KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:13:57 2014 Check: 00 .. Name: ENSTTRP00000005435/1-765 Len: 769 Check: 3831 Weight: 1.00 Name: ENSBTAP00000001343/1-769 Len: 769 Check: 8649 Weight: 1.00 Name: ENSP00000379836/1-765 Len: 769 Check: 8628 Weight: 1.00 Name: bmy_09378T0/1-695 Len: 769 Check: 8911 Weight: 1.00 Name: BACU006222/1-766 Len: 769 Check: 5746 Weight: 1.00 // 1 50 ENSTTRP00000005435/1-765 MEEKYGGDVL AGPGGGSG-G LGPVDVPSAR LTKYIVLLCV TKVLKAVGLF ENSBTAP00000001343/1-769 MEEKYGGDVL AGHGGGGGSG LGPVDVPSAR LTKYIVLLCF TKFLKAVGLF ENSP00000379836/1-765 MEEKYGGDVL AGPGGG-G-G LGPVDVPSAR LTKYIVLLCF TKFLKAVGLF bmy_09378T0/1-695 MEEKYGGDVL AGPGGGSG-G LGPVDVPSAR LTKYIVLLCV TKFLKAVGLF BACU006222/1-766 MEEKYGGDVL AGPGGGSG-G LGPVDVPSAR LTKYIVLLCV TKFLKAVGLF 51 100 ENSTTRP00000005435/1-765 ESYDLLKVVH IVQFIFILKL GTAFFMVLFQ KPFSSGKSIT KRQWIKIFKH ENSBTAP00000001343/1-769 ESYDLLKVVH VVQFIFILKL GTAFFMVLFQ KPFSSGKSIT KRQWIKIFKH ENSP00000379836/1-765 ESYDLLKAVH IVQFIFILKL GTAFFMVLFQ KPFSSGKTIT KHQWIKIFKH bmy_09378T0/1-695 ESYDLLKVVH IVQFIFILKL G--------- --------IP K--WIRIFKH BACU006222/1-766 ESYDLLKVVH IVQFIFILKL GTAFFMVLFQ KPFSSGKSIT KRQWIKIFKH 101 150 ENSTTRP00000005435/1-765 AVAGCIISLL WFFGLTLCGP LRTLLLFEHS DIVVISLLSV LFTSSGGGPA ENSBTAP00000001343/1-769 AMAGCVISLL WFFGLTLCGP LRTLLLFEHS DIVVISLLSV LFTSSGGGPA ENSP00000379836/1-765 AVAGCIISLL WFFGLTLCGP LRTLLLFEHS DIVVISLLSV LFTSSGGGPA bmy_09378T0/1-695 AVAGCIISLL WFFGLTLCGP LRTLLLFEHS DIVVISLLSV LFTSSGGGPA BACU006222/1-766 AVAGCIISLL WFFGLTLCGP LRTLLLFEHS DIVVISLLSV LFTSSGGGPA 151 200 ENSTTRP00000005435/1-765 KXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XEGHHDSALT HMLYTAIAFL ENSBTAP00000001343/1-769 KTRGAAFFII AVICLLLFDN DDLMAKMAEH PEGHHDSALT HMLYTAIAFL ENSP00000379836/1-765 KTRGAAFFII AVICLLLFDN DDLMAKMAEH PEGHHDSALT HMLYTAIAFL bmy_09378T0/1-695 KTRGAAFFII AVICLLLFDN DDLMAKMAEH PEGHHDSALT HMLYTAIAFL BACU006222/1-766 KTRGAAFFII AVICLLLFDN DDLMAKMAEH PEGHHDSALT HMLYTAIAFL 201 250 ENSTTRP00000005435/1-765 GVADHKGGVL LLVLALCCKV GFHTASRKLS IDVGGTKRLQ ALSHIVSVLL ENSBTAP00000001343/1-769 GVADHKGGVL LLVLALCCKV GFHTASRKLS IDVGGAKRLQ ALSQIISVLL ENSP00000379836/1-765 GVADHKGGVL LLVLALCCKV GFHTASRKLS VDVGGAKRLQ ALSHLVSVLL bmy_09378T0/1-695 GVADHKGGVL LLVLALCCKV GFHTASRKLS IDVGGTKRLQ ALSHLVSVLL BACU006222/1-766 GVADHKGGVL LLVLALCCKV GFHTASRKLS IDVGGTKRLQ ALSHLVSVLL 251 300 ENSTTRP00000005435/1-765 LCPWVIVLSV TTESKVESWF SLIMPFTTVV FFVMILDFYV DSICSVKMEV ENSBTAP00000001343/1-769 LCPWVIVLSV TTESKVDSWF SLIMPFSTVI FFVMILDFYV ESICSVKMEV ENSP00000379836/1-765 LCPWVIVLSV TTESKVESWF SLIMPFATVI FFVMILDFYV DSICSVKMEV bmy_09378T0/1-695 LCPWVIVLSV TTESKVESWF SLIMPFTTVI FFVMILDFYV DSICSVKMEV BACU006222/1-766 LCPWVIVLSV TTESKVESWF SLIMPFTTVI FFVMILDFYV DSICSVKMEV 301 350 ENSTTRP00000005435/1-765 SKCARYGSFP IFISALLFGN FWTHPITDQL RAINKAAHQE STEHVLSGGV ENSBTAP00000001343/1-769 SKCARYGSFP IFISALLFGK FWTHPIAGQL RAVDRAALQE GTEHVLSGGV ENSP00000379836/1-765 SKCARYGSFP IFISALLFGN FWTHPITDQL RAMNKAAHQE STEHVLSGGV bmy_09378T0/1-695 SKCARYGSFP IFISALLFGN FWTHPITDQL RAMNKAAHQE STEHVLSGGV BACU006222/1-766 SKCARYGSFP IFISALLFGN FWTHPITDQL RAMNKAAHQE STEHVLSGGV 351 400 ENSTTRP00000005435/1-765 VVSAIFFILS ANILSSPSKR GQKGTLIGYS PEGTPLYNFM GDAFQHSSQS ENSBTAP00000001343/1-769 VVSAVFFTLS ANILSSPSKK GQKGTLIGYS PEGTPLYNFM GDAFQHSSQS ENSP00000379836/1-765 VVSAIFFILS ANILSSPSKR GQKGTLIGYS PEGTPLYNFM GDAFQHSSQS bmy_09378T0/1-695 VVSAIFFILS ANILSSPSKR GQKGTLIGYS PEGTPLYNFM GDAFQHSSQS BACU006222/1-766 VVSAIFFILS ANILSSPSKR GQKGTLIGYS PEGTPLYNFM GDAFQHSSQS 401 450 ENSTTRP00000005435/1-765 VPRFIKESLK QILEENDSRQ IFYFLCLNLL FTFVELFYGV LTNSLGLISD ENSBTAP00000001343/1-769 IPRFIKESLK QILEENDSRQ IFYFLCLNLL FTFVELFYGV LTNSLGLISD ENSP00000379836/1-765 IPRFIKESLK QILEESDSRQ IFYFLCLNLL FTFVELFYGV LTNSLGLISD bmy_09378T0/1-695 IPRFIKESLK QILEENDSRQ IFYFLCLNLL FTFVELFYGV LTNSLGLISD BACU006222/1-766 IPRFIKESLK QILEENDSRQ IFYFLCLNLL FTFVELFYGV LTNSLGLISD 451 500 ENSTTRP00000005435/1-765 GFHMLFDCSA LVMGLFAALM SRWKATRIFS YGYGRIEILS GFINGLFLVV ENSBTAP00000001343/1-769 GFHMLFDCSA LVMGLFAALM SRWKATRIFS YGYGRIEILS GFINGLFLVV ENSP00000379836/1-765 GFHMLFDCSA LVMGLFAALM SRWKATRIFS YGYGRIEILS GFINGLFLIV bmy_09378T0/1-695 GFHMLFDCSA LVMGLFAALM SRWKATRIFS YGYGRIEILS GFINGLFLVV BACU006222/1-766 GFHMLFDCSA LVMGLFAALM SRWKATRIFS YGYGRIEILS GFINGLFLVV 501 550 ENSTTRP00000005435/1-765 IAFFVFMESV ARLIDPPELD THMLTPVSVG GLIVN-IGIC AFSHAHNHTH ENSBTAP00000001343/1-769 IAFFVFMESV ARLIDPPELD THMLTPVSVG GLIVNLIGIC AFSHAHNHSH ENSP00000379836/1-765 IAFFVFMESV ARLIDPPELD THMLTPVSVG GLIVNLIGIC AFSHAHSHAH bmy_09378T0/1-695 IAFFVFMESV ARLIDPPELD THMLTPVSVG GLIVNLIGIC AFSHAHNHTH BACU006222/1-766 IAFFVFMESV ARLIDPPELD THMLTPVSVG GLIVNLIGIC AFSHAHNHTH 551 600 ENSTTRP00000005435/1-765 GASQGSCHSS DHSHSHHVHG HSDHGHGH-- SHGSAGRGMN ANMRGVFLHV ENSBTAP00000001343/1-769 GASQGSCHSS DHSHSHHAHG HSDHGHGHGH SHGSAGRGMN ANMRGVFLHV ENSP00000379836/1-765 GASQGSCHSS DHSHSHHMHG HSDHGHGH-- SHGSAGGGMN ANMRGVFLHV bmy_09378T0/1-695 GASQGSCHSS DHSHSHHVHG HSDHGHGH-- SHGSAGRGMN ANMR------ BACU006222/1-766 GASQGSCHSS DHSHSHHVHG HSDHGHGH-- SHGSAGRGMN ANMRGVFLHV 601 650 ENSTTRP00000005435/1-765 LADTLGSIGV IVSTILIEQF GWFIADPLCS LFIAILIFLS VVPLIKDACQ ENSBTAP00000001343/1-769 LADTLGSIGV IVSTILIEQF GWFIADPLCS LFIAVLIFLS VVPLIKDACQ ENSP00000379836/1-765 LADTLGSIGV IVSTVLIEQF GWFIADPLCS LFIAILIFLS VVPLIKDACQ bmy_09378T0/1-695 ---------- ---------- ---------- ---------- ------DACQ BACU006222/1-766 LADTLGSIGV IVSTILIEQF GWFIADPLCS LFIAILIFLS VVPLIKDACQ 651 700 ENSTTRP00000005435/1-765 VLLLRLPPEY EKELHIALEK XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000001343/1-769 VLLLRLPPEY EKELHIALEK LQKIEGLISY RDPHFWRHSA SIVAGTIHIQ ENSP00000379836/1-765 VLLLRLPPEY EKELHIALEK IQKIEGLISY RDPHFWRHSA SIVAGTIHIQ bmy_09378T0/1-695 VLLLRLPPEY EKELHIALEK LQKIEGLISY RDPHFWRHSA SIVAGTIHIQ BACU006222/1-766 VLLLRLPPEY EKELHIALEK LQKIEGLISY RDPHFWRHSA SIVAGTIHIQ 701 750 ENSTTRP00000005435/1-765 XXXXXXXXXX XXXVTGILKD AGVNNLTIQV EKEAYFQHMS GLSTGFHDVL ENSBTAP00000001343/1-769 VTSDVLEQRI VQQVTGILKD AGVNNLTIQV EKEAYFQHMS GLSTGFHDVL ENSP00000379836/1-765 VTSDVLEQRI VQQVTGILKD AGVNNLTIQV EKEAYFQHMS GLSTGFHDVL bmy_09378T0/1-695 VTSDALEQRI VQQVTGILKD AGVNNLTIQV EKEAYFQHMS GLSTGFHDVL BACU006222/1-766 VTSDVLEQRI VQQVTGILKD AGVNNLTIQV EKEAYFQHMS GLSTGFHDVL 751 800 ENSTTRP00000005435/1-765 AMTKQMESMK YYKDGTYIM ENSBTAP00000001343/1-769 TMTKQMESMK YYKDGTYIM ENSP00000379836/1-765 AMTKQMESMK YCKDGTYIM bmy_09378T0/1-695 AMTKQMESMK YYKDGTYIM BACU006222/1-766 AMTKQMESMK YYKDGTYIM