KEY:
    ENSP* - Homo sapiens (Human)
    ENSBTA* - Bos taurus (Cow)
    ENSTTR* - Tursiops truncatus (Dolphin)
    bmy_* - Balaena mysticetus (Bowhead whale)
    BACU* - Balaenoptera acutorostrata (Minke whale)

Copy from below the line for a valid .msf file.

----------------------------------------------------------------------------------
                
NoName   MSF: 5  Type: P  Thu May 15 16:13:37 2014  Check: 00 ..

 Name: ENSBTAP00000001222/1-309  Len:    335  Check:  311  Weight:  1.00
 Name: ENSP00000243056/1-330     Len:    335  Check:  524  Weight:  1.00
 Name: bmy_04696T0/1-330         Len:    335  Check:  9928  Weight:  1.00
 Name: BACU008083/1-79           Len:    335  Check:  450  Weight:  1.00
 Name: ENSTTRP00000004278/1-335  Len:    335  Check:  7240  Weight:  1.00

//


                          1                                                   50
ENSBTAP00000001222/1-309  ---------- ---------- -SAXESGS-- ---GGGSGGG GGSAGGAGVG 
ENSP00000243056/1-330     MTTSLLLHPR WPESLMYVYE DSAAESGI-- ---GGGGGGG GGGTGGAGGG 
bmy_04696T0/1-330         MTTSLLLHPR WPESLMYVYE DSAAESGS-- ---GGGGGGG GGGAGGAGGG 
BACU008083/1-79           ---------- ---------- ---------- ---------- ---------- 
ENSTTRP00000004278/1-335  MTTSLLLHPR WPESLMYVYE DSAAESGSGG GGGGGGGGGG GGGAGGAGGG 


                          51                                                 100
ENSBTAP00000001222/1-309  CSGASPGKAP SMDGLGNSCP ASHCRDLLPH PVLGRPPAPL GAPQGAVYTD 
ENSP00000243056/1-330     CSGASPGKAP SMDGLGSSCP ASHCRDLLPH PVLGRPPAPL GAPQGAVYTD 
bmy_04696T0/1-330         CSGASPGKAP SMDGLGSSCP ASHCRDLLPH PVLGRPPAPL GAPQGAVYTD 
BACU008083/1-79           ---------- ---------- ---------- ---------- ---------- 
ENSTTRP00000004278/1-335  CSGASPGKAP SMDGLGSSCP ASHCRDLLPH PVLGRPPAPL GAPQGAVYTD 


                          101                                                150
ENSBTAP00000001222/1-309  IPAPEAARQC APPPAPPTSS SATLGYGYPF GGSYYGCRLS HNVNLQQKPC 
ENSP00000243056/1-330     IPAPEAARQC APPPAPPTSS SATLGYGYPF GGSYYGCRLS HNVNLQQKPC 
bmy_04696T0/1-330         IPAPEAARQC APPPAPPTSS SATLGYGYPF GGSYYGCRLS HNVNLQQKPC 
BACU008083/1-79           ---------- ---------- ---------- ---------- ---------- 
ENSTTRP00000004278/1-335  IPAPEAARQC APPPAPPTSS SATLGYGYPF GGSYYGCRLS HNVNLQQKPC 


                          151                                                200
ENSBTAP00000001222/1-309  AYHPGDKYPE PSGALPGDDL SSRAKEFAFY PSFASSYQAM PGYLDVSVVP 
ENSP00000243056/1-330     AYHPGDKYPE PSGALPGDDL SSRAKEFAFY PSFASSYQAM PGYLDVSVVP 
bmy_04696T0/1-330         AYHPGDKYPE PSGALPGDDL SSRAKEFAFY PSFASSYQAM PGYLDVSVVP 
BACU008083/1-79           ---------- ---------- ---------- ---------- ---------- 
ENSTTRP00000004278/1-335  AYHPGDKYPE PSGALPGDDL SSRAKEFAFY PSFASSYQAM PGYLDVSVVP 


                          201                                                250
ENSBTAP00000001222/1-309  GISGHPEPRH DALIPVEGYQ HWALSNGWDS QVYCSKEQSQ SAHLWKSPFP 
ENSP00000243056/1-330     GISGHPEPRH DALIPVEGYQ HWALSNGWDS QVYCSKEQSQ SAHLWKSPFP 
bmy_04696T0/1-330         GISGHPEPRH DALIPVEGYQ HWALSNGWDS QVYCSKEQSQ SAHLWKSPFP 
BACU008083/1-79           ---------- ---------- ---------- ---------- ---------- 
ENSTTRP00000004278/1-335  GISGHPEPRH DALIPVEGYQ HWALSNGWDS QVYCSKEQSQ SAHLWKSPFP 


                          251                                                300
ENSBTAP00000001222/1-309  DVVPLQPEVN SYRRGRKKRV PYTKVQLKEL EKEYAASKFI TKEKRRRISA 
ENSP00000243056/1-330     DVVPLQPEVS SYRRGRKKRV PYTKVQLKEL EKEYAASKFI TKEKRRRISA 
bmy_04696T0/1-330         DVVPLQPEVN SYRRGRKKRV PYTKVQLKEL EKEYAASKFI TKEKRRRISA 
BACU008083/1-79           ------PEVN SYRRGRKKRV PYTKVQLKEL EKEYAASKFI TKEKRRRISA 
ENSTTRP00000004278/1-335  DVVPLQPEVN SYRRGRKKRV PYTKVQLKEL EKEYAASKFI TKEKRRRISA 


                          301                                                350
ENSBTAP00000001222/1-309  TTNLSERQVT IWFQNRRVKE KKVVSKSKTP HLHST 
ENSP00000243056/1-330     TTNLSERQVT IWFQNRRVKE KKVVSKSKAP HLHST 
bmy_04696T0/1-330         TTNLSERQVT IWFQNRRVKE KKVVSKSKAP HLHST 
BACU008083/1-79           TTNLSERQVT IWFQNRRVKE KKVVSKSKAP HLHST 
ENSTTRP00000004278/1-335  TTNLSERQVT IWFQNRRVKE KKVVSKSKAP HLHST