KEY:
    ENSP* - Homo sapiens (Human)
    ENSBTA* - Bos taurus (Cow)
    ENSTTR* - Tursiops truncatus (Dolphin)
    bmy_* - Balaena mysticetus (Bowhead whale)
    BACU* - Balaenoptera acutorostrata (Minke whale)

Copy from below the line for a valid .msf file.

----------------------------------------------------------------------------------
                
NoName   MSF: 4  Type: P  Thu May 15 16:13:55 2014  Check: 00 ..

 Name: ENSBTAP00000001324/1-263  Len:    263  Check:  3809  Weight:  1.00
 Name: bmy_18268T0/1-196         Len:    263  Check:  5063  Weight:  1.00
 Name: BACU019905/1-250          Len:    263  Check:  7611  Weight:  1.00
 Name: ENSTTRP00000011523/1-262  Len:    263  Check:  4531  Weight:  1.00

//


                          1                                                   50
ENSBTAP00000001324/1-263  MSGFSWGYGE RDGPVHWNEF FPIADGDQQS PIEIKTKEVR YDSSLRPLGI 
bmy_18268T0/1-196         MARFSWGYGE HN-------- ---------- ---------- ---------- 
BACU019905/1-250          ---------- --GPSHWNEF FPIADGDQQS PIEIKTKEVK YDSSLRPLSI 
ENSTTRP00000011523/1-262  MARFSWGYGE HNGPIHWNEF FPIADGDQQS PIEIKTKEVK YDSSLRPLSI 


                          51                                                 100
ENSBTAP00000001324/1-263  KYDASSAKII SNSGHSFNVD FDDTDDKSVL RGGPLTGSYR LRQFHLHWGS 
bmy_18268T0/1-196         ---------- ---------- --------VL RGGPLTGSYR LRQFHLHWGS 
BACU019905/1-250          KYDTSSAKII SNSGHSFNVD FDDTEDKSVL RGGPLTGSYR LRQFHLHWGS 
ENSTTRP00000011523/1-262  KYDTSSAKII SNSGHSFNVD FDDTEDKSVL RGGPLTGSYR LRQFHLHWGS 


                          101                                                150
ENSBTAP00000001324/1-263  TDDHGSEHVV DGVRYAAELH VVHWNSDKYP SFVEAAHEPD GLAVLGIFLQ 
bmy_18268T0/1-196         TDDHGSEHVV DGXRYAAELH VVHWNSEKYP SFVEAAHEPD GLAVLGVFLQ 
BACU019905/1-250          TDDHGSEHVV DGVRYAAELH VVHWNSDKYP SFVEAAHEPD GLAVLGVFLQ 
ENSTTRP00000011523/1-262  TDDHGSEHVV DGVRYAAELH VVHWNSDKYP SFVEAAHEPD GLAVLGVFLQ 


                          151                                                200
ENSBTAP00000001324/1-263  IGEHNPQLQK ITDILDSIKE KGKQTRFTNF DPVCLLPPCR DYWTYPGSLT 
bmy_18268T0/1-196         IGEHNPQLQK ITDILDSIKE KGKQTRFTNF DPLSLLPPCW DYWTYPGSLT 
BACU019905/1-250          IGEHNPQLQR ITDILDSIKE KGKQTRFTNF DPLSLLPPRW DYWTYPGSLT 
ENSTTRP00000011523/1-262  IGEHNPQLQK ITDILHSIKE KGKQTRFTNF DPLSLLPPRW DYWTYPGSLT 


                          201                                                250
ENSBTAP00000001324/1-263  VPPLLESVTW IILKQPINIS SQQQLAAFRT LLCSREGETA AFLLSNHRPP 
bmy_18268T0/1-196         VPPLLESVTW IVLKQPINIS S-QQLATFRT LLCTGEGKAA AFLLSNHRPP 
BACU019905/1-250          VPPLLESVTW IVLKQPINIS S-QQLATFRT LLCTGEGKAA AFLLSNHRPP 
ENSTTRP00000011523/1-262  VPPLLESVTW IVLKQPINIS S-QQLATFRT LLCTGEGKAA AFLLSNHRPP 


                          251                                                300
ENSBTAP00000001324/1-263  QPLKGRKVRA SFR 
bmy_18268T0/1-196         QPLKGRKVRA SFH 
BACU019905/1-250          QPLKDRKVRA SFH 
ENSTTRP00000011523/1-262  QPLKGRKVRA SFH