KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 5 Type: P Thu May 15 16:13:23 2014 Check: 00 ..
Name: ENSP00000308339/1-1060 Len: 1258 Check: 344 Weight: 1.00
Name: ENSBTAP00000001137/1-1053 Len: 1258 Check: 1790 Weight: 1.00
Name: ENSTTRP00000014255/1-1037 Len: 1258 Check: 8090 Weight: 1.00
Name: bmy_08531T0/1-1230 Len: 1258 Check: 580 Weight: 1.00
Name: BACU004559/1-700 Len: 1258 Check: 8844 Weight: 1.00
//
1 50
ENSP00000308339/1-1060 ---------- MELWAPQRLP QTRGKATAPS KDPDRGFRRD GHHRPVPHSW
ENSBTAP00000001137/1-1053 ---------- MEPWIPQWLP QPSGRPPAPS KDPDRGLWKD RYYQPIPHSW
ENSTTRP00000014255/1-1037 ---------- MKPWVPQWPP QPEGRPPAPS RDPDRGLQRD RYYRPIRHSW
bmy_08531T0/1-1230 EDKVTTQLTQ NAREIQKWPP QPAGRPPAPS RDPDRGLQRD RYYRPIRHSW
BACU004559/1-700 ---------- ---------- ---------- ---------- ----------
51 100
ENSP00000308339/1-1060 HNGERFHQWQ DNRGSPQPQQ EPRADHQQQP HYASRPGDWH QPVSGVDYYE
ENSBTAP00000001137/1-1053 HNGERVHQRQ DVGRSPQPQQ DPREDL-QEP HYAARSGEWR PPVSGVDYYE
ENSTTRP00000014255/1-1037 HSGERVQQEQ DMGRSPQPQQ DPGADH-QQP HYASRPGEWH PPVSRDDYYK
bmy_08531T0/1-1230 HNGERVHQRQ DMGRSPQPQQ DPGADH-QQP HYASRPGEWH QPVSRVDYYK
BACU004559/1-700 ---------- ---------- ---------- ---------- ----------
101 150
ENSP00000308339/1-1060 GGYRNQLYSR PGYENSYQSY QSPTMREEYA YGSYYYHGHP QWLQEERVPR
ENSBTAP00000001137/1-1053 GGYPSQLYSR WSIEDLYQSY YSPALREEYA YGSYYYHGHP QQLQEERVPR
ENSTTRP00000014255/1-1037 GGYPSQLYSR PGIEDLYQSY HSPALREEYA YGSYYYHGHP QQLREEGVAR
bmy_08531T0/1-1230 GGYPSQLYSR PGLEDLYQSY HSPALREEYT YGSYYYHGHP QQLRGERVPR
BACU004559/1-700 ---------- ---------- ---------- ---------- --MRMNRILS
151 200
ENSP00000308339/1-1060 QRSPYIWHED YREQKYLDEH HYENQHSPFG TNSETHFQSN SRNPCKDSPA
ENSBTAP00000001137/1-1053 QGSPYIWQED HRDQKYLNDH QHENQNSPFG TNRETQFQSK SRNPYKDSPA
ENSTTRP00000014255/1-1037 QGSPYIWHED YRDQKYLNEH QHENQNSPFG TNSETQFXXX XXXXXXXXXX
bmy_08531T0/1-1230 QGSPYNWHED YRDQKYLNEH QHENQNSPFG TNSETQFQSK RWNXYKDSPA
BACU004559/1-700 QDGPLSXXXX X--------- ---------- ---------- ----------
201 250
ENSP00000308339/1-1060 SNSGQEWPGE LFPGSLLAEA QKNKPSLASE SNLLQQRESG LSSSSYELSQ
ENSBTAP00000001137/1-1053 SNSGQERPED LFMESPLTGA QKNKLSLMEE SNLLWQHESG LTSSSYELSQ
ENSTTRP00000014255/1-1037 XXXXXXXXXX XXXXXXXXXX XXXXPSLTEE SNLLRQHESG LTSSSYELSQ
bmy_08531T0/1-1230 SNSGQERPGD LFLESPLTGA QKNKPSLTEE SNLLQQHESG LTSSSYELSQ
BACU004559/1-700 ---------- ---------- ---------- ---------- ----------
251 300
ENSP00000308339/1-1060 YIRDAPERDD PPASAAWSPV QA-DVSSAGP KAPMKFYIPH VPVSFGPGGQ
ENSBTAP00000001137/1-1053 YMADASELCD PMTSAVWSPV QAEDISAAGP KEPMKFYVPH MPVSFGPGGQ
ENSTTRP00000014255/1-1037 YMTDASELYD PMAAAGWSPV QAEDISAAGP KTPMKFYIPH VPVSFGPGGQ
bmy_08531T0/1-1230 YMADASELYD PMAAVAWRPI QAEDISAAGP KTPMKFYIPH VPVSFGPGGQ
BACU004559/1-700 ---------- ---------- ---------- ---------- ----------
301 350
ENSP00000308339/1-1060 LVHVGPSSPT DGQAALVELH SMEVILNDSE EQEEMRSFSG PLIREDVHKV
ENSBTAP00000001137/1-1053 LVCVSPSSPS DGQTALVELH SMEVILNDSE EQEEMRTFSG PLIREDVHKV
ENSTTRP00000014255/1-1037 LVCVGPRSLS DGQTALVELH SMEVILNDSE EQEKMRTFSG PLIREDVHKV
bmy_08531T0/1-1230 LVCVGPRSPS DGQTALVELH SMEVILNDSE EQEKMRTFSG PLIREDVHKV
BACU004559/1-700 ---------- ---------- ---------- ---------- ----------
351 400
ENSP00000308339/1-1060 DIMTFCQQKA AQSCKSETLG SRDSALLWQL LVLLCRQNGS MVGSDIAELL
ENSBTAP00000001137/1-1053 DIMTFCQQKA AQSHKSETPG SRDSALLWQL LVLLCRQNGS MVGSDIAELL
ENSTTRP00000014255/1-1037 DIVTFCQQKA AQSRKSETPG SRDSALLWQL LVLLCRQNGS VVGSDIAELL
bmy_08531T0/1-1230 DIVTFCQQKA AQSRKSETPG SRDSALLWQL LVLLCRQNGS VVGSDIAELL
BACU004559/1-700 ---------- ---------- ---------- ---------- ----DIAELL
401 450
ENSP00000308339/1-1060 MQDCKKLEKY KRQPPVANLI NLTDEDWPVL SSGTPNLLTG EIPPSVETPA
ENSBTAP00000001137/1-1053 MQDCKKLEKY KRQPPVANLI NLTDEDWPVL SSGTRDLLTG EIPPSVETPA
ENSTTRP00000014255/1-1037 VQDCKKLEKY KRQPPVANLI NLTDEDWPVL SLGTRNLLTG EVPPSVETPA
bmy_08531T0/1-1230 MQDCKKLEKY KRQPPVANLI NLTDEDWPVL SLGTRNLLTG EIPPSVETPA
BACU004559/1-700 MQDCKKLEKY KRQPPVANLI NLTDEDRPVL SLGTRNLLTG EIPPSVETPA
451 500
ENSP00000308339/1-1060 QIVEKFTRLL YYGRKKEALE WAMKNHLWGH ALFLSSKMDP QTYSWVMSGF
ENSBTAP00000001137/1-1053 QIVEKFTKLL YYGRKKEALE WAMKNHLWGH ALFLSSKMDP RTHSWVMSGF
ENSTTRP00000014255/1-1037 QIVEKFTKLL YYGRKKATLE WAMKNDLWGH ALFLASKMDP RTYSWVMSGF
bmy_08531T0/1-1230 QI-------- ------EALE WAMKNHLWGH ALFLASKMDP RTYSWVMSGF
BACU004559/1-700 QIVEKFTKLL YYGRKKEALE WAMKNHLWGH ALFLASKMDP RTYSWVMSGF
501 550
ENSP00000308339/1-1060 TSTLALNDPL QTLFQLMSGR IPQAAT---- ---------- ----------
ENSBTAP00000001137/1-1053 TSTLALNDPL QTLFQLMSGR IPQAAT---- ---------- ----------
ENSTTRP00000014255/1-1037 TSTLALNDPL QTLFQLMSGR IPQAAT---- ---------- ----------
bmy_08531T0/1-1230 TSTLALNDPL QTLFQLMSGR IPQAATLLGL GAPGGNLKIS DQECHSIYLS
BACU004559/1-700 TSTLALNDPL QTLFQLMSGR IPQAAT---- ---------- ----------
551 600
ENSP00000308339/1-1060 ---------- ---------- ---------- ---------- ----------
ENSBTAP00000001137/1-1053 ---------- ---------- ---------- ---------- ----------
ENSTTRP00000014255/1-1037 ---------- ---------- ---------- ---------- ----------
bmy_08531T0/1-1230 PNIPVCNAKS MSGHIAGIIM GVPGKPGNRQ QPSLLTYVLV RATLLSQFSI
BACU004559/1-700 ---------- ---------- ---------- ---------- ----------
601 650
ENSP00000308339/1-1060 ------CCGE KQWGDWRPHL AVILSNQAGD PELYQRAIVA IGDTLAGKGL
ENSBTAP00000001137/1-1053 ------CCGD KQWGDWRPHL AVILSNQGGD PELYQRTIVA MGDTLAGKGL
ENSTTRP00000014255/1-1037 ------CCGD EQWGDWRPHL AVILSNQGGD PELYQRTIVT MGDTLAGKGL
bmy_08531T0/1-1230 FSAAFQCCGD EQWGDWRPHL AVILSNQGGD PDLYQRTIVT MGDTLAGKGL
BACU004559/1-700 ------CCGD EQWGDWRPHL AVILSNQGGD PELYQRTIVT MGDTLAGKGL
651 700
ENSP00000308339/1-1060 VEAAHFCYLM AHVPFGHYTV KTDHLVLLGS SHSQEFLKFA TTEAIQRTEI
ENSBTAP00000001137/1-1053 VEAAHFCYLM AHVPFGYYTV KTDYLGLLGS SHSQEFLKFA TTEAIQRTEI
ENSTTRP00000014255/1-1037 VEAAHFCYLM AHVPFGSYTV KTDHLALLGS SHSQEFLKFA TTEAIQRTEI
bmy_08531T0/1-1230 VEAAHFCYLM AHVPFGSYTV KTDHLALLGS SHSQEFLKFA TTEAIQRTEI
BACU004559/1-700 VEAAHFCYLM AHVPFGSYTV KTDHLALLGS SHSQEFLKFA TTEAIQRTEI
701 750
ENSP00000308339/1-1060 FEYCQMLGRP KSFIPSFQVY KLLYASRLAD YGLVSQALHY CEAIGAAVLS
ENSBTAP00000001137/1-1053 FEYCQMLGRP RSFIPSFQVY KLLYASRLAD YGLTSQALHY CEAVGTALLS
ENSTTRP00000014255/1-1037 FEYCQMLGRP KSFIPSFQVY KLLYASRLAD YGLASQALHY CEAIGTALLS
bmy_08531T0/1-1230 FEYCQMLGRP KSFIPSFQVY KLLYASRLAD YGLASQALHY CEAIGTALLS
BACU004559/1-700 FEYCQMLGRP KSFIPSFQVY KLLYASRLAD YGLASQALHY CEAIGTALLS
751 800
ENSP00000308339/1-1060 QGESSHPVLL VELIKLAEKL KLSDPLVLER ---RSGDRDL EPDWLAQLR-
ENSBTAP00000001137/1-1053 HGESSHPVLL VELIKLAERL KLSDPLVLER -RRHRGDRDL EPDWLVHLRG
ENSTTRP00000014255/1-1037 QGENSHPVLL VELIKXXXXX XXXXXXXXXX ------XXXX XXXXXXXXXX
bmy_08531T0/1-1230 QGENSHPVLL VELIKLAERL KLSDPLVLER HRRHRGDRDL EPDWLVHLRG
BACU004559/1-700 QRENSHPVLL VELIKLAERL KLSDPLVLER HRRHRGDRDL EPDWLVHLRG
801 850
ENSP00000308339/1-1060 --RQLEQKVA GDIGDPHPTR SDISGAGGTT TENTFYQDFS GCQGYSEAPG
ENSBTAP00000001137/1-1053 HHRELQQKEA GDIGRPQSAQ VVISEA-RKT PENTFYQDLS GPQGNSEAYG
ENSTTRP00000014255/1-1037 XXXXXXQKVA GDIGDPCSAH SDILGA-RKT TDDTFYQDLS GHQGNSEALG
bmy_08531T0/1-1230 HHKELQQKAA GDIGDPRSAH SDILGA-RKT TDDTFYQDLS GHQGNSEALG
BACU004559/1-700 HHKELQQKAA GDIGDPRSAH SDILGA-RKT TDDTFYQDLS GHQGNSEALG
851 900
ENSP00000308339/1-1060 YRSALWLTPE QTCLLQPSPQ QPFPLQPGSY PAGGGAGQTG TPRPFYSVPE
ENSBTAP00000001137/1-1053 DRSALWPTLE QSGPAQLSPQ Q-----PRSY PTGGGSGQMG VPVPLYSVPE
ENSTTRP00000014255/1-1037 DRSALWPTLE PMGPAQPSPQ QPFPLQPSSY PAGGGSGQTG VPVPLYSVPE
bmy_08531T0/1-1230 DCSALWPTLE PMGPAHPSPQ QPLPLQPSSY PAGGGSGQTG VPVPLYSVPE
BACU004559/1-700 DCSALWPTLE PMGPAHPSPQ QPLPLQPSSY PAGGGSGQTG VPVPLYSVPE
901 950
ENSP00000308339/1-1060 THLPGTGSSV AVTEATGGTV WEEMLQTHLG PGENTVSQET SQPPDGQEVI
ENSBTAP00000001137/1-1053 THLLGTSGSM AVTGAPGGTA WEEAQQIHLP P----VSPET LQHPDGQKAI
ENSTTRP00000014255/1-1037 AHLPGTGGSV AVTGTPGGRA WEEAQQMHPP PGENTVSPET FQHPDGQKVV
bmy_08531T0/1-1230 THLPGTGGSV AVTGTPGGRA WEEAQQMHPP PGENTVSPET FQHPDGQKVV
BACU004559/1-700 THLPGTGGSV AVTGTPGGRA WEEAQQMHPP PGENTVSPET FQHPDGQKVV
951 1000
ENSP00000308339/1-1060 SKPQT----- ---------- ---------- ---------- --PLAARP--
ENSBTAP00000001137/1-1053 SRPQV----- ---------- ---------- ---------- --PLIPRA--
ENSTTRP00000014255/1-1037 SKPQV----- ---------- ---------- ---------- --PLIPRP--
bmy_08531T0/1-1230 SKPQILRGGE EACSGSCSVL PTYIHGGRAG RAECSFGLTH PLPLMPSSYC
BACU004559/1-700 SKPQV----- ---------- ---------- ---------- --PLISRA--
1001 1050
ENSP00000308339/1-1060 ---------- ---------- ---------- ---------- ----------
ENSBTAP00000001137/1-1053 ---------- ---------- ---------- ---------- ----------
ENSTTRP00000014255/1-1037 ---------- ---------- ---------- ---------- ----------
bmy_08531T0/1-1230 CTEHLLCSAP PWKTLDISSF LLIFTLLYFQ EGPTAAESLL PRRMRRSPPM
BACU004559/1-700 ---------- ---------- ---------- ---------- ----------
1051 1100
ENSP00000308339/1-1060 RSISESSASS AKEDEKESSD EADK-NSPRN TAQRGKLGD- ---------G
ENSBTAP00000001137/1-1053 RSISESSIVS VKEDEEEPPR RQIKIFPKYR PERKARKRE- ----------
ENSTTRP00000014255/1-1037 RTISESSAVS VKEDDGESSN EAEKKKSSEN TAQRGKLGD- ---------A
bmy_08531T0/1-1230 RQIRSLPKTP PREKSSETRR RVQRWRDSSL PRGRSRAGNL GFGGVPAPPV
BACU004559/1-700 RNISESSTVS VKEDEEESSD EADK-KSSEN TAQREKLGD- ---------A
1101 1150
ENSP00000308339/1-1060 KEHTKSSGFG WFSWFRSKPT KNASPAGDED SSDSPDSE-E TPRASSPHQA
ENSBTAP00000001137/1-1053 -GNTKSSGFG WFSWFRSKPT HNASPSGEED SSDSPDSE-E MPRAASLPQP
ENSTTRP00000014255/1-1037 KENTKGLGFG WLSWFRPKPA GDAPPSGDED ASDSPDSE-E APRASAPPGP
bmy_08531T0/1-1230 SPPSQSSGFG WLSWFRPKPA SDAPPPGDED ASDGPDSEQE APRASSPPQP
BACU004559/1-700 KESTKSSGFG WLSWFRPKPA RDAPPPGDKD ASDSPDSE-E DPRASSPPQP
1151 1200
ENSP00000308339/1-1060 GLGLSLTPSP ESPPLPDVSA FSRGRGGGEG RGSASSGGAA AGAGVGGLSG
ENSBTAP00000001137/1-1053 SPSLSLTPSP DPQSLLGASA FSRDTGGDEV RGSVSGVGTA EGPGSGGLSG
ENSTTRP00000014255/1-1037 SPGLSPTPPP APQSLPDAGA FSRDTGGSEA RGSASGAGRA EGTGNGGLLG
bmy_08531T0/1-1230 SPGLSPTPPP APQPLPDAGA SSRDTGGSEA RGSASGAGRA EGTGSGGLLG
BACU004559/1-700 SPGLSPTPPP APQPLPDAGA SSRDTGGSDA RGSASGAGRA EGTGSGGLSG
1201 1250
ENSP00000308339/1-1060 PESVSFELCS NPGVLLPPPA LKGAVPLYNP SQVPQLPTAT SLNRPNRLAQ
ENSBTAP00000001137/1-1053 PEGVSTELCF NAGVLLPPPS VKGSVPLYNP SQVPQLSTVT SLNRPNRLAQ
ENSTTRP00000014255/1-1037 PQGVSSGLYF NPGVLLPPPT LKGAVPLYNP SQVPQ----- ----------
bmy_08531T0/1-1230 PEDVSSGLYF SPGVLLPPPP LKGA------ -----LSMAT SLNRPNRLAQ
BACU004559/1-700 PEDVSSGLYF NPGVLLPPPP LKGAVPLYNP SQIPQLSMAT SLNRPNRLAQ
1251 1300
ENSP00000308339/1-1060 RRYPTQPC
ENSBTAP00000001137/1-1053 RRYPTQS-
ENSTTRP00000014255/1-1037 --------
bmy_08531T0/1-1230 RRYPTQP-
BACU004559/1-700 RRYPTQP-