KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:13:26 2014 Check: 00 .. Name: ENSTTRP00000006749/1-600 Len: 603 Check: 1508 Weight: 1.00 Name: ENSP00000279027/1-602 Len: 603 Check: 9730 Weight: 1.00 Name: ENSBTAP00000001161/1-602 Len: 603 Check: 8291 Weight: 1.00 Name: bmy_06240T0/1-497 Len: 603 Check: 9782 Weight: 1.00 Name: BACU011360/1-601 Len: 603 Check: 2152 Weight: 1.00 // 1 50 ENSTTRP00000006749/1-600 -MAALATVAK KVWSARRLLV LLFTPLALLP VVFALPPKEG RCLFVILLMA ENSP00000279027/1-602 -MAALAAAAK KVWSARRLLV LLFTPLALLP VVFALPPKEG RCLFVILLMA ENSBTAP00000001161/1-602 -MAALATVAK KVWSARRLLV LLFTPLVLLP VVFALPPKEG RCLFVILLMA bmy_06240T0/1-497 MHVTVQSSDE LDEEARR--- ---------- ------PLEG RCLFVILLMA BACU011360/1-601 -MAALATVAK KVWSARRLLV LLFTPLALLP VVFALPPKEG RCLFVILLMA 51 100 ENSTTRP00000006749/1-600 VYWCTEALPL SVTALLPIIL FPFLGILPSN KVCAQYFLDT NFLFLSGLIM ENSP00000279027/1-602 VYWCTEALPL SVTALLPIVL FPFMGILPSN KVCPQYFLDT NFLFLSGLIM ENSBTAP00000001161/1-602 VYWCTEALPL SVTALLPIVL FPFLGILPSN KVCAQYFLDT NFLFLSGLIM bmy_06240T0/1-497 VYWCTEALPL SVTALLPIIL FPFLGILPSN KVCAQYFLDT NFLFLSGLIM BACU011360/1-601 VYWCTEALPL SVTALLPIIL FPFLGILPSN KVCAQYFLDT NFLFLSGLIM 101 150 ENSTTRP00000006749/1-600 ASAIEEWNLH RRIALKVLML TGVQPARLIL GMMVTTSFLS MWLSNTASTA ENSP00000279027/1-602 ASAIEEWNLH RRIALKILML VGVQPARLIL GMMVTTSFLS MWLSNTASTA ENSBTAP00000001161/1-602 ASAIEEWNLH RRIALKVLML TGVQPARLIL GMMATTSFLS MWLSNTASTA bmy_06240T0/1-497 ASAIEEWNLH RRIALKVLML TGVQPARLIL GMMVTTSFLS MWLSNTASTA BACU011360/1-601 ASAIEEWNLH RRIALKVLML TGVQPARLIL GMMVTTSFLS MWLSNTASTA 151 200 ENSTTRP00000006749/1-600 MMLPIASAIL KSLFD-QEVR KDLSWESEEK AAAVRKNGLH TVPTEMQFIA ENSP00000279027/1-602 MMLPIANAIL KSLFGQKEVR KDPSQESEEN TAAVRRNGLH TVPTEMQFLA ENSBTAP00000001161/1-602 MMLPIANAIL KSLFGHRESH KDLSWESEET AAAVRKNGLH TVPTEMQFIA bmy_06240T0/1-497 MMLPIASAIL KSLFG-QEVR KDLSWESEEK AAAVRKNGLH TVPTEMQFIA BACU011360/1-601 MMLPIASAIL KSLFG-QEVR KDLSWESEEK AAAVRKNGLH TVPTEMQFIA 201 250 ENSTTRP00000006749/1-600 GTEDKDCPEE AEAPTDLQAN S-KEEEYRRN IWKGFLISIP YSASIGGTAT ENSP00000279027/1-602 STEAKDHPGE TEVPLDLPAD SRKEDEYRRN IWKGFLISIP YSASIGGTAT ENSBTAP00000001161/1-602 GTEDKDCPEE AEAPTDLHPT SKKEEEYRRN IWKGFLISIP YSASIGGTAT bmy_06240T0/1-497 GTED------ ---------- ---------- ---------- ---------- BACU011360/1-601 GTEDKDCPEE AEAPADLQAN SKKEEEYRRN IWKGFLISIP YSASIGGTAT 251 300 ENSTTRP00000006749/1-600 LTGTAPNLIL LGQLKSFFPQ CDVVNFGSWF VFAFPLMLMF LLVGWLWISF ENSP00000279027/1-602 LTGTAPNLIL LGQLKSFFPQ CDVVNFGSWF IFAFPLMLLF LLAGWLWISF ENSBTAP00000001161/1-602 LTGTAPNLIL LGQLKSFFPQ CDVVNFGSWF IFAFPLMLLF LLVGWLWISF bmy_06240T0/1-497 ---------- ------FFPQ CDVVNFGSWF IFAFPLMLMF LLVGWLWISF BACU011360/1-601 LTGTAPNLIL LGQLKSFFPQ CDVVNFGSWF IFAFPLMLMF LLVGWLWISF 301 350 ENSTTRP00000006749/1-600 LYGGITLRGW RKKKSEIRSD AESRARAMIQ EEFQNLGPIX XXXXXXXXXX ENSP00000279027/1-602 LYGGLSFRGW RKNKSEIRTN AEDRARAVIR EEYQNLGPIK FAEQAVFILF ENSBTAP00000001161/1-602 LYGGITLRGW RKKKSELRTD AEKRARDTIR EEFQSLGPIK FAEQAVFILF bmy_06240T0/1-497 LYGGITLRGW RKKKSEIRSD AENRARAMIQ EEFQNLGPIK FAEQAVFILF BACU011360/1-601 LYGGITLRGW RKKKSEIRSD AENRARAMIQ EEFQNLGPIK FAEQAVFILF 351 400 ENSTTRP00000006749/1-600 XXXXXXXXXX XXXXXXXXXX XXXXXFISDA VTGVSIVTVL FFFPSQKPSL ENSP00000279027/1-602 CMFAILLFTR DPKFIPGWAS LFNPGFLSDA VTGVAIVTIL FFFPSQRPSL ENSBTAP00000001161/1-602 CVFAILLFSR DPKFIPGWAS LFTPGFISDA VTGVSVVTIL FFFPSQKPSL bmy_06240T0/1-497 CIFAILLFSR DPKFIPGWAS LFTPGFISDA VTGVSIVTIL FFFPSQKPSL BACU011360/1-601 CIFAILLFSR DPKFIPGWAS LFTPGFISDA VTGVSIVTIL FFFPSQKPSL 401 450 ENSTTRP00000006749/1-600 KWWFDFKAPN TETEPLLTWK KAQDTVPWNI ILLLGGGFAM AKGCEXXXXX ENSP00000279027/1-602 KWWFDFKAPN TETEPLLTWK KAQETVPWNI ILLLGGGFAM AKGCEESGLS ENSBTAP00000001161/1-602 KWWFDFKAPN TETVPLLTWK RAQDTVPWNI ILLLGGGFAM AKGCEESGLS bmy_06240T0/1-497 KWWFDFKAPN TETEPLLTWK KAQDTVPWNI ILLLGGGFAM AKGCEESGLS BACU011360/1-601 KWWFDFKAPN TETEPLLTWK KAQDTVPWNI ILLLGGGFAM AKGCEESGLS 451 500 ENSTTRP00000006749/1-600 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXA ENSP00000279027/1-602 VWIGGQLHPL ENVPPALAVL LITVVIAFFT EFASNTATII IFLPVLAELA ENSBTAP00000001161/1-602 AWIGGQLHPL ESVPPVLAVL LITVVVAFFT EFASNTATII IFLPVLAELA bmy_06240T0/1-497 AWIGGQLHPL EKVPPVLAVL LITVVVAFFT EFASNTATII IFLPVLAELA BACU011360/1-601 AWIGGQLHPL EKVPPVLAVL LITVVVAFFT EFASNTATIV IFLPVLAELA 501 550 ENSTTRP00000006749/1-600 IRLRVHPLYL MIPGTVGCSY AFMLPVSTPP NSIAFASGHL LVKDMARTGL ENSP00000279027/1-602 IRLRVHPLYL MIPGTVGCSF AFMLPVSTPP NSIAFASGHL LVKDMVRTGL ENSBTAP00000001161/1-602 IRLRVHPLYL MIPGTVGCSY AFMLPVSTPP NSIAFASGHL LVKDMVRTGL bmy_06240T0/1-497 IRLRVHPLYL MIPGTVGCSY AFMLPVSTPP NSIAFASGHL LVKDM----- BACU011360/1-601 IRLRVHPLYL MIPGTVGCSY AFMLPVSTPP NSIAFASGHL LVKDMARTGL 551 600 ENSTTRP00000006749/1-600 LMNVMGVLLL SLAMNTWAQT IFQLGTFPDW ANIHLSNVTA LPSTLANDTF ENSP00000279027/1-602 LMNLMGVLLL SLAMNTWAQT IFQLGTFPDW ADMYSVNVTA LPPTLANDTF ENSBTAP00000001161/1-602 LMNLMGVLLL SLAMNTWAQT IFQLGTFPEW ADLHLANVTA LPSSLANGTY bmy_06240T0/1-497 ---------- ---------T IFQLGTFPDW ANIHLTNVTA LPSTLANDTF BACU011360/1-601 LMNVMGVLLL SLAMNTWAQT IFQLGTFPDW ANLHLTNVTA LPSTLANDTF 601 650 ENSTTRP00000006749/1-600 QTL ENSP00000279027/1-602 RTL ENSBTAP00000001161/1-602 RTL bmy_06240T0/1-497 QTL BACU011360/1-601 QTL