KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:13:27 2014 Check: 00 .. Name: ENSP00000393583/1-1080 Len: 1219 Check: 3024 Weight: 1.00 Name: ENSBTAP00000001166/1-1053 Len: 1219 Check: 1557 Weight: 1.00 Name: ENSTTRP00000016377/1-1069 Len: 1219 Check: 4492 Weight: 1.00 Name: bmy_02273T0/1-1125 Len: 1219 Check: 7266 Weight: 1.00 Name: BACU011607/1-1144 Len: 1219 Check: 6644 Weight: 1.00 // 1 50 ENSP00000393583/1-1080 MKGTRAIGS- --VPERSPAG VDLSLTGLPP PVSRRPGSAA TTKPIVRSVS ENSBTAP00000001166/1-1053 MKGSRALSG- ---PEGSLEG VDLSLTGLPP PMNRRPNSAS ATKPITRSIS ENSTTRP00000016377/1-1069 MKGSRALSGP SGPPEGSPES MDLSLTGLPP PMSRRPNSAS TAKPIARSIS bmy_02273T0/1-1125 MKGSRALSGP SGPPEGSPES MDLSLTGLPP PMSRRPNSAS TAKPIARSIS BACU011607/1-1144 MKGSRALSGP SGPPEGSPES MDLSLTGLPP PMSRRPNSAS TAKPIARSIS 51 100 ENSP00000393583/1-1080 VVTGSEQKRK VLEATGPGGS QAINNLRRSN STTQVSQPRS -----GSPRP ENSBTAP00000001166/1-1053 VVTGNEPRRK LLENPGPGGS RAINNLRRSN SATQVNQPQA NQAWPSPLRP ENSTTRP00000016377/1-1069 VVTGSEPRRK MLEAPGPGGS RAISNLRRSN SATQVNQPQA --------RP bmy_02273T0/1-1125 MVTGSEPRRK MLEAPGPGGS RAVSNLRRSN SATQVNQPQA NQAWPGPLRP BACU011607/1-1144 VVTGSEPRRK MLEAPGPGGS RAVSNLRRSN SATQVNQPQA SQAWPGPLRP 101 150 ENSP00000393583/1-1080 TEPTDFLMLF EGSPSGKKRP ASLSTAPSEK GATWNVLDDQ PRGFTLPSNA ENSBTAP00000001166/1-1053 AEPPDFLTLF EGSPSGRKRP ASLSKASSEK GATWNVLDDR PRAFTLPSDA ENSTTRP00000016377/1-1069 EEPPDFLTLF EGSPGGRKRP AGLSKASSEK GATWNVLDDQ PXXXXXXXXX bmy_02273T0/1-1125 EEPPDFLTLF EGSPGGRKRP ASLSKASSEK GATWNVLDDQ PRAFTLPPDA BACU011607/1-1144 EEPPDFLTLF EGSPGGRKRP ASLSKASSEK GATWNVLDDQ PRAFTLPPDA 151 200 ENSP00000393583/1-1080 RSSSALDSPA GPRRKECTVA LAPNFTANNR SNKGAVGNCV TTMVHNRYTP ENSBTAP00000001166/1-1053 QSPGALDVPV GPRRRECMVP LAPNFTANNR SNKGAVGNCV TTMVHNHYTP ENSTTRP00000016377/1-1069 XSPGTLDWPV GPREKKCTVP LAPNFTANNR SNKGAVGNCV TTMVHNHYTP bmy_02273T0/1-1125 QSPGTLDVLV GPRRRECTVP LAPNFTANNR SNKGAVGNCV TTMVHNHYTP BACU011607/1-1144 QSPGTLDVLV GPRRRECTVP LAPNFTANNR SNKGAVGNCV TTMVHNHYTP 201 250 ENSP00000393583/1-1080 SERA-PPLKS SNQTAPSLNN IIKAATCEGS ESSGFGKLPK NVSSATHSAR ENSBTAP00000001166/1-1053 SERVPPPPKS SNRTAPSLNN IIKAATDEG- EGSSLGKPQK NVARSNHVVQ ENSTTRP00000016377/1-1069 SEKV-PPPKS SNHMAPSLNN IIKAATDEG- EGSSHGKPQK NAARSNHTVQ bmy_02273T0/1-1125 SEKV-PPPKS SNHMAPSLNN IIKAATDEG- EGNSLGKLQK NAARSNHTVQ BACU011607/1-1144 SEKV-PPPKS SNHMAPSLNN IIKAATDEG- EGGSLGKPQK NAARSNHTVQ 251 300 ENSP00000393583/1-1080 NNTGGSTGLP RRKEVTEEEA ERFIHQVNQA TVTIQRWYRH QVQRRGAGAA ENSBTAP00000001166/1-1053 NNSGGTTGLL RRKEVTEEEA ERFIHQVNQA AVTIQRWYRH QVQRRRAGAA ENSTTRP00000016377/1-1069 NNSGGTAGQL RRKEVTEEEA ERFIHQVNQA AITIQRWYRH QVQRRRAGAA bmy_02273T0/1-1125 NNSGGTAGQL RRKEVTEEEA ERFIHQVNQA AITIQRWYRH QVQRRRAGAT BACU011607/1-1144 NNSGGTAGQL RRKEVTEEEA ERFIHQVNQA AITIQRWYRH QVQQRRAGAA 301 350 ENSP00000393583/1-1080 RLEHLLQAKR EEQRQRSGEG TLLDLHQQKE AARRKAREEK ARQARRAAIQ ENSBTAP00000001166/1-1053 RLERLLASKR EGQRQRLGEG SLLDQHQQRE AARRKAREEK ARQARRAAIQ ENSTTRP00000016377/1-1069 CLEHLLASKQ EGQRQRLGEG TLLDRHQQKE VARRKAREEK ARQARRAAIQ bmy_02273T0/1-1125 RLEHLLASKQ EGQRQRLGEG TLLDQHQQKE VARRKAREEK ARQARRAAIQ BACU011607/1-1144 RLEHLLASKR EGQRQRLGEG TLLDQHQQKE VARRKAREEK ARQARRAAIQ 351 400 ENSP00000393583/1-1080 ELQQKRALRA QKASTAERGP PENPRETRVP GMRQPAQELS PTPGGTAHQA ENSBTAP00000001166/1-1053 ELQQK---RA QKSGNADLGL LKGMGETEKP ---QPTQEPA MRPGSTTQQT ENSTTRP00000016377/1-1069 ELQQK---RA QKSGNADLGL LKGPGEPGKP ---QTTQEPS LRPGSAAQQT bmy_02273T0/1-1125 ELQQK---RA QKSGNADRGL LKRPGETGKP ---QTTQEPT LRPGSAAQQT BACU011607/1-1144 ELQQK---RA QKSGNADRGL LKRPGETGKP ---QTTQEPT LRPGSAAQQT 401 450 ENSP00000393583/1-1080 LKANNTGGGL PAAGPGDRCL PTSDSSPEPQ QPPEDRTQDV LAQDAAGDNL ENSBTAP00000001166/1-1053 RKANNTGASF HTAGSEDAGQ PALGSSPEPR QLSEDKPQDA SLQDVPGEGL ENSTTRP00000016377/1-1069 RKANNTGAGL RTAGPEDPCQ PARDSSPEPR QLPEDKPQDA SSQDVAGEGL bmy_02273T0/1-1125 RKANNTG--- ---------- ---------- ------EQDA SSQDVAGEGL BACU011607/1-1144 RKANNTGAGL RTAGPEDPCQ PAHDSSPEPR QLPEDKPQDA SSQDVAGEGL 451 500 ENSP00000393583/1-1080 EMMAPSRGSA KSRGPLEELL HTLQLLEKEP DVLPRPRTHH RGRYAWASE- ENSBTAP00000001166/1-1053 EGMGRAGSRA KSKATLDELL DTLKLLEQEP EPLPCPRAYH KDKYAWTDE- ENSTTRP00000016377/1-1069 EALGPAGSRA KSRATLDELL DTLKLLEQEP EPLPRPQAYH KDKYAWTDEV bmy_02273T0/1-1125 EALGPAGSRA KSRATLDELL DTLKLLEQEP EPLPHPQAYH KNKYAWTDE- BACU011607/1-1144 EALGPAGSRA KSRATLDELL DTLKLLEQEP EPLPRPEAYH KDKYAWTDE- 501 550 ENSP00000393583/1-1080 --EDDASSLT ADNLEKFGKL SAFPEPPEDG TLLSEAKLQS IMSFLDEMEK ENSBTAP00000001166/1-1053 --EDDASSLT ADNLEKFGKL SAAAGPPEDG TLLSEAKLQS IMNFLDEMEK ENSTTRP00000016377/1-1069 TVEDDSSSLT ADNLEKFGKL SVAACPREDG PLLSEAKLQS IMSFLDEMEK bmy_02273T0/1-1125 --EDDSSSLT ADNLEKFGKL SVAACPREDG TLLSEAKLQS IMSFLDEMEK BACU011607/1-1144 --EDDSSSLT ADNLEKFGKL SVAACPREDG TLLSEAKLQS IMSFLDEMEK 551 600 ENSP00000393583/1-1080 SGQDQLDSQQ EGWVPEAGPG PLELGSEVST SVMRLKLEVE EKKQAMLLLQ ENSBTAP00000001166/1-1053 SGQGRPASAP QGPMPEEGLG RLEPASEVST SVMRLQLEVE EKKQAMVLLQ ENSTTRP00000016377/1-1069 SGQGPP---- -GPVPEEGLG RLEPASEVST SVMRLQLEVE EKKQAMVLLQ bmy_02273T0/1-1125 SGQGLPASAP QGPMPEEGLG RLEPASEVST SVMRLQLEVE EKKQAMVLLQ BACU011607/1-1144 SGQGPPASAP QGPMPEEGLG RLEPASEVST SVMRLQLEVE EKKQAMVLLQ 601 650 ENSP00000393583/1-1080 RALAQQRDLT ARRVKETEKA LSRQLQRQRE HYEATIQRHL AFIDQLIEDK ENSBTAP00000001166/1-1053 RALAQQRDLT FRRVKETERE LGRQLRQQKE HYEATIRRHL SFIDQLIEDK ENSTTRP00000016377/1-1069 RALAQQRDLT IRRVKETEKE LGRQLRQQKE HYEATIQRHL SFIDQLIEDK bmy_02273T0/1-1125 RALAQQRDLT IRRVKETEKE LGRQLRQQKE HYEATVQRHL SFIDQLIEDK BACU011607/1-1144 RALAQQRDLT IRRVKETEKE LGRQLRQQKE HYEATIQRHL SFIDQLIEDK 651 700 ENSP00000393583/1-1080 KVLSEKCEAV VAELKQEDQR CTERVAQAQA QHELEIKKLK ELMSATEKAR ENSBTAP00000001166/1-1053 KALGEKCEAL VAELKLGDQR RKDREAQLQE QHELEIKKLK ELMSATEKVR ENSTTRP00000016377/1-1069 KALGEKCEAL VAELKQGDQR LKDKEAQMRE QHELEIKKLK ELMSATEKVR bmy_02273T0/1-1125 KALGEKCEAL VAELKQRDQR LKDKEAQMQE QHELEIKKLK ELMSATEKVR BACU011607/1-1144 KALGEKCEAL VAELKQGDQR LKDKEAQMQE QHELEIKKLK ELMSATEKVR 701 750 ENSP00000393583/1-1080 REKWISEKTK KIKEVTVRGL EPEIQKLIAR HKQEVRRLKS LHEAELLQSD ENSBTAP00000001166/1-1053 REKWINEKTR KIKEITVKGL EPEIQKLIAK HKQEVKKLKG LHATELLQAE ENSTTRP00000016377/1-1069 REKWINEKTR KIKEITVKGL EPEIQKLIAK HKQEVKKLKS LHAVELLQAD bmy_02273T0/1-1125 REKWINEKTR KIKEITVKGL EPEIQKLIAK HKQEVKKLKS LHAVELLQAD BACU011607/1-1144 REKWINEKTQ KIKEITVKGL EPEIQKLITK HKQEVKKLKS LHAVELLQAD 751 800 ENSP00000393583/1-1080 ERASQRCLRQ AEELREQLER EKEALGQQER ERARQRFQQH LEQEQWALQQ ENSBTAP00000001166/1-1053 ERAAQHYGRQ AEELREHLER EKEALGRQEW ERAQQ----- ---------- ENSTTRP00000016377/1-1069 ERAAQRYGRQ AEELREHLER EKEALGRQEW ERAQQRFEQH LEQEQRALQQ bmy_02273T0/1-1125 ERAAQRYGRQ AEELREHLER EKEALGRQEW ERAQQRFEQH LEQEQRALQQ BACU011607/1-1144 ERAAQRYGRQ AEELREHLER EKEALGRQEW ERAQQRFEQH LEQEQRALQQ 801 850 ENSP00000393583/1-1080 QRQRLYSEVA EERERLGQQA ARQRAELEEL RQQLEESSSA LTRALRAEFE ENSBTAP00000001166/1-1053 ---------- ---------- -RQRAELDEL RRQLEESSSA GGRALRAEFE ENSTTRP00000016377/1-1069 HRRRLYNEVA EEKERLGQQA ARQRAELDEL RRQLEESSSA GGRALRAEFE bmy_02273T0/1-1125 QRRRLYNEVA EEKERLGQQA ARQRAELDEL RQQLEESSSA GGRALRAEFE BACU011607/1-1144 QRRRLYNEPS PALQNWPLLT CRQRAELDEL RQQLEESSSA GGRALRAEFE 851 900 ENSP00000393583/1-1080 KGREEQERRH ---------- ---------- ---------- -------QME ENSBTAP00000001166/1-1053 KGKEEQERRH ---------- ---------- ---------- -------QME ENSTTRP00000016377/1-1069 KGREEQERRH ---------- ---------- ---------- -------QME bmy_02273T0/1-1125 KGREEQERRH QLTTDPQLDR RPRPGSCRHC PGWGAASGGC YHTVTCPQME BACU011607/1-1144 KGREEQERRH ---------- ---------- ---------- -------QEX 901 950 ENSP00000393583/1-1080 LNTLKQQLEL ERQAWEAGRT RKEEAWLLNR EQELREEIRK GRDKEIELVI ENSBTAP00000001166/1-1053 LKALKDQLEV ERQMWEANSA KKEEAWLLNR ERELKEEIRK GRDKEIELVI ENSTTRP00000016377/1-1069 LKALKDQLEV EKQMWEANSA KKEEAWLLNR ERELKEEIRR GRDKEIELVI bmy_02273T0/1-1125 LKALKDQLEV EKQMWEANSA KKEEAWLLNR ERELKEEIRR GRDKEIELVI BACU011607/1-1144 ---------- ---------- -------LNR ERELKEEIRR GRDKEIELVI 951 1000 ENSP00000393583/1-1080 HRLEADMALA KEESEKAAES RIKRLRDKYE AELSELEQSE RKLQERCSEL ENSBTAP00000001166/1-1053 HRLEADMTQA REESERAAEN RVKRLRDKYE AELSELEQSE RKLQERCAEL ENSTTRP00000016377/1-1069 HRLEADMTLA REENERAAES RVKRLRDKYE AELSELEQSE RKLQERCAEL bmy_02273T0/1-1125 HRLEADMTLA REENERAAES RVKRLRDKYE AELSELEQSE RKLQERCAEL BACU011607/1-1144 HRLEADMTLA REENERAAES RVKRLRDKYE AELSELEQSE RKLQERCAEL 1001 1050 ENSP00000393583/1-1080 KGQLGEAEGE NLRLQGLVRQ KERALEDAQA VNEQLSSERS NLAQVIRQEF ENSBTAP00000001166/1-1053 KGRLGEAEGE NVRLQGLVRQ KEKELADVKA VNEQLTGERS SLAQVLRQEF ENSTTRP00000016377/1-1069 KGRLGEAEGE NVRLQGLVRQ KEKELADVKA VNEQLAGERS SLAQVLRQEF bmy_02273T0/1-1125 KGRLGEAEGE NVRLQGLVRQ KEKELADVKA VNEQLAGERS SLAQVLRQEF BACU011607/1-1144 KGRLGEAEGE NVRLQGLVRQ KEKELADVKA VNEQLAGERS SLAQVLRQEF 1051 1100 ENSP00000393583/1-1080 EDRLAASEEE TRQAKAELAT LQARQQLELE E--------- ---------- ENSBTAP00000001166/1-1053 ADRLATSEEE NRQTKAELAE LRARQRLELE QLTREKQAEL EE-------- ENSTTRP00000016377/1-1069 ADRLAASEEE NRQVRAELAE LRARQRLELE E--------- ---------- bmy_02273T0/1-1125 ADRLAASEEE NRQVRAELAE LRARQRLELE QLTREKQAEL EE-------- BACU011607/1-1144 ADRLAASEEE NRQVRAELAE LRARQRLELE QLTREKQAEL EEAAQCRSQQ 1101 1150 ENSP00000393583/1-1080 ---------- ---------- ---------- ---------- ------VHRR ENSBTAP00000001166/1-1053 ---------- ---------- ---------- ---------- ------VHGR ENSTTRP00000016377/1-1069 ---------- ---------- ---------- ---------- ------VHGR bmy_02273T0/1-1125 ---------- ---------- ---------- ---------- ------VHGR BACU011607/1-1144 GWDKVGRSGP SCSSGDGGPP PATLLHSELQ AGVGVWQGHR TEAHRTLPRR 1151 1200 ENSP00000393583/1-1080 VKTALARKEE AVSSLRTQHE ---------- ---------- -----AAVKR ENSBTAP00000001166/1-1053 VKMALAKKEE AVSSLRKQHQ ---------- ---------- -----AAMKR ENSTTRP00000016377/1-1069 VKLALAKKEE AVSSLRKQHE ---------- ---------- -----AAMKR bmy_02273T0/1-1125 VKLALAKKEE AVSSLRKQHE VGPHGRPSWG SGGGSGLTRM DGLLQAAMKR BACU011607/1-1144 VKLALAKKEE AVSSLRKQHE VGPHGRPSWG SGGGLGLTRM DGLLQAAMKR 1201 1250 ENSP00000393583/1-1080 ADHLEELLEQ HRRPTPSTK ENSBTAP00000001166/1-1053 AEHLEELLEQ CRRPFPSAK ENSTTRP00000016377/1-1069 VDHL-ELLEQ -RRPFPSAK bmy_02273T0/1-1125 ADHLEELLEQ RRRPFPSAK BACU011607/1-1144 ADHLEELLEQ RRRPFPSAK