KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 5 Type: P Thu May 15 16:13:37 2014 Check: 00 ..
Name: ENSBTAP00000001222/1-309 Len: 335 Check: 311 Weight: 1.00
Name: ENSP00000243056/1-330 Len: 335 Check: 524 Weight: 1.00
Name: bmy_04696T0/1-330 Len: 335 Check: 9928 Weight: 1.00
Name: BACU008083/1-79 Len: 335 Check: 450 Weight: 1.00
Name: ENSTTRP00000004278/1-335 Len: 335 Check: 7240 Weight: 1.00
//
1 50
ENSBTAP00000001222/1-309 ---------- ---------- -SAXESGS-- ---GGGSGGG GGSAGGAGVG
ENSP00000243056/1-330 MTTSLLLHPR WPESLMYVYE DSAAESGI-- ---GGGGGGG GGGTGGAGGG
bmy_04696T0/1-330 MTTSLLLHPR WPESLMYVYE DSAAESGS-- ---GGGGGGG GGGAGGAGGG
BACU008083/1-79 ---------- ---------- ---------- ---------- ----------
ENSTTRP00000004278/1-335 MTTSLLLHPR WPESLMYVYE DSAAESGSGG GGGGGGGGGG GGGAGGAGGG
51 100
ENSBTAP00000001222/1-309 CSGASPGKAP SMDGLGNSCP ASHCRDLLPH PVLGRPPAPL GAPQGAVYTD
ENSP00000243056/1-330 CSGASPGKAP SMDGLGSSCP ASHCRDLLPH PVLGRPPAPL GAPQGAVYTD
bmy_04696T0/1-330 CSGASPGKAP SMDGLGSSCP ASHCRDLLPH PVLGRPPAPL GAPQGAVYTD
BACU008083/1-79 ---------- ---------- ---------- ---------- ----------
ENSTTRP00000004278/1-335 CSGASPGKAP SMDGLGSSCP ASHCRDLLPH PVLGRPPAPL GAPQGAVYTD
101 150
ENSBTAP00000001222/1-309 IPAPEAARQC APPPAPPTSS SATLGYGYPF GGSYYGCRLS HNVNLQQKPC
ENSP00000243056/1-330 IPAPEAARQC APPPAPPTSS SATLGYGYPF GGSYYGCRLS HNVNLQQKPC
bmy_04696T0/1-330 IPAPEAARQC APPPAPPTSS SATLGYGYPF GGSYYGCRLS HNVNLQQKPC
BACU008083/1-79 ---------- ---------- ---------- ---------- ----------
ENSTTRP00000004278/1-335 IPAPEAARQC APPPAPPTSS SATLGYGYPF GGSYYGCRLS HNVNLQQKPC
151 200
ENSBTAP00000001222/1-309 AYHPGDKYPE PSGALPGDDL SSRAKEFAFY PSFASSYQAM PGYLDVSVVP
ENSP00000243056/1-330 AYHPGDKYPE PSGALPGDDL SSRAKEFAFY PSFASSYQAM PGYLDVSVVP
bmy_04696T0/1-330 AYHPGDKYPE PSGALPGDDL SSRAKEFAFY PSFASSYQAM PGYLDVSVVP
BACU008083/1-79 ---------- ---------- ---------- ---------- ----------
ENSTTRP00000004278/1-335 AYHPGDKYPE PSGALPGDDL SSRAKEFAFY PSFASSYQAM PGYLDVSVVP
201 250
ENSBTAP00000001222/1-309 GISGHPEPRH DALIPVEGYQ HWALSNGWDS QVYCSKEQSQ SAHLWKSPFP
ENSP00000243056/1-330 GISGHPEPRH DALIPVEGYQ HWALSNGWDS QVYCSKEQSQ SAHLWKSPFP
bmy_04696T0/1-330 GISGHPEPRH DALIPVEGYQ HWALSNGWDS QVYCSKEQSQ SAHLWKSPFP
BACU008083/1-79 ---------- ---------- ---------- ---------- ----------
ENSTTRP00000004278/1-335 GISGHPEPRH DALIPVEGYQ HWALSNGWDS QVYCSKEQSQ SAHLWKSPFP
251 300
ENSBTAP00000001222/1-309 DVVPLQPEVN SYRRGRKKRV PYTKVQLKEL EKEYAASKFI TKEKRRRISA
ENSP00000243056/1-330 DVVPLQPEVS SYRRGRKKRV PYTKVQLKEL EKEYAASKFI TKEKRRRISA
bmy_04696T0/1-330 DVVPLQPEVN SYRRGRKKRV PYTKVQLKEL EKEYAASKFI TKEKRRRISA
BACU008083/1-79 ------PEVN SYRRGRKKRV PYTKVQLKEL EKEYAASKFI TKEKRRRISA
ENSTTRP00000004278/1-335 DVVPLQPEVN SYRRGRKKRV PYTKVQLKEL EKEYAASKFI TKEKRRRISA
301 350
ENSBTAP00000001222/1-309 TTNLSERQVT IWFQNRRVKE KKVVSKSKTP HLHST
ENSP00000243056/1-330 TTNLSERQVT IWFQNRRVKE KKVVSKSKAP HLHST
bmy_04696T0/1-330 TTNLSERQVT IWFQNRRVKE KKVVSKSKAP HLHST
BACU008083/1-79 TTNLSERQVT IWFQNRRVKE KKVVSKSKAP HLHST
ENSTTRP00000004278/1-335 TTNLSERQVT IWFQNRRVKE KKVVSKSKAP HLHST