KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:13:41 2014 Check: 00 .. Name: ENSP00000389792/1-354 Len: 719 Check: 5893 Weight: 1.00 Name: ENSBTAP00000001262/1-312 Len: 719 Check: 7502 Weight: 1.00 Name: bmy_15484T0/1-620 Len: 719 Check: 6205 Weight: 1.00 Name: BACU008870/1-382 Len: 719 Check: 7842 Weight: 1.00 Name: ENSTTRP00000002018/1-350 Len: 719 Check: 3673 Weight: 1.00 // 1 50 ENSP00000389792/1-354 MAKTGAEDHR EALSQSSLSL LTEAMEVLQQ SSPEGTLDGN TVNPIYKYIL ENSBTAP00000001262/1-312 ----MTEDHK VVLCQSPLSP LTKVTDISQQ SNPEDTFNGD TIQSTYKYIS bmy_15484T0/1-620 ---------- ---------- ---------- ---------- ---------- BACU008870/1-382 ----MTEDHR AALSRSPLSP LTKATEVSQR SNPEDTFNGD TVHPIYKYIS ENSTTRP00000002018/1-350 ----MTEDHR AALSQSPLSP LTKATEVSQR SNPEDTFNGD TVHPIYKYIS 51 100 ENSP00000389792/1-354 NDLPREFMSS QAKAVIKTTD DYLQSQFGPN RLVHSAAVSE GSGLQDCSTH ENSBTAP00000001262/1-312 NGLPREFMSS QAKAVNKTTE EYLQPQFGPN RLLHSAAVSE GSGLQDCSTH bmy_15484T0/1-620 -------MSS QAKAVIKPTE DYLQPQFGPN RLLHSAAASE GSGLQDCSTH BACU008870/1-382 NDLPREFMSS QAKAVIKPTE DYLQPQFGPN RLLHSAAASE GSGLQDCSTH ENSTTRP00000002018/1-350 NDLPREFMSS QAKAVIKPTE DYLQPQFGPN RLLHSAAASE GSGLQDCSTH 101 150 ENSP00000389792/1-354 QTASDHSHDE ISDLDSYKSN SKNNSCSISA SKRNRPVSAP VGQLRVAEFS ENSBTAP00000001262/1-312 QTASDHSHDE ISDPDSYKSN SKNNSCFISA SKRNRPVSAP VGQLRVAEFS bmy_15484T0/1-620 QTASDHSHDE ISDPDSYKSN SKNNSFFISA SKRNRPVSAP VGQLRVAEFS BACU008870/1-382 QTASDHSHDE ISDPDSYKSN SKNNSFFISA SKRNRPVSAP ---------- ENSTTRP00000002018/1-350 QTASDHSHDE ISDPDSYKSN SKNNSFFISA SKRNRPVSAP VGQLRVAESS 151 200 ENSP00000389792/1-354 SLKFQSARNW QKLSQRHKLQ PRVIKVTAYK NGSRTVFARV TVPTITLLLE ENSBTAP00000001262/1-312 S-KFKWDQNW HRLSQRHKLQ PRLIRVTAYK NGSRTVFAKV TVPTITLLLE bmy_15484T0/1-620 SLKFKLDQDW HRLSQRYKLQ PRVIRVTAYK NGSRTVFAKV TVPTITLLLE BACU008870/1-382 ---------- ---------- ---------- ---------- -------LLE ENSTTRP00000002018/1-350 SLKFKLHQDW HRLSQRYKLQ PRLIRVTAYK NGSRTVFAKV TVPTITLLLE 201 250 ENSP00000389792/1-354 ECTEKLNLNM AARRVFLADG KEALEPEDIP HEADVYVSTG EPFLNPFKKI ENSBTAP00000001262/1-312 ECTEKLNLNT AARRVFLADG TEALEPEDIP READVYVSTG ESFLDPFKKI bmy_15484T0/1-620 ECTEKLNLNM AARRVFLADG TEALEPEDIP CEADVYVSTG EPFLDPFKKI BACU008870/1-382 ECTEKLNLNM AARRVFLADG TEALEPEDIP CEADVYVSTG EPFLDPFKKI ENSTTRP00000002018/1-350 ECTEKLNLIM AARRVFLADG TEALEPEDIP CEADVYVSTG EPFLDPFKKI 251 300 ENSP00000389792/1-354 K--------- ---------- ---------- ---------- ---------- ENSBTAP00000001262/1-312 K--------- ---------- ---------- ---------- ---------- bmy_15484T0/1-620 KDGINIILKM WPWERICFKR EIKVPRSKNI LLSMSYPGYI EVLAVLMIML BACU008870/1-382 K--------- ---------- ---------- ---------- ---------- ENSTTRP00000002018/1-350 K--------- ---------- ---------- ---------- ---------- 301 350 ENSP00000389792/1-354 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000001262/1-312 ---------- ---------- ---------- ---------- ---------- bmy_15484T0/1-620 LLGHGVEQVA DVPRLLRKEI KNSVDSENCL RTISRFTKNC EDVVNELFEK BACU008870/1-382 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002018/1-350 ---------- ---------- ---------- ---------- ---------- 351 400 ENSP00000389792/1-354 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000001262/1-312 ---------- ---------- ---------- ---------- ---------- bmy_15484T0/1-620 AFLKFSDSWA YSLGFIHSFL DLLLNSGTFC IFILSCISYS TIWLSVLSFI BACU008870/1-382 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002018/1-350 ---------- ---------- ---------- ---------- ---------- 401 450 ENSP00000389792/1-354 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000001262/1-312 ---------- ---------- ---------- ---------- ---------- bmy_15484T0/1-620 YPYYINRCGS EDIARDGPPH RHRKESLAKR NTGAGLVMML WNPLGVASKF BACU008870/1-382 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002018/1-350 ---------- ---------- ---------- ---------- ---------- 451 500 ENSP00000389792/1-354 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000001262/1-312 ---------- ---------- ---------- ---------- ---------- bmy_15484T0/1-620 KGGHEMINLS MFINKDLEIY STPSRPSFAK PFSLASFLLF LKKLYPLWSL BACU008870/1-382 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002018/1-350 ---------- ---------- ---------- ---------- ---------- 501 550 ENSP00000389792/1-354 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000001262/1-312 ---------- ---------- ---------- ---------- ---------- bmy_15484T0/1-620 VNIKVVEQPY LSSHWGEVGN KDEMMIYAGY QSRQLATAYV TVSGKLVVAF BACU008870/1-382 ---------- ---------- --EMMIYAGY QSRQLATAYV TVSGKLVVAF ENSTTRP00000002018/1-350 ---------- ---------- ---------- ---------- ---------- 551 600 ENSP00000389792/1-354 ---------- ------DHLL LIKKVTWTMN GLMLPTDIKR RKTKPVLSIR ENSBTAP00000001262/1-312 ---------- ------DHLL LMKKVTWTMN GLMLPTDVKR RKTKPVLSIR bmy_15484T0/1-620 QETSIYGWRL ASVYDIDHLL LMKKVTWTMN GLMLPTDVKI RKTKPVLSIR BACU008870/1-382 QETSIYGWRL ASVYDIDHLL LMKKVTWTMN GLMLPTDVKI RKTKPVLSVR ENSTTRP00000002018/1-350 ---------- ------DHLL LMKKVTWTMN GLMLPTDLKI RKTKPVLSIR 601 650 ENSP00000389792/1-354 MKKLTERTSV RILFFKNGMG QDGHEITVGK ETMKKVL--- --DTCTIRMN ENSBTAP00000001262/1-312 MQKLIEKTSA RILLLRMARG RMGM------ ---------- ---------- bmy_15484T0/1-620 MKKLTEKTSV RILFFKNGMG QDGHEITVGK ETMKKLFYNY IWNLKNFHNF BACU008870/1-382 MKKLTEKTSV RILFFKNGTG QDGHEITVGK ETMKKVL--- --DICTMRMN ENSTTRP00000002018/1-350 MKKLTEKTSV RILFFKNGTG QDGHEITVGK ETMKKVL--- --DICTMKMN 651 700 ENSP00000389792/1-354 LNLPARYFYD LYGRKIEDIS KGKH------ ---------- ---------- ENSBTAP00000001262/1-312 ---------- ---------- RLQWERKQ-- ---------- ---------- bmy_15484T0/1-620 YETPDK--IH AFKNEVKE-- RRQWNTGLGC R--------- ---------- BACU008870/1-382 LNSPARYLYD LYGRKIKDIS KGKWQRFCKL CDTISKGIYI ILFFLYTFKR ENSTTRP00000002018/1-350 LNSPARYLYD LYGRKIKDIS KEKF------ ---------- ---------- 701 750 ENSP00000389792/1-354 ---------- --------- ENSBTAP00000001262/1-312 ---------- --------- bmy_15484T0/1-620 ---------- --------- BACU008870/1-382 RRYKNQFNYN MSFLYEGKS ENSTTRP00000002018/1-350 ---------- ---------