KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:13:39 2014 Check: 00 .. Name: ENSP00000388731/1-1259 Len: 1345 Check: 777 Weight: 1.00 Name: ENSBTAP00000001241/1-1256 Len: 1345 Check: 6349 Weight: 1.00 Name: ENSTTRP00000014388/1-1253 Len: 1345 Check: 5045 Weight: 1.00 Name: bmy_04298T0/1-1234 Len: 1345 Check: 4981 Weight: 1.00 Name: BACU014055/1-1316 Len: 1345 Check: 3446 Weight: 1.00 // 1 50 ENSP00000388731/1-1259 MDRPLSSSAE AEEELEWQVA SRRRKAWAKC RSSWQASETE DLSTEATTQD ENSBTAP00000001241/1-1256 MDRPLVASAE AEEELEWQVA SRRRKAWAKC RGSWQASETE DLSTEATTQD ENSTTRP00000014388/1-1253 MDRPLVASAE AEEELEWQVA SRRRKAWAKC RGSWQASETE DLSTEATTQD bmy_04298T0/1-1234 MQEQVKLTEK HKNKL----V NRNQN----- ---------- ----NGKLND BACU014055/1-1316 MDQPLVASAE AEEELEWQVA SCRRKAWAKC RGSWQASETE DLSTEAKTQD 51 100 ENSP00000388731/1-1259 EEED-EEEDL PG-------- --AQLPAAGG RGNVPNE--- --KIAIWLKD ENSBTAP00000001241/1-1256 EDEDEDEDDL SG-------- --TKLPAAAG RGNVPNE--- --KIAIWLKD ENSTTRP00000014388/1-1253 EDED-DEEDL SG-------- --AKLPAAAG RGNVPNE--- --KIAIWLKD bmy_04298T0/1-1234 SKSTIRTKRL RK-------- --SFLEKRHS R-NVPNE--- --KIAIWLKD BACU014055/1-1316 EDEE-DGXXX XXXXXXXXXX XXXXAPRGSG GRGARGSSGG RGKVSCALGD 101 150 ENSP00000388731/1-1259 C--------- ---------- ---------- ---------- ---------- ENSBTAP00000001241/1-1256 C--------- ---------- ---------- ---------- ---------- ENSTTRP00000014388/1-1253 C--------- ---------- ---------- ---------- ---------- bmy_04298T0/1-1234 C--------- ---------- ---------- ---------- ---------- BACU014055/1-1316 CCEFWKIVLG SGGRGERGHF RPLNVRAWKR AQREDRDMAQ GLPVSPRLRR 151 200 ENSP00000388731/1-1259 -----RTPLG ASLDEQSSST L--------- ---KGVLVRN GGSFEDDLSL ENSBTAP00000001241/1-1256 -----RTPLG ASLDEQSGST L--------- ---KGVLVRN GGSFEDDLSL ENSTTRP00000014388/1-1253 -----RTPLG ASLDEQSSST L--------- ---KGVLVRN GGSFEDDLSL bmy_04298T0/1-1234 -----RTPLG ASLDEQSSST L--------- ---KGVLVRN GGSFEDDLSL BACU014055/1-1316 SRPGGRSALM GRLGGVTRAA VLAGPLDLVS HKPESVLVRN GGSFEDDLSL 201 250 ENSP00000388731/1-1259 GAEANHLHES DAQIENCNNI LAKERRLQFH QKGRSMNSTG SGKSSGTVSS ENSBTAP00000001241/1-1256 GAEANHLHEI DAQIDNCSNI LAKERRLQFH QKGRSMNSTG SGKSSGTVSS ENSTTRP00000014388/1-1253 GAEANHLHET DAQIENCNNI LAKERRLQFH QKGRSMNSTG SGKSSGTVSS bmy_04298T0/1-1234 GAEANHLHET DAQIENCNNI LAKERRLQFH QKGRSMNSTG SGKSSGTVSS BACU014055/1-1316 GAEANHLHET DAQIENCNNI LAKERRLQFH QKGRSMNSTG SGKSSGTVSS 251 300 ENSP00000388731/1-1259 VSELLELYEE DPEEILYNLG FGRDEPDIAS KIPSRFFNSS SFAKGIDIKV ENSBTAP00000001241/1-1256 VSELLELYEE DPEEILYNLG FGRDEPDIAS KIPSRFFNSS SFARGIDIKV ENSTTRP00000014388/1-1253 VSKLLELYEE DPEEILYNLG FGRDEPDIAS KIPSRFFNSS SFARGIDIKV bmy_04298T0/1-1234 VSELLELYEE DPEEILYNLG FGRDEPDIAS KIPSRFFNSS SFARGIDIKV BACU014055/1-1316 VSELLELYEE DPEEILYNLG FGRDEPDIAS KIPSRFFNSS SFARGIDIKV 301 350 ENSP00000388731/1-1259 FLSAQMQRME VENPNYALTS RFRQIEVLTT VANAFSSLYS QVSGTPLQRI ENSBTAP00000001241/1-1256 FLSAQMQRME VENPNYALTS RFRQIEVLTT VANAFSSLYS QVSGTPLQRI ENSTTRP00000014388/1-1253 FLSAQMQRME VENPNYALTS RFRQIEVLTT VANAFSSLYS QVSGTPLQRI bmy_04298T0/1-1234 FLSAQMQRME VENPNYALTS RFRQIEVLTT VANAFSSLYS QVSGTPLQRI BACU014055/1-1316 FLSAQMQRME VENPNYALTS RFRQIEVLTT VANAFSSLYS QVSGTPLQRI 351 400 ENSP00000388731/1-1259 GSMSSVTSNK ETDPPPPLTR SNTANRLMKT LSKLNLCVDK TEKGESSSPS ENSBTAP00000001241/1-1256 GSMSSVTSDK ETDSPPPLTR SNTANRLMKT LSKLNLCIEK TEKGEGSTPS ENSTTRP00000014388/1-1253 GSLSSVTSNK ETDSPPPLTR SNTANRLMKT LSKLNLCVDK TEKGEGSTLS bmy_04298T0/1-1234 GSLSSVTSNR EADSPPPLTR SNTANRLMKT LSKLNLCVDK TEKGEGSTPS BACU014055/1-1316 GSLSSVTSNR EADSPPPLTR SNTANRLMKT LSKLNLCVDK TEKGEGSTPS 401 450 ENSP00000388731/1-1259 PSAEKGKILN VSVIEESGNK NDQKSQKIMK KKESSSMLAT VKEEVSGSSA ENSBTAP00000001241/1-1256 LAVDKGKIVN ISVMEESGNK NDQKSQKVVK KKESSSVLAT VKEEVSGSSA ENSTTRP00000014388/1-1253 PAVDKGKTLN LSVMEEIGNK SDQKSQKIVK KKDSSSMLAT VKEEVSGSSA bmy_04298T0/1-1234 PAVDKGKTLN VSVMEEIGNK NDQKSQKIVK KKDSSSMLAT VKEEVSGSSA BACU014055/1-1316 PTVDKGKTLN VSVMEEIGNK NDQKSQKIVK KKDSSSMLAT VKEEVSGSSA 451 500 ENSP00000388731/1-1259 AVTENADSDR ISDEANSNFN QGTENEQSKE TQSHESKLGE ESGIVESKLD ENSBTAP00000001241/1-1256 ALVENSDIDG LSDEANSNFN REAESGQSQE TQSHENKLDE ESGFLETDLG ENSTTRP00000014388/1-1253 AVMENADIDR LSDEANSNFN QEAESGQSKE TQSHENKLGE EAGIIKTHLD bmy_04298T0/1-1234 AVMENADIDR LSDEANSNFN EETESGQSKE TQSHENKLGE EAGIIKTHLD BACU014055/1-1316 AVMENADIDG LSDEANSNFN EETESGQSKE TQSHENKLGE EAGIIKTHLD 501 550 ENSP00000388731/1-1259 SDFNISSHSE LENSSELKSV HISTPEKEPC APLTIPSIRN IMTQQKDSFE ENSBTAP00000001241/1-1256 GDFNMSSHSE LENSGELKNV PLCTPEKEPC APLMIPSIRN IMAQQKDSFE ENSTTRP00000014388/1-1253 SDFNMSSHSE LENSRELKNV PLSTPEKEPC APLTIPSIRS IMAQQKDSFE bmy_04298T0/1-1234 SDFNMSSHSE LENSRELKNV PLSTPEKEPC APLTIPSIRN IMAQQKDSFE BACU014055/1-1316 SDLNMSSHSE LENSRELKNV PLSTPEKEPC APLTIPSIRN IMAQQKDSFE 551 600 ENSP00000388731/1-1259 MEEVQSTEGE APHVPATYQL GLTKSKRDHL LRTASQHSDS SGFAEDSTDC ENSBTAP00000001241/1-1256 MEEVQSTEGE APHVPTTYQL GLNKSKRDQL LRTASQHSDS SGFAEDSTDC ENSTTRP00000014388/1-1253 MEEVQSTEGE APHVPTTYQL GLNKSKRDQL LRTASQHSDS SGFAEDSTDC bmy_04298T0/1-1234 MEEVQSTEGE APHVPTTYQL GLNKSKKDQL LRTASQHSDS SGFAEDSTDC BACU014055/1-1316 MEEVQSTEGE APHVPTTYQL GLNKSKKDQL LRTASQHSDS SGFAEDSTDC 601 650 ENSP00000388731/1-1259 LSLNHLQVQE SLQAMGSSAD SCDSETTVTS LGEDLATPTA QDQPYFNESE ENSBTAP00000001241/1-1256 LSLNHLQVHE SLQAMGSSAD SCDSETTVTS FGEDLVTPTV QDQRYFNESE ENSTTRP00000014388/1-1253 LSLNHLQVHE SLQAMGSSAD SCDSETTVTS FGEDLVTPTA QDQPYFNESE bmy_04298T0/1-1234 LSLNHLQVHE SLQAMGSSAD SCDSETTVTS FGEDLVTPTA QDQPYFNESE BACU014055/1-1316 LSLNHLQVHE SLQAMGSSAD SCDSETTVTS FGEDLVTPTA QDQPYFNESE 651 700 ENSP00000388731/1-1259 EESLVPLQKG LEKAAAVADK RKSGSQDFPQ CNTIENTGTK QSTCSPGDHI ENSBTAP00000001241/1-1256 EESLTCPQIE REKAATVAEK RSDG-QDSLL CQTVENIGHQ QSTWSAGDHA ENSTTRP00000014388/1-1253 EESLTCPQMG REKAATIADK RSDG-QDFPQ CETVENTGHQ QSTCSAGDHV bmy_04298T0/1-1234 EESLTCPQMG REKAATIADK RSDG-QDFPQ CEIVENTGHQ QSTWSAGDHV BACU014055/1-1316 EESLTRPQMG REKAATVADK RSAG-QDFPQ CETVEKTGHQ QSTWSAGDHV 701 750 ENSP00000388731/1-1259 IEITEVEEDL FPAETVELLR EASAESDVGK SSESEFTQYT THHILKSLAS ENSBTAP00000001241/1-1256 TEITERKEDV SPAQPVELLR EASAESDVDK SSECEFVQYT THHILKSLAS ENSTTRP00000014388/1-1253 TEITERKEVV SPAQPVELLR EASAESDVDK SSECEFAQYT THHILKSLAS bmy_04298T0/1-1234 TEITERKEDV SPAQPVELLR EASAESDVDK SSECEFAQYT THHILKSLAS BACU014055/1-1316 TEIAERKEDV SPAQPVQLLR EASAESDVDK SSECEFAQYT THHILKSLAS 751 800 ENSP00000388731/1-1259 IEAKCSDMSS ENTTGPPSSM DRVNTALQRA QMKVCSLSNQ RMGRSLLKSK ENSBTAP00000001241/1-1256 IEAKCGEKGA ENTTGSPSSV DRVNTALQRA QMKVCSLSNQ RVGRSLIKSK ENSTTRP00000014388/1-1253 IEAKCNEKGA ENTTGPPSSV DRVNTALQRA QMKVCTLSNQ RVGRSLIKSK bmy_04298T0/1-1234 VEAKCNEKGA ENTXGPPSSV DRVNTALQRA QMKVCTLSNQ RVGRSLIKSK BACU014055/1-1316 VDAKCNEKGA ENTTGPPSPV DRVNTALQRA QMKVCTLSNQ RVGRSLIKSK 801 850 ENSP00000388731/1-1259 DLLKQRYLFA KAGYPLRRSQ SLPTTLLSPV RVVSSVNVRL SPGKETRCSP ENSBTAP00000001241/1-1256 DLLKQRYLFA KAGYPLRRSQ SLPTTLLSPV RVVSSVNVRL SPGKETRCSP ENSTTRP00000014388/1-1253 DLLKQRYLFA KAGYPLRRSQ SLPTTLLSPV RVVSSVNVRL SPGKETRCSP bmy_04298T0/1-1234 DLLKQRYLFA KAGYPLRRSQ SLPTTLLSPV RVVSSVNVQL SPGKETRCSP BACU014055/1-1316 DLLKQRYLFA KAGYPLRRSQ SLPATLLSPV RVVSSVNVRL SPGKETRCSP 851 900 ENSP00000388731/1-1259 PSFTYKYTPE EEQELEKRVM EHDGQSLVKS TIFISPSSVK KEEAPQSEAP ENSBTAP00000001241/1-1256 PSFTYKYTQE EEQRLEKEVT EHDGQSSVKS TIFISPTSGK KEADAPSEVT ENSTTRP00000014388/1-1253 PSFTYKYTPE EEQKLEREAI EHDGQSLVKS TIFISPSFVK KEAAAQSEVN bmy_04298T0/1-1234 PSFTYKYTPE EEQKLEREAI EHDGQSLVKS TIFISPSFVK KAAATQSEVN BACU014055/1-1316 PSFTYKYTPE EEQKLEREAI EHDGQSLVKS TIFISPSFMK KEAAAQSEVN 901 950 ENSP00000388731/1-1259 RVEECHHGRT PTCSRLAPPP MSQSTCSLHS IHSEWQERPL CEHTRTLSTH ENSBTAP00000001241/1-1256 RLEECHQRRT PACSLPAPAP VSQSTCSLHS LHSEWQERHL CEHMRTLSTH ENSTTRP00000014388/1-1253 RLEECHQQRT PACSLCAPAP VSQSTCSLHS VPSEWQEGPL CEHMRTLSTH bmy_04298T0/1-1234 RLEESHQRRT AACSLCAPAP VSQSTCSLHS VHAERQEGPL CEHTRTLSTH BACU014055/1-1316 RLEECHQRRT PACSLYAPAP VSQSTCALHS VHSEWQEGPL CEHMRTLSTH 951 1000 ENSP00000388731/1-1259 SVPNISGATC SAFASPFGCP YSHRHATYPY RVCSVNPPSA IEMQLRRVLH ENSBTAP00000001241/1-1256 SVPSVAGAAC SAFPCPLGCP YSHRHAASPY RACSVNPPSA IEMQLRRVLH ENSTTRP00000014388/1-1253 SIPNISGTTC SAFTSPLGCP YSHRHAAYPH RVCSVNPPSA IEMQLRRVLH bmy_04298T0/1-1234 SVPNIPGTAC SAFTSPLGCP YSHRHAAYPY RVCSLNPPSA IEMQLRRVLH BACU014055/1-1316 SIPNIPGTAC SAFTSPLGCP YSHRHAAYPY RVCSLNPPSA IEMQLRRVLH 1001 1050 ENSP00000388731/1-1259 DIRNSLQNLS QYPMMRGPDP AAAPYSTQKS SVLPLYENTF QELQVMRRSL ENSBTAP00000001241/1-1256 DIRNSLQNLS QYPMMRGPDL AAAPYSTQKS SVLPLYENTF QELQVMRRSL ENSTTRP00000014388/1-1253 DIRNSLQNLS QXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_04298T0/1-1234 DIRNSLQNLS QHPVMRGPDL AAVPCSTQKS SVLPLYENTF QELQVMRRSL BACU014055/1-1316 DIRNSLQNLS QHPVMRGPDL AAVPCSTQKS SVLPLYENTF QELQVMRRSL 1051 1100 ENSP00000388731/1-1259 NLFRTQMMDL ELAMLRQQTM VYHHMTEEER FEVDQLQGLR NSVRMELQDL ENSBTAP00000001241/1-1256 NLFRTQMMDL ELAMLRQQTM VYHHMTEEER YEVDQLQSLR NSVRMELQDL ENSTTRP00000014388/1-1253 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXR NSVRMELQDL bmy_04298T0/1-1234 NLFRTQMMDL ELAVLRQQTM VYHHMTEDER YEVDQLQSLR NSVRMELQDL BACU014055/1-1316 NLFRTQMMDL ELAVLRQQTM VYHHMTEDER YEVDQLQSLR NSVRMELQDL 1101 1150 ENSP00000388731/1-1259 ELQLEERLLG LEEQLRAVRM PSPFRSSALM GMCGSRSADN LSCPSPLNVM ENSBTAP00000001241/1-1256 ELQLEERLLG LEEQLRPVHL PSAFRPSALM GMCGSRSADN LSCPSPLNVM ENSTTRP00000014388/1-1253 EMQL-ERLLG -EEQLHAVSV LA-FRSSELM GMCGSRSADN LSCPSPLNVM bmy_04298T0/1-1234 EMQLEERLLG LEEQLHAVSV PSPFRSSALM GMCGSRSADN LSCPSPLNVM BACU014055/1-1316 EMRLEERLLG LEEQLHAVSV PSPFRSSALM ---------- ---------- 1151 1200 ENSP00000388731/1-1259 EPVTELMQEQ SYLKSELGLG LGEMGFEIPP GESSESVFSQ ATSESSSVCS ENSBTAP00000001241/1-1256 EPVTELMREQ SYLKSELGLG HGEMGFEIPP GESSESVFSQ ATSESSSVCS ENSTTRP00000014388/1-1253 EPVSEKMREQ SYVKSELGMG LGEMG-EIPP GESLESVFSQ ATSESSSVCS bmy_04298T0/1-1234 EPVTELMREQ SYLRSELGLG LGEMGFEVPP GESLESVFSQ ATSESSSVCS BACU014055/1-1316 --VTELMREQ SYLRSELGLG LGEMGFEVPP GESLESVFSQ ATSESSSVCS 1201 1250 ENSP00000388731/1-1259 GPSHANRRTG VPSTASVGKS KTPLVARKKV FRASVALTPT APSRTGSVQT ENSBTAP00000001241/1-1256 GPSHASRRTG VPPIDSVGKP KTHLVPSKKL FRASVALTPT APSRTGSVQT ENSTTRP00000014388/1-1253 GPSHAN-RTG VPSSDSVGRP KTHLVPSKKV FRASVALTPT APSRTGSVQT bmy_04298T0/1-1234 GPSHAN-RPG VPSSDSVGRP KTHLVPSKKV FRASVALTPT APSRTGSGQT BACU014055/1-1316 GPSHAN-RTG VPSSDSVGRP KTHLVPSKKV FRASVALTPT APSRTGSVQT 1251 1300 ENSP00000388731/1-1259 PPDLESSEEV DAAEGAPEVV GPKSEVEEGH GKLPSMPAAE EMHKNVEQDE ENSBTAP00000001241/1-1256 PPDVESSEEA GATEETSEAV GPKSEVEEEQ GKVSLLPAAE EVHKNVEQDE ENSTTRP00000014388/1-1253 PPDMESSEEV FAAEEASEAV GPKSEVEKEH GRISLLPAAE EMHKNVEQDE bmy_04298T0/1-1234 PPDMESSEEV VAAEEASEAV GPKSEVEKEH GKISLSPAAE EMHKNVEQDE BACU014055/1-1316 PPDMESSEEV VAAEEGSEAV GPKSEVEKEH GKISLSPAAE EMHKNVEQDE 1301 1350 ENSP00000388731/1-1259 LQQVIREI-- --KESIVGEI RREIVSGLLA AVSSSKASNS KQDYH ENSBTAP00000001241/1-1256 LQQVIREVCV GPVSCVILEL SRIYTGGGVI CASEDTCC-- ----- ENSTTRP00000014388/1-1253 LQQVIREI-- --KESIVGEI RREIVSGLLA AVSSSKASNS KQDSH bmy_04298T0/1-1234 LQQVIREI-- --KESIVGEI RREIVSGLLA AVSSSKASNS KQDSH BACU014055/1-1316 LQQVIREI-- --KESIVGEI RREIVSGLLA AVSSSKASNS KQDSH