KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:13:55 2014 Check: 00 .. Name: bmy_10776T0/1-513 Len: 729 Check: 5554 Weight: 1.00 Name: ENSP00000342295/1-614 Len: 729 Check: 9437 Weight: 1.00 Name: ENSBTAP00000001325/1-569 Len: 729 Check: 2295 Weight: 1.00 Name: BACU016759/1-577 Len: 729 Check: 8488 Weight: 1.00 Name: ENSTTRP00000001005/1-606 Len: 729 Check: 2246 Weight: 1.00 // 1 50 bmy_10776T0/1-513 ---------- ---------- ---------- ---------- ---------- ENSP00000342295/1-614 MMRQATMDFS TPSVFDQQRG DSSEEVDLTM VYQAASNGDV NALTAVIRED ENSBTAP00000001325/1-569 -MRQATMDFS TPSVFDQQKG DSSEEVDLTM VYQAASNGDV SALTAVIRED BACU016759/1-577 ---------- ---------- ---------M VYQAASNGDV NALTAVIRED ENSTTRP00000001005/1-606 MMRQATMDFS TPSVFDQQKG DSSEEVDLTM VYQAASNGDV NALTAVIRED 51 100 bmy_10776T0/1-513 ---------- ---------- ---------- ---------- ---------- ENSP00000342295/1-614 PSILECCDSE GCTPLMHAVS GRQADTVKLL LKMGANINMQ DAYGRTSLCL ENSBTAP00000001325/1-569 PSILECCDSE GCTPLMHAVS GRQVDTVKLL LKMGASINTQ DAYGRTSLCL BACU016759/1-577 PSILECCDSE GCTPLMHAVS GRQVDTVKLL LKMGANINMQ DAYGRTSLCL ENSTTRP00000001005/1-606 PSILECCDSE GCTPLMHAVS GRQVDTVKLL LKMGANINMQ DAYGRTSLCL 101 150 bmy_10776T0/1-513 ---------- ---------- ---------- ---------- ---------- ENSP00000342295/1-614 ATYLGWLEGC VSLLRNGAKH NIPDKNGRLP LHAATAEPDM RLLTVLLQQS ENSBTAP00000001325/1-569 ATYLGWLEGC VSLLRNGAKH NIPDKNGRLP LHAATAEPDV RLLTVLVQQS BACU016759/1-577 ATYLGWLEGC VSLLRNGAKH NIPDKNGRLP LHAATAEPDV RLLTVLVQQS ENSTTRP00000001005/1-606 ATYLGWLESC VSLLRNGAKH NILDKNGRLP LHAATAEPDV RLLTVLLQQS 151 200 bmy_10776T0/1-513 ---------- ---------- ---------- ---------- ---------- ENSP00000342295/1-614 NISEINHQDN EGMTPLHWAA FHNQPQHTQM LLKKGADPTL VDKDFKTALH ENSBTAP00000001325/1-569 NLNEINHQDN E--------- ---------- ---------- ---------- BACU016759/1-577 NLNEINHQDS EGMTPLHWAA FHNRPQHTQM LLKKGADPTL VDKDFKTALH ENSTTRP00000001005/1-606 SLNEINQQDS EGMTPLHWAT FHNRPQHTQM LLKKGADPTV VDKDFKTALH 201 250 bmy_10776T0/1-513 ----SGNRIL CSIILSHHQG PSIINYDDES GKTCVHIAAA AGFSDIINEL ENSP00000342295/1-614 WAVQSGNRIL CSIILSHHQG PSIINYDDES GKTCVHIAAA AGFSDIIHEL ENSBTAP00000001325/1-569 ----SGNRIL CSIILSHHQG PSIINYDDES GKTCVHIAAA AGFCDIINEL BACU016759/1-577 WAVQSGNRIL CSIILSHHQG PSIINYDDES GKTCVHIAAA AGFSDIINEL ENSTTRP00000001005/1-606 WAVQSGNRIL CSIILSHHQG PSIINYDDES GKTCVHIAAA AGFSDIINEL 251 300 bmy_10776T0/1-513 ARFPECNLQA LDVDDRYKSL KVDLFLRADV ELEQFLHPAL CSCAFTLKLT ENSP00000342295/1-614 ARVPECNLQA LDVDDR---- ---------- ---------- ---------T ENSBTAP00000001325/1-569 ARVPECNLQA LDVDDR---- ---------- ---------- ---------T BACU016759/1-577 ARFPECNLQA LDVDDR---- ---------- ---------- ---------T ENSTTRP00000001005/1-606 ARFPECNLQA LDVDDR---- ---------- ---------- ---------T 301 350 bmy_10776T0/1-513 PLHWAAAAGK ADCVQSLLEL GIDSNLRDIS ESTPLAYALY CGHTACVKLL ENSP00000342295/1-614 PLHWAAAAGK AECVQSLLEL GMDSNLRDIN ESTPLAYALY CGHTACVKLL ENSBTAP00000001325/1-569 PLHWAAAAGK ADCVQSLLEL GMDSNLRDIN ESTPLAYALY CGHTDCVKLL BACU016759/1-577 PLHWAAAAGK ADCVQSLLEL GIDSNLRDIS ESTPLAYALY CSHTACVKLL ENSTTRP00000001005/1-606 PLHWAAAAGK ADCVQSLLEL GIDSNLRDIS ESTPLAYALY CGHTACVKLL 351 400 bmy_10776T0/1-513 SQESRGLRVS LDDLRQPAQV DGIEGGLLCG YCWCLHFLPS HSILVILYSH ENSP00000342295/1-614 SQES------ ---------- ---------- ---------- ---------- ENSBTAP00000001325/1-569 SQES------ ---------- ---------- ---------- ---------- BACU016759/1-577 SQES------ ---------- ---------- ---------- ---------- ENSTTRP00000001005/1-606 SQES------ ---------- ---------- ---------- ---------- 401 450 bmy_10776T0/1-513 RTEPTRPLPS QKSRPQKKEG RFSMLNQIFC RNKKEEQRAY QKDHSRDWHR ENSP00000342295/1-614 RTEPTRPPPS QSSRPQKKER RFNVLNQIFC KNKKEEQRAH QKDPSRDRYR ENSBTAP00000001325/1-569 RTEPPRPLPA QNSRPQKKEG RFSMLNQIFC KNRKEEQRAY QKDPSRDWHR BACU016759/1-577 RTEPTRPLPS QKSRPQKKEG RFSMLNQIFC RNKKEEQRAY QKDHSRDWHR ENSTTRP00000001005/1-606 RTEPTRPLPS QKSRPQKKEG RFSMLNQIFC RNKKEEQRAY QKDHCRDWHR 451 500 bmy_10776T0/1-513 GEPTSEVDDI ITTFDSNVDT NCQEQPGDRV AMVDFKKRTS ENSKYHLPEK ENSP00000342295/1-614 EEDTSEVNDI ITTFDSIVGT NCQEQPGDQV AMVEFKKKTS DNSKYLLPEK ENSBTAP00000001325/1-569 GEHTSEVDDI ITTFDSNVDT NCQEQPGEQV AMVDFKKRTS ENSKYHLPEK BACU016759/1-577 GEPTSEVDDI ITTFDSNVDT NCQEQPGGRV AMVEFKKRTS ENSKYHLPEK ENSTTRP00000001005/1-606 AEPTSEVDDI ITTFDSNMDT NCQEQPGDQV AMVDFKKRTS ENSKYHLPEK 501 550 bmy_10776T0/1-513 KPLAHKGLPP IRTQSLPPIT LGHNFLTASQ GATSHAGLSS GTHHAAQQSQ ENSP00000342295/1-614 KPLARKGLPP IRTQSLPPIT LGNNFLTASH RATSHAGLSS APHHMAQRSQ ENSBTAP00000001325/1-569 KPLARKGLPP IRTQSLPPIT LGHNFLTASQ GATSHAGLSS GTHHAAQRSQ BACU016759/1-577 KPLAHKGLPP IRTQSLPPIT LGHNFLTASQ GATSHAGLSS GTHHAAQQSQ ENSTTRP00000001005/1-606 KPLAHKGLPP IRTQSLPPIT LGHNFLTASQ GATSHAGLSS GTHHAAQQSQ 551 600 bmy_10776T0/1-513 KSRSEQDLLN NRTGCQVLLD N-------QV F-YKAWTVSS SDKLLDRLLT ENSP00000342295/1-614 KSRSEQDLLN NRTGCQMLLD NPWKSDSNQV FSYKVWTVSS SDKLLDRLLS ENSBTAP00000001325/1-569 KSRSEQDLLN NRTGCQALLD NPWKGDSHPV F-YKAWTMSS SDKLLDRLLT BACU016759/1-577 KSLSEQDLLN NRTGCQVLLD N-------QV F-YKAWTVSS SDKLLDRLLT ENSTTRP00000001005/1-606 KSRSEQDLLN NRTGCQVLLD N-------QV F-YKAWTVSS SDKLLDRLLT 601 650 bmy_10776T0/1-513 SRSSHQEVSW PPHLPHLHNP SSG----NVP ASFFLISDRF YTRNVSCSPG ENSP00000342295/1-614 VRPGHQEVSV PPHLRHLHNP SSGQNFQHLS PNRHKIRDLP FTRN------ ENSBTAP00000001325/1-569 SRSGHQEVSG PPHLPHLHNP SSGQNFQHLS PNRPKIRDLP YTRN------ BACU016759/1-577 SRSSHQEVSW PPHLPHLHNP SSGQNFQHLS PNRPKIWDLP FTRN------ ENSTTRP00000001005/1-606 GRSSHQEVSG PPHLPHLHNP SSGQNFQHLS PNRPKIWDLP FTRN------ 651 700 bmy_10776T0/1-513 LGTGVTDKIF SISPQTDLKS GIFLSPGTTW LPYQTKNFYL ENLYGQTECF ENSP00000342295/1-614 ---------- NLAPLPDQK- --FLSGEPLR -----TNRVL PAIPSQRRHS ENSBTAP00000001325/1-569 ---------- NLAPLPDQK- --FLSGEPLR -----TNRVL PAIPSQRGHS BACU016759/1-577 ---------- NLAPLPDQK- --FLSGEPLR -----TNRVL PAIPSQRGYS ENSTTRP00000001005/1-606 ---------- NLAPLPDQK- --FLSGEPLW -----TNRVL PAIPSQRGHS 701 750 bmy_10776T0/1-513 LLSQASGDTA HQLKRVKTLP VPPVMKINQ ENSP00000342295/1-614 TAAEESEHSA NPTSDEN--- --------- ENSBTAP00000001325/1-569 PPAEESENSA SSTNDEN--- --------- BACU016759/1-577 PPAEESENSA SSTNDEN--- --------- ENSTTRP00000001005/1-606 PPAEESENSA SSTNDEN--- ---------