KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:13:26 2014 Check: 00 .. Name: ENSP00000400376/1-960 Len: 960 Check: 7711 Weight: 1.00 Name: ENSBTAP00000001164/1-954 Len: 960 Check: 2373 Weight: 1.00 Name: ENSTTRP00000002766/1-926 Len: 960 Check: 7913 Weight: 1.00 Name: bmy_07460T0/1-952 Len: 960 Check: 4789 Weight: 1.00 Name: BACU017798/1-902 Len: 960 Check: 5992 Weight: 1.00 // 1 50 ENSP00000400376/1-960 MFHSSAMVNS HRKPMFNIHR GFYCLTAILP QICICSQFSV PSSYHFTEDP ENSBTAP00000001164/1-954 ------MANS CRKLIFNIYV VFYCSAVIMP QICICSQFTS SPIDQFNKDP ENSTTRP00000002766/1-926 VFHSAVMANS HRKLIFNISI GFYCSAVI-- QICICSQFTS SSIDQFNKDR bmy_07460T0/1-952 ------MANS RRKLIFNIYI GFYCSAVI-- QICICSQFTS SSIDQFNKDR BACU017798/1-902 VFHSAVMANS RRKLIFNIYI GFYCSAVI-- QICICSQFTS SSIDPFNKDR 51 100 ENSP00000400376/1-960 GAFPVATNGE RFPWQELRLP SVVIPLHYDL FVHPNLTSLD FVASEKIEVL ENSBTAP00000001164/1-954 KAFPVATNGE IFPWHELRLP TVVIPLHYDL LIHPNLTSLD FVASEKIEVL ENSTTRP00000002766/1-926 GAFPVAINGE IFPWHELRLP TMVIPLHYDL FVHPNLTSLD FVASEKIEVL bmy_07460T0/1-952 GAFPVATNGE IFPWRELRLP TMVIPLHYDL XVHPNLTSLD FVASEKIEVL BACU017798/1-902 GAFPVATNGE IFPWCELRLP TMVIPLHYDL FVHPNLTSLD FVASEKIEVL 101 150 ENSP00000400376/1-960 VSNATQFIIL HSKDLEITNA TLQSEEDSRY MKPGKELKVL SYPAHEQIAL ENSBTAP00000001164/1-954 VRDATQFIIL HSKDLEILNA SLQSEEDVRY KKPGENLTVL SYPAHQQIAL ENSTTRP00000002766/1-926 VRDATQFIIL HSKDLEIMNV TLQSEEDLRY RRPGRKLTVL SYPAHEQIAL bmy_07460T0/1-952 VQDATQFIIL HSKDLEIMNA TLQSEEDLRY RKPGEKLTVL SYPAHEQIAL BACU017798/1-902 VRDATQFIIL HSKDLEIMNA TLQSEEDLRY RKPGEKLTVL SYPAHEQIAL 151 200 ENSP00000400376/1-960 LVPEKLTPHL KYYVAMDFQA KLGDGFEGFY KSTYRTLGGE TRILAVTDFE ENSBTAP00000001164/1-954 LVPEKLRAHL RYSVAIDFQA KLADGFEGFY KSTYRTLGGE TRTIAVTDFE ENSTTRP00000002766/1-926 LIPEKLTADL RYSVTIDFQA KLADGFEGFY KSTYRTLGGE TRTIAVTDFE bmy_07460T0/1-952 LVPEKLMADL RYSVAXDFQA KLADGFEGFY KSTYRTLGGE TRTIAVTDFE BACU017798/1-902 LVPEKLMADL RYSVAIDFQA KLADGFEGFY KSTYRTLGGE TRTIAVTDFE 201 250 ENSP00000400376/1-960 PTQARMAFPC FDEPLFKANF SIKIRRESRH IALSNMPKVK TIELEGGLLE ENSBTAP00000001164/1-954 PTEARMAFPC FDEPLFKANF SIKIRRESRH IALSNMPKVK TIELEGGLLE ENSTTRP00000002766/1-926 PTQARMAFPC FDEPLFKANF SIKIRRESRH IALSNMPKVK TIELEGGLLE bmy_07460T0/1-952 PTQARMAFPC FDEPLFKANF SIKIRRESRH IALSNMPKVK TIELEGGLLE BACU017798/1-902 PTQARMAFPC FDEPLFKANF SIKIRRESRH IALSNMPKVK TIELEGGLLE 251 300 ENSP00000400376/1-960 DHFETTVKMS TYLVAYIVCD FHSLSGFTSS GVKVSIYASP DKRNQTHYAL ENSBTAP00000001164/1-954 DHFETTVRMS TYLVAYIVCD FTSVSGTASS GVKVSIYASP DKWSQTHYAL ENSTTRP00000002766/1-926 DHFETTVKMS TYLVAYIVCD FNSVSGTASS GVKVSIHAAP DKWSQTHYAL bmy_07460T0/1-952 DHFETTVKMS TYLVAYIVCD FNSVSGTASS GVKVSIHAAP DKWSQTHYAL BACU017798/1-902 DHFETTVKMS TYLVAYIVCD FNSVSGTASS GVKVSIHAAP DKWSQTHYAL 301 350 ENSP00000400376/1-960 QASLKLLDFY EKYFDIYYPL SKLDLIAIPD FAPGAMENWG LITYRETSLL ENSBTAP00000001164/1-954 EASVKLLDFY ENYFDIHYPL PKLDLVAIPD FASGAMENWG LITYRETSLL ENSTTRP00000002766/1-926 EASLKLLDFY ENYFDIHYPL AKLDLVAIPD FESGAMENWG LVTYRETSLL bmy_07460T0/1-952 EASLKLXDFY ENYFDIHYPL AKLDLVAIPD FESGAMENWG LVTCRETSLL BACU017798/1-902 EASLKLLDFY ENYFDIHYPL AKLDLVAIPD FESGAMENWG LVTCRETSLL 351 400 ENSP00000400376/1-960 FDPKTSSASD KLWVTRVIAH ELAHQWFGNL VTMEWWNDIW LKEGFAKYME ENSBTAP00000001164/1-954 FDPKTSSTSD KLWVTKVIAH ELAHQWFGNL VTMEWWNDIW LNEGFARYME ENSTTRP00000002766/1-926 FDPKTSSTSD KLWVTRVIAH ELAHQWFGNL VTMEWWNDIW LNEGFATYME bmy_07460T0/1-952 FDPKTSSTSD KLWVTKVIAH ELAHQWFGNL VTMXWWNDIW LNEGFATYME BACU017798/1-902 FDPKTSSTSD KLWVTKVIAH ELAHQWFGNL VTMEWWNDIW LNEGFATYME 401 450 ENSP00000400376/1-960 LIAVNATYPE LQFDDYFLNV CFEVITKDSL NSSRPISKPA ETPTQIQEMF ENSBTAP00000001164/1-954 LISLNITYPE LQFDDSFSNT CFEVIKRDSL NSSHPISNEA KTATQIKEMF ENSTTRP00000002766/1-926 LISVNVTYPE LQFDDDFLDM CFEVIKRDSL NSSHPLSNQA ETSTHIKEMF bmy_07460T0/1-952 LISVNVTYPE LQFDDDFLNM CFEVIKRDSL NSSRPISNQA ETSTQIKEMF BACU017798/1-902 LISVNVTYPE LQFDDDFLNM CFEVIKRDSL NSSRPISNQA ETSTQIKEMF 451 500 ENSP00000400376/1-960 DEVSYNKGAC ILNMLKDFLG EEKFQKGIIQ YLKKFSYRNA KNDDLWSSLS ENSBTAP00000001164/1-954 DAVSYNKGAC ILNMLKDFLS EETFRKGIIH YLKKFTYRNA KNDDLWHSLS ENSTTRP00000002766/1-926 DAVSYKKGAC ILNMLKDFLS EEKFKKGIIR YLKKFSYRNA KNDDLWSSLS bmy_07460T0/1-952 DAVSYKKGAC ILNMLKDFLS EEKFKKGXIH YLKKFSYRNA KNDDLWSSLS BACU017798/1-902 DALSYEKGAC ILNMLKDFLS EEKFKKGIIH YLKKFSYRNA KNDDLWSSLS 501 550 ENSP00000400376/1-960 NSCLESDFTS GGVCHSDPKM TSNMLAFLGE NAEVKEMMTT WTLQKGIPLL ENSBTAP00000001164/1-954 NNCLEGDSTS GGFCYSDSRK TSNTLAFLRE NVELKEMMAT WTLQKGIPLV ENSTTRP00000002766/1-926 DDCLESDSTS GGFCYSDSKT ASNTLTFLRE NVEVKQMMAT WTLQKGIPLV bmy_07460T0/1-952 NDCLESXSTS GGFCYSDSKT TSSTLAFLRE NVEVKQMMAT WTLQKGIPLV BACU017798/1-902 NDCLESDSAS GGFCYSDSKT TSSTLAFLRE NVEVKQMMAT WTLQKGIPLV 551 600 ENSP00000400376/1-960 VVKQDGCSLR LQQERFLQGV FQEDPEWRAL QERYLWHIPL TYSTSSSNVI ENSBTAP00000001164/1-954 VVKREGRSLR LQQERFLSGV FKEDPEWGTL QERYLWHIPV TYSTSSSQAI ENSTTRP00000002766/1-926 VVNREGRSLR LQQERFLNGV FKEDPEWGAL QERYLWHIPV TYSTSSSNAI bmy_07460T0/1-952 VVNREGRSLR LQQERFLNGV FKEDPGWGAL QERYLWRIPV TYSTGSSNAI BACU017798/1-902 VVNREGRSLR LQQERFLNGV FKEDPGWGAL QERYLWHIPV TYSTSSSNAI 601 650 ENSP00000400376/1-960 HRHILKSKTD TLDLPEKTSW VKFNVDSNGY YIVHYEGHGW DQLITQLNQN ENSBTAP00000001164/1-954 HRHILKLKTD TVDLSEKTDW VKFNVDSSGY YIVHYEGQGW DELITLLNQN ENSTTRP00000002766/1-926 HRHILKSKTD TLDLPEKTSW VKFNVDSNGY YIVHYEGRGW DQLITQLNQN bmy_07460T0/1-952 HRHILKSKTD TLDLPEKTSW VKFNVDSNGY YIVHYEGHGW DQFITLLNQN BACU017798/1-902 HRHILKSKTD TLDLPEKTSW VKFNVDSNGY YIVHYEGHGW DQLITLLNQN 651 700 ENSP00000400376/1-960 HTLLRPKDRV GLIHDVFQLV GAGRLTLDKA LDMTYYLQHE TSSPALLEGL ENSBTAP00000001164/1-954 HTLLRPKDRL GLIHDAFQLV SAGRLTLDKA LDLTRYLQHE TSIPALLKGL ENSTTRP00000002766/1-926 HTFLRPKDRI SLIHDAFQLV SAGRLTLDKA LDLTRYLQHE TSIPALLKGL bmy_07460T0/1-952 HTLLRPKDRI SLIHDAFQLV SAGRLTLDKA LDLTRYLQHE TSIPALLKGL BACU017798/1-902 HTLLRPKDRI SLIHDALQLV SAGRLTLDKA LDLTRYLQHE TSIPALLKGL 701 750 ENSP00000400376/1-960 SYLESFYHMM DRRNISDISE NLKRYLLQYF KPVIDRQSWS DKGSVWDRML ENSBTAP00000001164/1-954 EYLELFYRMV ERRNISDVTE NLKHYLLQYF KPVIDTQSWL DEGSVWDRML ENSTTRP00000002766/1-926 EYLELFYHIT ERRNVSDVTE NLKHYLLQYF KPVIDMQSWC DEGSVWDRRL bmy_07460T0/1-952 EYLELFYHIL ERRNVSDVTE NLKHYLLQYF KPAIDTQSWH DEGSVWDRRL BACU017798/1-902 EYLELFYHIV ERRNVSDVTE NLKHYLLQYF KPAIDMQSWH DEGSVWDRRL 751 800 ENSP00000400376/1-960 RSALLKLACD LNHAPCIQKA AELFSQWMES SGKLNIPTDV LKIVYSVGAQ ENSBTAP00000001164/1-954 RSTVLKLACY LNHAPCIQKA TELFSQWMES SGKLNIPADV LTIVYSVGAQ ENSTTRP00000002766/1-926 RSALLKLACY LNHAPCIQKA TELFSQWMES SGKLNIPTDV LKIVYSVGAQ bmy_07460T0/1-952 RSALLKLACY LNHAPCIQKA TELFSQWMES SGKLNIPTDV LKIVYSVGAQ BACU017798/1-902 RSALLKLACY LNHAPCIQKA TELFSQWMES SGKLNIPTDV LKIVYSVGAQ 801 850 ENSP00000400376/1-960 TTAGWNYLLE QYELSMSSAE QNKILYALST SKHQEKLLKL IELGMEGKVI ENSBTAP00000001164/1-954 TTAGWNYLLE QYELSLSGAE KNKILYALST SKHQEKLMKL IELGMEGKVI ENSTTRP00000002766/1-926 TTAGWNYLLE QYELSLSGAE KNKILYALST SKHQEKLMKL IELGMEGKVI bmy_07460T0/1-952 TTAGWNYLLE QYELSLSGAE KNKILYALST SKHQEKLMKL IELGMEGKVI BACU017798/1-902 TTAGWNYLLE QYELSLSGAE KNKILYALST SKHQEKLMKL IELGMEGKVI 851 900 ENSP00000400376/1-960 KTQNLAALLH AIARRPKGQQ LAWDFVRENW THLLKKFDLG SYDIRMIISG ENSBTAP00000001164/1-954 KTQDLATLLF TTARNPKGQQ LAWNFVKENW THLLKKFELG SFPIRMIISG ENSTTRP00000002766/1-926 KTQDLAPLLH AIARNPKGQQ LAWNFVKENW IHLLKKFELG SFPIRMIISG bmy_07460T0/1-952 KTQDLAALLH AITRNPKGQQ LAWNFVKENW IHLLKKFELG SFPIRMIISG BACU017798/1-902 KTQDLAALLH AIARNPKGQQ LAWNFVKENW IHLLKKLVFV YIQC------ 901 950 ENSP00000400376/1-960 TTAHFSSKDK LQEVKLFFES LEAQGSHLDI FQTVLETITK NIKWLEKNLP ENSBTAP00000001164/1-954 TTSHFSSKDE LQEVKLFFES LKAQGSHLDI FQIILETISK NIKWLEKNLP ENSTTRP00000002766/1-926 TTSHFSSKDE LQEVKLFYES LKAHGSHL-- ---------- ---------- bmy_07460T0/1-952 TTSHFSSKDE LQEVKLFFES LKAQGSHLEI FQIVLETISK NIKWLEKNLP BACU017798/1-902 ---------- -----VFF-- ------HPDI SVA------- ---------- 951 1000 ENSP00000400376/1-960 TLRTWLMVNT ENSBTAP00000001164/1-954 TLRKWLLTSI ENSTTRP00000002766/1-926 ---------- bmy_07460T0/1-952 TLRNWLLISI BACU017798/1-902 ----------