSPS DGQTALVELH SMEVILNDSE EQEKMRTFSG PLIREDVHKV BACU004559/1-700 ---------- ---------- ---------- ---------- ---------- 351 400 ENSP00000308339/1-1060 DIMTFCQQKA AQSCKSETLG SRDSALLWQL LVLLCRQNGS MVGSDIAELL ENSBTAP00000001137/1-1053 DIMTFCQQKA AQSHKSETPG SRDSALLWQL LVLLCRQNGS MVGSDIAELL ENSTTRP00000014255/1-1037 DIVTFCQQKA AQSRKSETPG SRDSALLWQL LVLLCRQNGS VVGSDIAELL bmy_08531T0/1-1230 DIVTFCQQKA AQSRKSETPG SRDSALLWQL LVLLCRQNGS VVGSDIAELL BACU004559/1-700 ---------- ---------- ---------- ---------- ----DIAELL 401 450 ENSP00000308339/1-1060 MQDCKKLEKY KRQPPVANLI NLTDEDWPVL SSGTPNLLTG EIPPSVETPA ENSBTAP00000001137/1-1053 MQDCKKLEKY KRQPPVANLI NLTDEDWPVL SSGTRDLLTG EIPPSVETPA ENSTTRP00000014255/1-1037 VQDCKKLEKY KRQPPVANLI NLTDEDWPVL SLGTRNLLTG EVPPSVETPA bmy_08531T0/1-1230 MQDCKKLEKY KRQPPVANLI NLTDEDWPVL SLGTRNLLTG EIPPSVETPA BACU004559/1-700 MQDCKKLEKY KRQPPVANLI NLTDEDRPVL SLGTRNLLTG EIPPSVETPA 451 500 ENSP00000308339/1-1060 QIVEKFTRLL YYGRKKEALE WAMKNHLWGH ALFLSSKMDP QTYSWVMSGF ENSBTAP00000001137/1-1053 QIVEKFTKLL YYGRKKEALE WAMKNHLWGH ALFLSSKMDP RTHSWVMSGF ENSTTRP00000014255/1-1037 QIVEKFTKLL YYGRKKATLE WAMKNDLWGH ALFLASKMDP RTYSWVMSGF bmy_08531T0/1-1230 QI-------- ------EALE WAMKNHLWGH ALFLASKMDP RTYSWVMSGF BACU004559/1-700 QIVEKFTKLL YYGRKKEALE WAMKNHLWGH ALFLASKMDP RTYSWVMSGF 501 550 ENSP00000308339/1-1060 TSTLALNDPL QTLFQLMSGR IPQAAT---- ---------- ---------- ENSBTAP00000001137/1-1053 TSTLALNDPL QTLFQLMSGR IPQAAT---- ---------- ---------- ENSTTRP00000014255/1-1037 TSTLALNDPL QTLFQLMSGR IPQAAT---- ---------- ---------- bmy_08531T0/1-1230 TSTLALNDPL QTLFQLMSGR IPQAATLLGL GAPGGNLKIS DQECHSIYLS BACU004559/1-700 TSTLALNDPL QTLFQLMSGR IPQAAT---- ---------- ---------- 551 600 ENSP00000308339/1-1060 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000001137/1-1053 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014255/1-1037 ---------- ---------- ---------- ---------- ---------- bmy_08531T0/1-1230 PNIPVCNAKS MSGHIAGIIM GVPGKPGNRQ QPSLLTYVLV RATLLSQFSI BACU004559/1-700 ---------- ---------- ---------- ---------- ---------- 601 650 ENSP00000308339/1-1060 ------CCGE KQWGDWRPHL AVILSNQAGD PELYQRAIVA IGDTLAGKGL ENSBTAP00000001137/1-1053 ------CCGD KQWGDWRPHL AVILSNQGGD PELYQRTIVA MGDTLAGKGL ENSTTRP00000014255/1-1037 ------CCGD EQWGDWRPHL AVILSNQGGD PELYQRTIVT MGDTLAGKGL bmy_08531T0/1-1230 FSAAFQCCGD EQWGDWRPHL AVILSNQGGD PDLYQRTIVT MGDTLAGKGL BACU004559/1-700 ------CCGD EQWGDWRPHL AVILSNQGGD PELYQRTIVT MGDTLAGKGL 651 700 ENSP00000308339/1-1060 VEAAHFCYLM AHVPFGHYTV KTDHLVLLGS SHSQEFLKFA TTEAIQRTEI ENSBTAP00000001137/1-1053 VEAAHFCYLM AHVPFGYYTV KTDYLGLLGS SHSQEFLKFA TTEAIQRTEI ENSTTRP00000014255/1-1037 VEAAHFCYLM AHVPFGSYTV KTDHLALLGS SHSQEFLKFA TTEAIQRTEI bmy_08531T0/1-1230 VEAAHFCYLM AHVPFGSYTV KTDHLALLGS SHSQEFLKFA TTEAIQRTEI BACU004559/1-700 VEAAHFCYLM AHVPFGSYTV KTDHLALLGS SHSQEFLKFA TTEAIQRTEI 701 750 ENSP00000308339/1-1060 FEYCQMLGRP KSFIPSFQVY KLLYASRLAD YGLVSQALHY CEAIGAAVLS ENSBTAP00000001137/1-1053 FEYCQMLGRP RSFIPSFQVY KLLYASRLAD YGLTSQALHY CEAVGTALLS ENSTTRP00000014255/1-1037 FEYCQMLGRP KSFIPSFQVY KLLYASRLAD YGLASQALHY CEAIGTALLS bmy_08531T0/1-1230 FEYCQMLGRP KSFIPSFQVY KLLYASRLAD YGLASQALHY CEAIGTALLS BACU004559/1-700 FEYCQMLGRP KSFIPSFQVY KLLYASRLAD YGLASQALHY CEAIGTALLS 751 800 ENSP00000308339/1-1060 QGESSHPVLL VELIKLAEKL KLSDPLVLER ---RSGDRDL EPDWLAQLR- ENSBTAP00000001137/1-1053 HGESSHPVLL VELIKLAERL KLSDPLVLER -RRHRGDRDL EPDWLVHLRG ENSTTRP00000014255/1-1037 QGENSHPVLL VELIKXXXXX XXXXXXXXXX ------XXXX XXXXXXXXXX bmy_08531T0/1-1230 QGENSHPVLL VELIKLAERL KLSDPLVLER HRRHRGDRDL EPDWLVHLRG BACU004559/1-700 QRENSHPVLL VELIKLAERL KLSDPLVLER HRRHRGDRDL EPDWLVHLRG 801 850 ENSP00000308339/1-1060 --RQLEQKVA GDIGDPHPTR SDISGAGGTT TENTFYQDFS GCQGYSEAPG ENSBTAP00000001137/1-1053 HHRELQQKEA GDIGRPQSAQ VVISEA-RKT PENTFYQDLS GPQGNSEAYG ENSTTRP00000014255/1-1037 XXXXXXQKVA GDIGDPCSAH SDILGA-RKT TDDTFYQDLS GHQGNSEALG bmy_08531T0/1-1230 HHKELQQKAA GDIGDPRSAH SDILGA-RKT TDDTFYQDLS GHQGNSEALG BACU004559/1-700 HHKELQQKAA GDIGDPRSAH SDILGA-RKT TDDTFYQDLS GHQGNSEALG 851 900 ENSP00000308339/1-1060 YRSALWLTPE QTCLLQPSPQ QPFPLQPGSY PAGGGAGQTG TPRPFYSVPE ENSBTAP00000001137/1-1053 DRSALWPTLE QSGPAQLSPQ Q-----PRSY PTGGGSGQMG VPVPLYSVPE ENSTTRP00000014255/1-1037 DRSALWPTLE PMGPAQPSPQ QPFPLQPSSY PAGGGSGQTG VPVPLYSVPE bmy_08531T0/1-1230 DCSALWPTLE PMGPAHPSPQ QPLPLQPSSY PAGGGSGQTG VPVPLYSVPE BACU004559/1-700 DCSALWPTLE PMGPAHPSPQ QPLPLQPSSY PAGGGSGQTG VPVPLYSVPE 901 950 ENSP00000308339/1-1060 THLPGTGSSV AVTEATGGTV WEEMLQTHLG PGENTVSQET SQPPDGQEVI ENSBTAP00000001137/1-1053 THLLGTSGSM AVTGAPGGTA WEEAQQIHLP P----VSPET LQHPDGQKAI ENSTTRP00000014255/1-1037 AHLPGTGGSV AVTGTPGGRA WEEAQQMHPP PGENTVSPET FQHPDGQKVV bmy_08531T0/1-1230 THLPGTGGSV AVTGTPGGRA WEEAQQMHPP PGENTVSPET FQHPDGQKVV BACU004559/1-700 THLPGTGGSV AVTGTPGGRA WEEAQQMHPP PGENTVSPET FQHPDGQKVV 951 1000 ENSP00000308339/1-1060 SKPQT----- ---------- ---------- ---------- --PLAARP-- ENSBTAP00000001137/1-1053 SRPQV----- ---------- ---------- ---------- --PLIPRA-- ENSTTRP00000014255/1-1037 SKPQV----- ---------- ---------- ---------- --PLIPRP-- bmy_08531T0/1-1230 SKPQILRGGE EACSGSCSVL PTYIHGGRAG RAECSFGLTH PLPLMPSSYC BACU004559/1-700 SKPQV----- ---------- ---------- ---------- --PLISRA-- 1001 1050 ENSP00000308339/1-1060 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000001137/1-1053 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014255/1-1037 ---------- ---------- ---------- ---------- ---------- bmy_08531T0/1-1230 CTEHLLCSAP PWKTLDISSF LLIFTLLYFQ EGPTAAESLL PRRMRRSPPM BACU004559/1-700 ---------- ---------- ---------- ---------- ---------- 1051 1100 ENSP00000308339/1-1060 RSISESSASS AKEDEKESSD EADK-NSPRN TAQRGKLGD- ---------G ENSBTAP00000001137/1-1053 RSISESSIVS VKEDEEEPPR RQIKIFPKYR PERKARKRE- ---------- ENSTTRP00000014255/1-1037 RTISESSAVS VKEDDGESSN EAEKKKSSEN TAQRGKLGD- ---------A bmy_08531T0/1-1230 RQIRSLPKTP PREKSSETRR RVQRWRDSSL PRGRSRAGNL GFGGVPAPPV BACU004559/1-700 RNISESSTVS VKEDEEESSD EADK-KSSEN TAQREKLGD- ---------A 1101 1150 ENSP00000308339/1-1060 KEHTKSSGFG WFSWFRSKPT KNASPAGDED SSDSPDSE-E TPRASSPHQA ENSBTAP00000001137/1-1053 -GNTKSSGFG WFSWFRSKPT HNASPSGEED SSDSPDSE-E MPRAASLPQP ENSTTRP00000014255/1-1037 KENTKGLGFG WLSWFRPKPA GDAPPSGDED ASDSPDSE-E APRASAPPGP bmy_08531T0/1-1230 SPPSQSSGFG WLSWFRPKPA SDAPPPGDED ASDGPDSEQE APRASSPPQP BACU004559/1-700 KESTKSSGFG WLSWFRPKPA RDAPPPGDKD ASDSPDSE-E DPRASSPPQP 1151 1200 ENSP00000308339/1-1060 GLGLSLTPSP ESPPLPDVSA FSRGRGGGEG RGSASSGGAA AGAGVGGLSG ENSBTAP00000001137/1-1053 SPSLSLTPSP DPQSLLGASA FSRDTGGDEV RGSVSGVGTA EGPGSGGLSG ENSTTRP00000014255/1-1037 SPGLSPTPPP APQSLPDAGA FSRDTGGSEA RGSASGAGRA EGTGNGGLLG bmy_08531T0/1-1230 SPGLSPTPPP APQPLPDAGA SSRDTGGSEA RGSASGAGRA EGTGSGGLLG BACU004559/1-700 SPGLSPTPPP APQPLPDAGA SSRDTGGSDA RGSASGAGRA EGTGSGGLSG 1201 1250 ENSP00000308339/1-1060 PESVSFELCS NPGVLLPPPA LKGAVPLYNP SQVPQLPTAT SLNRPNRLAQ ENSBTAP00000001137/1-1053 PEGVSTELCF NAGVLLPPPS VKGSVPLYNP SQVPQLSTVT SLNRPNRLAQ ENSTTRP00000014255/1-1037 PQGVSSGLYF NPGVLLPPPT LKGAVPLYNP SQVPQ----- ---------- bmy_08531T0/1-1230 PEDVSSGLYF SPGVLLPPPP LKGA------ -----LSMAT SLNRPNRLAQ BACU004559/1-700 PEDVSSGLYF NPGVLLPPPP LKGAVPLYNP SQIPQLSMAT SLNRPNRLAQ 1251 1300 ENSP00000308339/1-1060 RRYPTQPC ENSBTAP00000001137/1-1053 RRYPTQS- ENSTTRP00000014255/1-1037 -------- bmy_08531T0/1-1230 RRYPTQP- BACU004559/1-700 RRYPTQP-