KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:13:36 2014 Check: 00 .. Name: ENSTTRP00000012090/1-929 Len: 1186 Check: 7011 Weight: 1.00 Name: ENSBTAP00000001218/1-982 Len: 1186 Check: 3502 Weight: 1.00 Name: BACU001989/1-1182 Len: 1186 Check: 5429 Weight: 1.00 Name: ENSP00000305714/1-986 Len: 1186 Check: 7800 Weight: 1.00 Name: bmy_00950T0/1-959 Len: 1186 Check: 5552 Weight: 1.00 // 1 50 ENSTTRP00000012090/1-929 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000001218/1-982 ---------- --------MP GVARPPLP-- ---------- ---------L BACU001989/1-1182 MDVGSKEVLM ESPPDYSAVP G-GRFQIPCC PVNIKRLLIV VVVVVLVVVV ENSP00000305714/1-986 ---------- --------MP GVAR--LP-- ---------- ---------L bmy_00950T0/1-959 ---------- --------MP GVARPPLP-- ---------- ---------L 51 100 ENSTTRP00000012090/1-929 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000001218/1-982 LLWLLLL--- ---------- ------ARPG RPLDLAD--- ---------- BACU001989/1-1182 IVGALLMGLH MSQKHTEMVL EMSIAGPEAQ QRLALSERVG TTATFSIGST ENSP00000305714/1-986 LLGLLLL--- ---------- ------PRPG RPLDLAD--- ---------- bmy_00950T0/1-959 LLWLLLL--- ---------- ------ARPG RQLDLAD--- ---------- 101 150 ENSTTRP00000012090/1-929 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000001218/1-982 ----YTYD-- ---------- ---------- ---------- ---------- BACU001989/1-1182 GIVAYDYQRL LIAYKPAPGT CCYVMKMAPQ SIPSLEALTR KFQNFQAEPS ENSP00000305714/1-986 ----YTYD-- ---------- ---------- ---------- ---------- bmy_00950T0/1-959 ----YTYD-- ---------- ---------- ---------- ---------- 151 200 ENSTTRP00000012090/1-929 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000001218/1-982 -----LGEED DAE------- ---------- ---------- ---------- BACU001989/1-1182 VPTSKLGQEE GRDAGLASSG DLAFLGSTGL SKLQRDRKAP GAKGLVQTGR ENSP00000305714/1-986 -----LAEED DSE------- ---------- ---------- ---------- bmy_00950T0/1-959 -----LGEED DAE------- ---------- ---------- ---------- 201 250 ENSTTRP00000012090/1-929 ---------- ---------- ---------- ---------- ---------A ENSBTAP00000001218/1-982 ------PLN- -------YKD PCK------- ---------- -------AAA BACU001989/1-1182 KPLLPIPLGL VLEKWELWGE PENKTKTFDP VLKTTTILTL TLTQGFLPAA ENSP00000305714/1-986 ------PLN- -------YKD PCK------- ---------- -------AAA bmy_00950T0/1-959 ------PLN- -------YKD PCK------- ---------- -------AAA 251 300 ENSTTRP00000012090/1-929 FLGDIALDEE DLRAFQVQQA ADLRQRATSR SSIKAAVSGN SSTLNCQSTS ENSBTAP00000001218/1-982 FLGDIALDEE DLRAFQVQQA ADLRQRATRR SSIKAAVSGN SSTLNSQNTS BACU001989/1-1182 FLGDIALDEE DLRAFQVQQA ADLRQRATRR SSVKAA--GN SSTLNCQSTS ENSP00000305714/1-986 FLGDIALDEE DLRAFQVQQA VDLRRHTARK SSIKAAVPGN TSTPSCQSTN bmy_00950T0/1-959 FLGDIALDEE DLRAFQLQQX ADLRQRATRR SSIKAA--GN SSTLNCQSTS 301 350 ENSTTRP00000012090/1-929 GQPQRKSHGR WRS-SRSRRA ATSRPERVWP DGVIPFVIGG NFTXXXXXXX ENSBTAP00000001218/1-982 MKPQRRSRGR WKSRSRSRRA ATSRPERVWP DGVIPFVIGG NFTGSQRAVF BACU001989/1-1182 GQPQRRSHGR WRSRSRSRRA ATSRPERVWP DGVIPFVIGG NFTGSQRAVF ENSP00000305714/1-986 GQPQRGACGR WRGRSRSRRA ATSRPERVWP DGVIPFVIGG NFTGSQRAVF bmy_00950T0/1-959 GQPQRRSHGR WRSRSRSRRA ATSRPERVWP DGVIPFVIGG NFTGSQRAVF 351 400 ENSTTRP00000012090/1-929 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXCCSYVGR RGGGPQAISI ENSBTAP00000001218/1-982 RQAMRHWEKH TCVTFLERTD EDSYIVFTYR PCGCCSYVGR RGGGPQAISI BACU001989/1-1182 RQAMRHWEKH TCVTFLERTD EDSYIVFTYR PCGCCSYVGR RGGGPQAISI ENSP00000305714/1-986 RQAMRHWEKH TCVTFLERTD EDSYIVFTYR PCGCCSYVGR RGGGPQAISI bmy_00950T0/1-959 RQAMRHWEKH TCVTFLERTD EDSYIVFTYR PCGCCSYVGR RGGGPQAISI 401 450 ENSTTRP00000012090/1-929 GKNCDKFGIV VHELGHVIGF WHEHTRPDRD RHVSIVRENI QPGQEYNFLK ENSBTAP00000001218/1-982 GKNCDKFGIV VHELGHVIGF WHEHTRPDRD RHVSIVRENI QPGQEYNFLK BACU001989/1-1182 GKNCDKFGIV VHELGHVIGF WHEHTRPDRD RHVSIVRENI QPGQEYNFLK ENSP00000305714/1-986 GKNCDKFGIV VHELGHVVGF WHEHTRPDRD RHVSIVRENI QPGQEYNFLK bmy_00950T0/1-959 GKNCDKFGIV VHELGHVIGF WHEHTRPDRD RHVSIVRENI QPGQEYNFLK 451 500 ENSTTRP00000012090/1-929 MEVQEVESLG ETYDFDSIMH YARNTFSRGI FLDTIVPKYE VNGVKPPIGQ ENSBTAP00000001218/1-982 MEVQEVESLG ETYDFDSIMH YARNTFSRGI FLDTIVPKYE VNGVKPPIGQ BACU001989/1-1182 MEVQEVESLG ETYDFDSIMH YARNTFSRGI FLDTIVPKYE VNGVKPPIGQ ENSP00000305714/1-986 MEPQEVESLG ETYDFDSIMH YARNTFSRGI FLDTIVPKYE VNGVKPPIGQ bmy_00950T0/1-959 MEVQEVESLG ETYDFDSIMH YARNTFSRGI FLDTIVPKYE VNGVKPPIGQ 501 550 ENSTTRP00000012090/1-929 RTRLSKGDIA QARKLYKCPA CGETLQDSTG NFSSPEYPNG YSAHMHCVWR ENSBTAP00000001218/1-982 RTRLSKGDIA QARKLYKCPA CGETLQDSTG NFSSPEYPNG YSAHMHCVWR BACU001989/1-1182 RTRLSKGDIA QARKLYKCPA CGETLQDSTG NFSSPEYPNG YSAHMHCVWR ENSP00000305714/1-986 RTRLSKGDIA QARKLYKCPA CGETLQDSTG NFSSPEYPNG YSAHMHCVWR bmy_00950T0/1-959 RTRLSKGDIA QARKLYKCPA CGETLQDSTG NFSSPEYPNG YSAHMHCVWR 551 600 ENSTTRP00000012090/1-929 ISVTPGEKII LNFTSMDLYR SRLCWYDYVE VRDGFWRKAP LRGRFCGGKL ENSBTAP00000001218/1-982 ISVTPGEKII LNFTSMDLYR SRLCWYDYVE VRDGFWRKAP LRGRFCGGKL BACU001989/1-1182 ISVTPGEKII LNFTSMDLYR SRLCWYDYVE VRDGFWRKAP LRGRFCGGKL ENSP00000305714/1-986 ISVTPGEKII LNFTSLDLYR SRLCWYDYVE VRDGFWRKAP LRGRFCGSKL bmy_00950T0/1-959 ISVTPGEKII LNFTSMDLYR SRLCWYDYVE VRDGFWRKAP LRGRFCGGKL 601 650 ENSTTRP00000012090/1-929 PEPIVSTDSR LWVEFRSSSN WVGKGFFAVY EAICGGDVKK DNGHIQSPNY ENSBTAP00000001218/1-982 PEPIVSTDSR LWVEFRSSSN WVGKGFFAVY EAICGGDVKK DNGHIQSPNY BACU001989/1-1182 PEPIVSTDSR LWVEFRSSSN WVGKGFFAVY EAICGGDVKK DNGHIQSPNY ENSP00000305714/1-986 PEPIVSTDSR LWVEFRSSSN WVGKGFFAVY EAICGGDVKK DYGHIQSPNY bmy_00950T0/1-959 PEPIVSTDSR LWVEFRSSSN WVGKGFFAVY EAICGGDVKK DNGHIQSPNY 651 700 ENSTTRP00000012090/1-929 PDDYRPSKVC IWRIQVSEGF HVGLTFQSFE IERHDSCAYD YLEVRDGHSE ENSBTAP00000001218/1-982 PDDYRPSKVC VWRIQVSEGF HVGLTFQSFE IERHDSCAYD YLEVRDGHSE BACU001989/1-1182 PDDYRPSKVC IWRIQVSEGF HVGLTFQSFE IERHDSCAYD YLEVRDGHSE ENSP00000305714/1-986 PDDYRPSKVC IWRIQVSEGF HVGLTFQSFE IERHDSCAYD YLEVRDGHSE bmy_00950T0/1-959 PDDYRPSKVC IWRIQVSEGF HVGLTFQSFE IERHDSCAYD YLEVRDGHSE 701 750 ENSTTRP00000012090/1-929 SSTLIGRYCG YEKPDDIKST SSRLWLKFVS DGSINKAGFA VNFFK-EVDE ENSBTAP00000001218/1-982 SSTLIGRYCG YEKPDDIKST SSRLWLKFVS DGSINKAGFA VNFFKVSLTE BACU001989/1-1182 SSTLIGRYCG YEKPDDIKST SSRLWLKFVS DGSINKAGFA VNFFK-EVDE ENSP00000305714/1-986 SSTLIGRYCG YEKPDDIKST SSRLWLKFVS DGSINKAGFA VNFFK-EVDE bmy_00950T0/1-959 SSTLIGRYCG YEKPDDIKST SSRLWLKFVS DGSINKAGFA VNFFK-EVDE 751 800 ENSTTRP00000012090/1-929 CSRPNRGGCE QRCLNTLGSY KCSCDPGYEL APDKRRCEAA CGGFLTKLNG ENSBTAP00000001218/1-982 KGILVRGG-G RKCHSSSEPR LLGGDTAFLV PP------AA CGGFLTKLNG BACU001989/1-1182 CSRPNRGGCE QRCLNTLGSY KCSCDPGYEL APDKRRCEAA CGGFLTKLNG ENSP00000305714/1-986 CSRPNRGGCE QRCLNTLGSY KCSCDPGYEL APDKRRCEAA CGGFLTKLNG bmy_00950T0/1-959 CSRPNRGGCE QRCLNTLGSY KCSCDPGYEL APDKRRCEAA CGGFLTKLNG 801 850 ENSTTRP00000012090/1-929 SITSPGWPKE YPPNKNCIWQ LVAPTQYRIS LQFDFFETEG NDVCKYDFVE ENSBTAP00000001218/1-982 SITSPGWPKE YPPNKNCIWQ LVAPTQYRIS LQFDFFETEG NDVCKYDFVE BACU001989/1-1182 SITSPGWPKE YPPNKNCIWQ LVAPTQYRIS LQFDFFETEG NDVCKYDFVE ENSP00000305714/1-986 SITSPGWPKE YPPNKNCIWQ LVAPTQYRIS LQFDFFETEG NDVCKYDFVE bmy_00950T0/1-959 SITSPGWPKE YPPNKNCIWQ LVAPTQYRIS LQFDFFETEG ND-------- 851 900 ENSTTRP00000012090/1-929 VRSGLTADSK LHGKFCGSEK PEVITSQYNN MRVEFKSDNT VSKKGFKAHF ENSBTAP00000001218/1-982 VRSGLTADSK LHGKFCGSEK PEVITSQYNN MRVEFKSDNT VSKKGFKAHF BACU001989/1-1182 VRSGLTADSK LHGKFCGSEK PEVITSQYNN MRVEFKSDNT VSKKGFKAHF ENSP00000305714/1-986 VRSGLTADSK LHGKFCGSEK PEVITSQYNN MRVEFKSDNT VSKKGFKAHF bmy_00950T0/1-959 ---------- ---------K PEVITSQYNN MRVEFKSDNT VSKKGFKAHF 901 950 ENSTTRP00000012090/1-929 FSDKDECSKD NGGCQQDCVN TFGSYECQCR SGFVLHDNKH DCKEAGCDHK ENSBTAP00000001218/1-982 FSDKDECSKD NGGCQQDCVN TFGSYECQCR SGFVLHDNKH DCKEAGCDHK BACU001989/1-1182 FSDKDECSKD NGGCQQDCVN TFGSYECQCR SGFVLHDNKH DCKEAGCDHR ENSP00000305714/1-986 FSDKDECSKD NGGCQQDCVN TFGSYECQCR SGFVLHDNKH DCKEAGCDHK bmy_00950T0/1-959 FSDKDECSKD NGGCQQDCVN TFGSYECQCR SGFVLHDNKH DCKEAGCDHR 951 1000 ENSTTRP00000012090/1-929 VTSTSGTITS PNWPDKYPSK KECTWAISST PGHRVKLTFM EMDIESQPEC ENSBTAP00000001218/1-982 VTSSSGTITS PNWPDKYPSK KECTWAISST PGHRVKLTFM EMDIESQPEC BACU001989/1-1182 VTSTSGTITS PNWPDKYPSK KECTWAISST PGHRVKLTFM EMDIESQPEC ENSP00000305714/1-986 VTSTSGTITS PNWPDKYPSK KECTWAISST PGHRVKLTFM EMDIESQPEC bmy_00950T0/1-959 VTSTSGTITS PNWPDKYPSK KECTWAISST PGHRVKLTFT EMDIESQPEC 1001 1050 ENSTTRP00000012090/1-929 AYDHLEVYDG RDAKAPVLGR FCGSKKPEPV LATGSRMFLR FYSDNSVQRK ENSBTAP00000001218/1-982 AYDHLEVYDG RDSKAPVLGR FCGSKKPEPV LATGNRMFLR FYSDNSVQRK BACU001989/1-1182 AYDHLEVHDG RDAKAPVLGR FCGSKKPEPV LATGSRMFLR FYSDNSVQRK ENSP00000305714/1-986 AYDHLEVFDG RDAKAPVLGR FCGSKKPEPV LATGSRMFLR FYSDNSVQRK bmy_00950T0/1-959 AYDHLEVYDG RDAKAPVLGR FCGSKKPEPV LATGNRMFLR FYSDNSVQRK 1051 1100 ENSTTRP00000012090/1-929 GFQVSHSTEC GGQVQAEVKT KDLYSHAQFG DNNYPGGVDC EWVIVAEEGY ENSBTAP00000001218/1-982 GFQASHSTEC GGQVRAEVKT KDLYSHAQFG DNNYPGGVDC EWVIVAEEGY BACU001989/1-1182 GFQASHSTEC GGQVQAEVKT KDLYSHAQFG DNNYPGGVDC AWVIVAEEGY ENSP00000305714/1-986 GFQASHATEC GGQVRADVKT KDLYSHAQFG DNNYPGGVDC EWVIVAEEGY bmy_00950T0/1-959 GFQASHSTEC GGQVQAEVKT KDLYSHAQFG DNNYPGGVDC AWVIVAEEGY 1101 1150 ENSTTRP00000012090/1-929 GVELVFQTFE VEEEADCGYD YMELFDGYDS TAPRLGRYCG SGPPEEVYSA ENSBTAP00000001218/1-982 GVELVFQTFE VEEETDCGYD YMELFDGYDS TAPRLGRYCG SGPPEEVYSA BACU001989/1-1182 GVELVFQTFE VEEETDCGYD YMELFDGYDS TAPRLGRYCG SGPPEEVYSA ENSP00000305714/1-986 GVELVFQTFE VEEETDCGYD YMELFDGYDS TAPRLGRYCG SGPPEEVYSA bmy_00950T0/1-959 GVELVFQTFE VEEETDCGYD YMELFDGYDS TAPRLGRYCG SGPPEEVYSA 1151 1200 ENSTTRP00000012090/1-929 GDSVLVKFQW DDTITKKGFH LRYTSTRCQD ------ ENSBTAP00000001218/1-982 GDSVLVKFHS DDTITKKGFH LRYTSTKFQD TLHSRK BACU001989/1-1182 GDSVLVKFHS DDTITKKGFH LRYTSTKFQD TLHSRK ENSP00000305714/1-986 GDSVLVKFHS DDTITKKGFH LRYTSTKFQD TLHSRK bmy_00950T0/1-959 GDSVLVKFHS DDTITKKGFH LRYTSTKFQD TLHSRK