KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 5 Type: P Thu May 15 16:13:24 2014 Check: 00 ..
Name: ENSTTRP00000016218/1-510 Len: 527 Check: 7973 Weight: 1.00
Name: ENSBTAP00000001147/1-486 Len: 527 Check: 3120 Weight: 1.00
Name: ENSP00000381634/1-487 Len: 527 Check: 4122 Weight: 1.00
Name: bmy_09836T0/1-356 Len: 527 Check: 9821 Weight: 1.00
Name: BACU007952/1-475 Len: 527 Check: 320 Weight: 1.00
//
1 50
ENSTTRP00000016218/1-510 MMHFKSGLEL TELQNMTVPE DDNISNDSNE FTEVENGQIN SKFISDRESR
ENSBTAP00000001147/1-486 MMHFKSGLEL TELQNMTVPE DDNISNDSND FTEVENGQIN SKFISDRESR
ENSP00000381634/1-487 MMHFKSGLEL TELQNMTVPE DDNISNDSND FTEVENGQIN SKFISDRESR
bmy_09836T0/1-356 ---------- ---------- ---------- ---------- ----------
BACU007952/1-475 MMHFKSGLEL TELQNMTVPE DDNISNDSND FTEVENGQIN SKFISDRESR
51 100
ENSTTRP00000016218/1-510 RSLTNSHLEK KKCDDYIPGT TSLGMSVFNL SNAIMGSGIL GLAFALANTG
ENSBTAP00000001147/1-486 RSLTNSHLEK KKCDDYIPGT TSLGMSVFNL SNAIMGSGIL GLAFALANTG
ENSP00000381634/1-487 RSLTNSHLEK KKCDEYIPGT TSLGMSVFNL SNAIMGSGIL GLAFALANTG
bmy_09836T0/1-356 ---------- ---------- ---------- ---------- ----------
BACU007952/1-475 RSLTNSHLEK KKCDDYIPGT TSLGMSVFNL SNAIMGSGIL GLAFALANTG
101 150
ENSTTRP00000016218/1-510 ILLF------ --LLSIYSIN LLLICSKRTG CMVYEKLGEQ VFGTTGKLVI
ENSBTAP00000001147/1-486 ILLFLVLLTS VTLLSIYSIN LLLICSKETG CMVYEKLGEQ VFGTTGKLVI
ENSP00000381634/1-487 ILLFLVLLTS VTLLSIYSIN LLLICSKETG CMVYEKLGEQ VFGTTGKFVI
bmy_09836T0/1-356 ---------- ---------- ---------- -MVYEKLGEQ VFGTTGKLVI
BACU007952/1-475 ILLFLVLLTS VTLLSIYSIN LLLICSKETG CMVYEKLGEQ VFGTTGKLVI
151 200
ENSTTRP00000016218/1-510 FGATSLQNTG AMLSYLFIVK NELPSAIKFL MGKEETFSAW YVDGRLLVVV
ENSBTAP00000001147/1-486 FGATSLQNTG AMLSYLFIVK NELPSAIKFL MGKEEEFSAW YVDGRLLVVV
ENSP00000381634/1-487 FGATSLQNTG AMLSYLFIVK NELPSAIKFL MGKEETFSAW YVDGRVLVVI
bmy_09836T0/1-356 FGATSLQNTG AMLSYLFIVK NELPSAIKFL MGKEETFSAW YVDGRLLVVV
BACU007952/1-475 FGATSLQNTG AMLSYLFIVK NELPSAIKFL MGKEETFSAW YVDGRLLVVV
201 250
ENSTTRP00000016218/1-510 VTFGIILPLC LLKNLGYLGY TSGFSLSCMV FFLIVVIYKK FQIPCIVSEL
ENSBTAP00000001147/1-486 VTFGIILPLC LLKNLGYLGY TSGFSLSCMV FFLIVVIYKK FKITCSVPEL
ENSP00000381634/1-487 VTFGIILPLC LLKNLGYLGY TSGFSLSCMV FFLIVVIYKK FQIPCIVPEL
bmy_09836T0/1-356 VTFGIILPLC LLKNLGYLGY TSGFSLSCMV FFLIVVIYKK FQIPCIVPEL
BACU007952/1-475 VTFGIILPLC LLKNLGYLGY TSGFSLSCMV FFLIVVIYKK FQIPCIVPEL
251 300
ENSTTRP00000016218/1-510 NSTISANSTN AGMCTPKYVT FNSKTVYALP TIAFAFVCHP SVLPIYSELK
ENSBTAP00000001147/1-486 NSTIP-NSTN PDMCTPKYVT FNSKTVYALP TIAFAFVCHP SVLPIYSELK
ENSP00000381634/1-487 NSTISANSTN ADTCTPKYVT FNSKTVYALP TIAFAFVCHP SVLPIYSELK
bmy_09836T0/1-356 NSTISANSTN AAMCTPKYVT FNSKTVYALP TIAFAFVCHP SVLPIYSELK
BACU007952/1-475 NSTISANSTN ADMCTPKYVT FNSKTVYALP TIAFAFVCHP SVLPIYSELK
301 350
ENSTTRP00000016218/1-510 DRSQKKMQMV SNISFFAMFV MYFLTAIFGY LTFYENVHSD LLHKYQSKDD
ENSBTAP00000001147/1-486 DRSQKKMQMV SNISFFAMFV MYFLTAIFGY LTFYESVQSD LLHKYQSKND
ENSP00000381634/1-487 DRSQKKMQMV SNISFFAMFV MYFLTAIFGY LTFYDNVQSD LLHKYQSKDD
bmy_09836T0/1-356 DRSQKKMQMV SNISFFAMFV MYFLTAIFGY LTFYENVHSD LLHKYQSKDD
BACU007952/1-475 DRSQKKMQMV SNISFFAMFV MYFLTAIFGY LTFYENVHSD LLHKYQSKDD
351 400
ENSTTRP00000016218/1-510 ILILTVRLAV IVAVILTVPV LFFTVRSSLF ELAKKTKFNL CRHVFVTFIL
ENSBTAP00000001147/1-486 ILILTVRLAV IMAVILTVPV LFFTVRSSLF ELAKKTKFNL CRQVLVTILL
ENSP00000381634/1-487 ILILTVRLAV IVAVILTVPV LFFTVRSSLF ELAKKTKFNL CRHTVVTCIL
bmy_09836T0/1-356 ILILTVRLAV IVAVILTVPV LFFTVRSSLF ELAKKTKFNL CRHVLVTFIL
BACU007952/1-475 ILILTVRLAV IVAVILTVPV LFFTVRSSLF ELAKKTKFNL CRHVLVTFIL
401 450
ENSTTRP00000016218/1-510 LVIINLLVIF IPSMKDIFGV VGVTSANMLI FILPSSLYLK ITKME-----
ENSBTAP00000001147/1-486 LVIINLLVIF IPSMKDIFGV VGVTSANMLI FILPSSLYLK ITSQDGDKGT
ENSP00000381634/1-487 LVVINLLVIF IPSMKDIFGV VGVTSANMLI FILPSSLYLK ITDQDGDKGT
bmy_09836T0/1-356 LVIINLLVIF IPSMKDIFGV VGVTSANMLI FILPSSLYLK ITSQDGDKGT
BACU007952/1-475 LVIINLLVIF IPSMKDIFGV VGVTSANMLI FILPSSLYLK IT--------
451 500
ENSTTRP00000016218/1-510 ----IKELNE FGLPFSWVWG WCFPWSAFPW LSTTGPAHQV VMRATETREK
ENSBTAP00000001147/1-486 QQIWAALFLG LGVLFSLV-- -SIPLVIYDW AYSS------ ----------
ENSP00000381634/1-487 QRIWAALFLG LGVLFSLV-- -SIPLVIYDW ACSS------ ----------
bmy_09836T0/1-356 QQIWAALFLG LGVLFSLV-- -SIPLVIYDW ACSS------ ----------
BACU007952/1-475 ----AALFLG LGVLFSLV-- -SIPLVIYDW ACSS------ ----------
501 550
ENSTTRP00000016218/1-510 ETSSYHSSAS PHRILCKFTE ANRNLQD
ENSBTAP00000001147/1-486 ------SGDE GH-------- -------
ENSP00000381634/1-487 ------SSDE GH-------- -------
bmy_09836T0/1-356 ------SGDE GH-------- -------
BACU007952/1-475 ------SGDE GH-------- -------