KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:13:43 2014 Check: 00 .. Name: ENSP00000361597/1-227 Len: 388 Check: 1394 Weight: 1.00 Name: ENSBTAP00000001269/1-218 Len: 388 Check: 3816 Weight: 1.00 Name: ENSTTRP00000015163/1-200 Len: 388 Check: 1759 Weight: 1.00 Name: bmy_06257T0/1-380 Len: 388 Check: 2895 Weight: 1.00 Name: BACU011376/1-194 Len: 388 Check: 8226 Weight: 1.00 // 1 50 ENSP00000361597/1-227 MSYFRTPQTH PGPLPSGQGG AASPGLSLGL CSPVEPVVVA SGGTGPLSQK ENSBTAP00000001269/1-218 MSYFMSPQTQ PGLPSSGQGG AASPGSSLGL YSPIEPGMVA SGGQGPLSQK ENSTTRP00000015163/1-200 MSYFMSPQTH PGLPPSGQGG AASLGSSLGL YSPVEPVVVA SGGQGPLSQK bmy_06257T0/1-380 MSYFMSPQTH PGLPPSGQGG AASLGSSLGL YSPVEPVVVA SGGQGPLSQK BACU011376/1-194 MSYFMSPQTH PGLPPSSQGG AASLGSSLGL YSPVEPVVVA SGGQGPLSQK 51 100 ENSP00000361597/1-227 AEQVAPAAQA WGPALAMPQA RGCPGGTSWE TL-RKEYSRN CHKFPHVRQL ENSBTAP00000001269/1-218 AEQVTPVAQA WGPA------ ---PGGTGWE PP-RQEYNWY CHKFPAARQL ENSTTRP00000015163/1-200 AEQATPVL-- ------VPEA RGCPGGARWE PLQRKEYSRN CHKFPHARQP bmy_06257T0/1-380 AEQATPVAQA WGPALAVPEA RGCPGGASWE PLRRKEYSRY CHKFPHARQP BACU011376/1-194 AEQATPVAQA WGPALAVPEA RGCPGGASWE PLRRREYSRY CHKFPHARQP 101 150 ENSP00000361597/1-227 ESLGWDNGYS RSRAPDLGGP SRPRPLMLCG LSPRVLPVPS EAVGKEASSQ ENSBTAP00000001269/1-218 ENLGREDSCS RSRAPQLGGL SRPAPLLLCG LSPGAPLMPA EAGGKEATSQ ENSTTRP00000015163/1-200 ERLGWEDGCS RSRAPYLGSP SRPGPLLLCG L-------PS ETGGKEAGPQ bmy_06257T0/1-380 ESLGWEDGCS RSRAPYLGGP SRPGPL-LCG L-------PS EAGGKEAGSQ BACU011376/1-194 ESLGWEDGCS RSRAPYLGGP SRPGPL-LCG L-------PS EAGGKEAGSQ 151 200 ENSP00000361597/1-227 PDICILTLAM MIAGIPTVPV PGVREEDLIW AAQAFMMAHP EPEGAVEGAR ENSBTAP00000001269/1-218 PDICILTLAM MIAGIPTVPV PGLREEDLIR AAQAFMMAHP EPDGAVEGAQ ENSTTRP00000015163/1-200 PDICILTLAM MIAGIPTVPV PGLREEDLIR AAQAFMMAHL EPAGAVEGAR bmy_06257T0/1-380 PDICILTLAM MIAGIPTVPV PGLREEDLIR AAQAFMMAHP EPAGAVEGAR BACU011376/1-194 PDICILTLAM MIAGIPTVPV PGLREEDLIR AAQAFMMAHL EPAGAVEGAR 201 250 ENSP00000361597/1-227 WEQAHAHTAS GKMP------ ---------- LVRSKRGQ-- ---------- ENSBTAP00000001269/1-218 WAQAQTHIAS GPMA------ ---------- LARSRRGQ-- ---------- ENSTTRP00000015163/1-200 W--------- ---------- ---------- LVRSRRGQ-- ---------- bmy_06257T0/1-380 ADPAVGQLAQ GAVPPFKLLL TAVLQALTHL LCEERHGQVL IQGLTPLAAH BACU011376/1-194 W--------- ---------- ---------- L--------- ---------- 251 300 ENSP00000361597/1-227 ---------- -PP------- ---------- ---------- ---------- ENSBTAP00000001269/1-218 ---------- -PP------- ---------- ---------- ---------- ENSTTRP00000015163/1-200 ---------- -PP------- ---------- ---------- ---------- bmy_06257T0/1-380 DVTEAGSTAC RPPSWQHVWL EHLAAGTEHG EDVAAGQTEG LVKVAAAAGR BACU011376/1-194 ---------- ---------- ---------- ---------- ---------- 301 350 ENSP00000361597/1-227 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000001269/1-218 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015163/1-200 ---------- ---------- ---------- ---------- ---------- bmy_06257T0/1-380 GLGLHPMGVL QDLYVHLFGT RADEVHGFLD HGKLAQAELG GRPRADGIKG BACU011376/1-194 ---------- ---------- ---------- ---------- ---------- 351 400 ENSP00000361597/1-227 ---------- -----GSCL- ---------- -------- ENSBTAP00000001269/1-218 ---------- -----GSYL- ---------- -------- ENSTTRP00000015163/1-200 ---------- -----GSCL- ---------- -------- bmy_06257T0/1-380 VLDAGFYQLL HFRAFGAAIQ RGMIVRGTQA QAETRLVS BACU011376/1-194 ---------- ---------- ---------- --------