KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:13:24 2014 Check: 00 .. Name: ENSP00000330098/1-539 Len: 797 Check: 9656 Weight: 1.00 Name: ENSBTAP00000001141/1-534 Len: 797 Check: 5263 Weight: 1.00 Name: ENSTTRP00000010856/1-428 Len: 797 Check: 4556 Weight: 1.00 Name: bmy_07567T0/1-599 Len: 797 Check: 5636 Weight: 1.00 Name: BACU001455/1-669 Len: 797 Check: 4231 Weight: 1.00 // 1 50 ENSP00000330098/1-539 MAAPA--S-R QVRRRARAAP ----RPRSAE DWWWDRLAPR GSGYHLLQSD ENSBTAP00000001141/1-534 MASGTAGRAR RARRRVRVVH PAAARTRSAE DWWWDRLAPS GSGYHLLQSD ENSTTRP00000010856/1-428 ---------- ---------- ---------- ---------- ---------- bmy_07567T0/1-599 -MAPVVAR-R RARQRVRILP LAGARSRSAE DWWWDRLAPS GSGYHLLQSD BACU001455/1-669 -MAPVVAR-R RARQRVRILP LAGARSRSAE DWWWDRLAPS GSGYHLLQSD 51 100 ENSP00000330098/1-539 SMLLVLSEPG PARPRAQRRA SRRTPRQPPR GPSAAAKPKA GLRSEAAAAP ENSBTAP00000001141/1-534 SMLLVLPGPG PARPRAQRRA ARRAQRLRSP GSRAAE---- -----AKPRT ENSTTRP00000010856/1-428 ---------- ---------- ---------- ---------- ---------- bmy_07567T0/1-599 SMLLVLPGPG PARPRAQRRA ARRAQLLRLH GARAAE---- ---AKAKPRT BACU001455/1-669 SMLLVLPGPG PARPRAQRRA SRRAQLLRLR GARAAE---- ---AKAKPRT 101 150 ENSP00000330098/1-539 APAPAPTPTP EEGPDAGWGD RIPLEILVQI FGLLVAADGP MPFLGR---- ENSBTAP00000001141/1-534 APA----PTP LQEPDPGWGD RVPLEILLQI FGLLVAADGP IPFLGR---- ENSTTRP00000010856/1-428 ---------- ---------D RIPLEILLQI FGLLVAADGP IPFLGR---- bmy_07567T0/1-599 APAPAPAPVP QQEPDPGWGD RIPLEILLQI FGLLVAADGP IPFLGRYPRT BACU001455/1-669 APAPAPAPAP QQEPDPGWGD RIPLEILLQI FGLLVAADGP IPFLGR---- 151 200 ENSP00000330098/1-539 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000001141/1-534 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010856/1-428 ---------- ---------- ---------- ---------- ---------- bmy_07567T0/1-599 IAYSAGSQAD LLGTHRVAER PHTRPRERSL SGRPVGTPGA PLRTEGSAAL BACU001455/1-669 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000330098/1-539 AARVCRRWQE AASQPALWHT VTLSSPLVGR PAKGGVKAEK KLLASLEWLM ENSBTAP00000001141/1-534 AARVCRRWNE AASQPALWHT LTLSPPLAGR PAKSGAKAEK KLLSSLEWLM ENSTTRP00000010856/1-428 AARVCRRWHE AASQPALWHT LTLSPPLVGR PAKSGTKTEK KLLTSLEWLM bmy_07567T0/1-599 AARVCRRWHE AASQPALWHT LTLSPPLAGR PAKSGTKTEK KLLASLEWLM BACU001455/1-669 AARVCRRWHE AASQPALWHT LTLSPPLAGR PAKSGTKTEK KLLASLEWLM 251 300 ENSP00000330098/1-539 PN-------- ---------- ---------- --------RF SQLQRLTLIH ENSBTAP00000001141/1-534 PN-------- ---------- ---------- --------RF SQLQRLTLIH ENSTTRP00000010856/1-428 PS-------- ---------- ---------- --------RF SQLQRLTLIH bmy_07567T0/1-599 PSXPRPPPAS LHEGDGWGEG WQKGQRGNTV QLCLCCRPRF SQLQRLTLIH BACU001455/1-669 PS-------- ---------- ---------- --------RF SQLQRLTLIH 301 350 ENSP00000330098/1-539 WKSQVHPVLK LVGECCPRLT FLKLSGCHGV TADALVMLAK ACCQLHSLDL ENSBTAP00000001141/1-534 WKSQLHPVLK LVSESCPRLS FLKLSDCHGV TPDALIMLAK ACPQLHSLDI ENSTTRP00000010856/1-428 WKSQVHPVLK LVSESCPRLT FLKLSDCHGV TPDTLIMLAK ACPQLHSLDI bmy_07567T0/1-599 WKSQVHPVLK LVSESCPRLT FLKLSDCHGV TPDTLIMLAK ACPQLHSLDI BACU001455/1-669 WKSQVHPVLK LVSESCPRLT FLKLSDCHGV TPDTLIMLAK ACPQLHSLDI 351 400 ENSP00000330098/1-539 QHSMVESTAV VSFLEEAGSR MRKLWLTYSS QTTAILGALL GSCCPQLQVL ENSBTAP00000001141/1-534 QHSMVESTAV VGFLEEAGPR MQKLWLTYNS QTTAILGALL GSCCPQLQVL ENSTTRP00000010856/1-428 QHSMVESTAV VSFLEEAGPR MRKLWLTYSS QTTAILGALL GSCCPQLQLL bmy_07567T0/1-599 QHSMVESTAV VSFLEEAGPR MRKLWLTYSS QTTAVLGALL GSCCPQLQLL BACU001455/1-669 QHSMVESTAV VSFLEEAGPR MRKLWLTYSS QTTAVLGALL GSCCPQLQLL 401 450 ENSP00000330098/1-539 EVSTGINRNS IPLQLPVEAL QKGCPQLQVL RLLNLMWLPK PPGRGVAPGP ENSBTAP00000001141/1-534 EVSTGLNHNI TPLQLPVEAL QKGCPQLQVL RLLNLMWLPK PSGRAMTPGP ENSTTRP00000010856/1-428 EVSTGLNHNS TPLQLPVEAL QKGCPQLQVL RLLNLMWLPK PSGRATPPGP bmy_07567T0/1-599 EVSTGLNHNS TPLQLPVEAL QKGCPQLQVL RLLNLMWLPK PSGRAITPGP BACU001455/1-669 EVSTGLNHNS TPLQLPVEAL QKGCPQLQ-- ---------- ---------- 451 500 ENSP00000330098/1-539 GFPSLEELCL ASSTCNFVSN EVLGRLLHGS PNLRLLDLRG CARITPAGLQ ENSBTAP00000001141/1-534 GFPSLEELCL ASSTCNFVSN EVLGRLLHGS PHLRLLDLRG CARITPAGLH ENSTTRP00000010856/1-428 GFPSLEELCL ASSTCNFVSN EVLDRLLHGS PHLRLLDLRG CARITPAGLH bmy_07567T0/1-599 GFPRLEELCL ASSTCNFVSN EVLDRLLHGS PHLRLLDLRG CARITPAGLH BACU001455/1-669 -------LCL ASSTCNFVSN EVLDRLLHGS PHLRLLDLRG CARITPAGLH 501 550 ENSP00000330098/1-539 DLPCRELEQL HLGLYGTSDR LTLAKEGSPF LTQKWCHTLR ELDLSGQGFS ENSBTAP00000001141/1-534 DLPCQELEQL HLGLYGMSDR LTLAKEGSPL LTQKWCHSLR ELDLSGQGFS ENSTTRP00000010856/1-428 DLPCQGLEQL HLGLYGMSDR LTLAKEGSLL LTQKWCHTLQ ELDLSGQGFS bmy_07567T0/1-599 DLPCQELEQL HLGLYGMSDR LTLAKEGSLL LTQKWCHTLQ ELDLSGQGFS BACU001455/1-669 DLPCQELEQL HLGLYGMSDR LTLAKEGSLL LTQKWCHTLQ ELDLSGQGFS 551 600 ENSP00000330098/1-539 EKDLEQALAA FLSTPGGSHP ALCSLNLRGT RVTPSTVSSV ISSCPGLLYL ENSBTAP00000001141/1-534 EKDLEQALAA FSGTPGGSHL ALCSLNLRGT RVTPGTVSSV ISSCPGLRYL ENSTTRP00000010856/1-428 ERDLEQALAA FSGAPGGSHL ALCSLNLRGT RVTASTVSAV ISNCPGLLYL bmy_07567T0/1-599 EKDLEQALAA FSGTPGGSHL ALCSLNLRGT RVTPSTVRSA SPPPP----- BACU001455/1-669 EKDLEQALAA FSGTPGGSHL ALCSLNLRGT RVTPGTVSSV ISNCPGLLYL 601 650 ENSP00000330098/1-539 NLESCRCLPR GLKRAYRGLE EVQ------- ---------- ---------- ENSBTAP00000001141/1-534 NLESCRCLPR GLKRAYRGPE EVQ------- ---------- ---------- ENSTTRP00000010856/1-428 NLESCRCLPR GLKRAYRGAE EVQ------- ---------- ---------- bmy_07567T0/1-599 ---------- ---------- -VP------- ---------- ---------- BACU001455/1-669 NLESCRCLPR GLKRAYRGPE EVQRYECGCE QWAVGSGNGR AAQLTAPKGR 651 700 ENSP00000330098/1-539 ---------- -----WCL-- ---------- ---------- ---------- ENSBTAP00000001141/1-534 ---------- -----WCL-- ---------- ---------- ---------- ENSTTRP00000010856/1-428 ---------- -----WCL-- ---------- ---------- ---------- bmy_07567T0/1-599 ---------- -----WSQ-- ---------- ---------- ---------- BACU001455/1-669 LSGLPATSGS KPFQLWAQGL FCTERNLAKR LKNNSFYPFT QQQPNVFVLE 701 750 ENSP00000330098/1-539 ---------- ---------- -EQLLTSP-- ---------- ---------- ENSBTAP00000001141/1-534 ---------- ---------- -EQLLTSLP- ---------- ---------- ENSTTRP00000010856/1-428 ---------- ---------- -RQLLTSLA- ---------- ---------- bmy_07567T0/1-599 ---------- ---------- -YGLIP---- ---------- ---------- BACU001455/1-669 YYLDTLWKGT LLFIVCFFLV SFGLVSELVL CGHKLEPLVL VQLSERYEQM 751 800 ENSP00000330098/1-539 ---------- ---------- ---------- SPS------- ------- ENSBTAP00000001141/1-534 ---------- ---------- ---------- SPS------- ------- ENSTTRP00000010856/1-428 ---------- ---------- ---------- PPS------- ------- bmy_07567T0/1-599 ---------- ---------- ---------- CPA------- ------- BACU001455/1-669 EYLGRHIARK LNINYFDCLA TSYRHVVRHW PPGAAVSPGI LLCETGA