KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:14:00 2014 Check: 00 .. Name: bmy_17038T0/1-656 Len: 849 Check: 4497 Weight: 1.00 Name: ENSP00000311005/1-816 Len: 849 Check: 7067 Weight: 1.00 Name: BACU005253/1-740 Len: 849 Check: 5898 Weight: 1.00 Name: ENSBTAP00000001347/1-781 Len: 849 Check: 4280 Weight: 1.00 // 1 50 bmy_17038T0/1-656 MAEPLKKDDG EDGSGEPPGP GKAEPTGPAA SVAAKNLALL KARSFDVTFD ENSP00000311005/1-816 MAEPLKEEDG EDGSAEPPGP VKAEPAHTAA SVAAKNLALL KARSFDVTFD BACU005253/1-740 MAEPLKEDDG EDGSGEPPGP GKAEPTGPAA SVAAKNLALL KARSFDVTFD ENSBTAP00000001347/1-781 MAEPLKEDDG EDGSGEPPGP VKAEPAGTAA SVAAKNLALL KARSFDVTFD 51 100 bmy_17038T0/1-656 VGDEYEIIET IGNGAYGVVS SARRRLTGQQ VAIKKIPNAF DVVTNAKRTL ENSP00000311005/1-816 VGDEYEIIET IGNGAYGVVS SARRRLTGQQ VAIKKIPNAF DVVTNAKRTL BACU005253/1-740 VGDEYEIIET IGNGAYGVVS SARRRLTGQQ VAIKKIPNAF DVVTNAKRTL ENSBTAP00000001347/1-781 VGDEYEIIET IGNGAYGVVS SARRRLTGQQ VAIKKIPNAF DVVTNAKRTL 101 150 bmy_17038T0/1-656 RELKILKHFK HDNIIAIKDI LRPTVPYGEF KSVYVVLDLM ESDLHQIIHS ENSP00000311005/1-816 RELKILKHFK HDNIIAIKDI LRPTVPYGEF KSVYVVLDLM ESDLHQIIHS BACU005253/1-740 RELKILKHFK HDNIIAIKDI LRPTVPYGEF KSVYVVLDLM ESDLHQIIHS ENSBTAP00000001347/1-781 RELKILKHFK HDNIIAIKDI LRPTVPYGEF KSVYVVLDLM ESDLHQIIHS 151 200 bmy_17038T0/1-656 SQPLTLEHVR YFLYQLLRGL KYMHSAQVIH RDLKPSNLLV NENCELKIGD ENSP00000311005/1-816 SQPLTLEHVR YFLYQLLRGL KYMHSAQVIH RDLKPSNLLV NENCELKIGD BACU005253/1-740 SQPLTLEHVR YFLYQLLRGL KYMHSAQVIH RDLKPSNLLV NENCELKIGD ENSBTAP00000001347/1-781 SQPLTLEHVR YFLYQLLRGL KYMHSAQVIH RDLKPSNLLV NENCELKIGD 201 250 bmy_17038T0/1-656 FGMARGLCTS PAEHQYFMTE YVATRWYRAP ELMLSLHEYT QAIDLWSVGC ENSP00000311005/1-816 FGMARGLCTS PAEHQYFMTE YVATRWYRAP ELMLSLHEYT QAIDLWSVGC BACU005253/1-740 FGMARGLCTS PAEHQYFMTE YVATRWYRAP ELMLSLHEYT QAIDLWSVGC ENSBTAP00000001347/1-781 FGMARGLCTS PAEHQYFMTE YVATRWYRAP ELMLSLHEYT QAIDLWSVGC 251 300 bmy_17038T0/1-656 IFGEMLARRQ LFPGKNYVHQ LQLIMMVLGT PSPAVIQAVG AERVRAYIQS ENSP00000311005/1-816 IFGEMLARRQ LFPGKNYVHQ LQLIMMVLGT PSPAVIQAVG AERVRAYIQS BACU005253/1-740 IFGEMLARRQ LFPGKNYVHQ LQLIMMVLGT PSPAVIQAVG AERVRAYIQS ENSBTAP00000001347/1-781 IFGEMLARRQ LFPGKNYVHQ LQLIMTVLGT PSPAVIQAVG AERVRAYIQS 301 350 bmy_17038T0/1-656 LPPRQPVPWE TVYPGADRQA LSLLGRMLRF EPSARISAAA ALRHPFLAKY ENSP00000311005/1-816 LPPRQPVPWE TVYPGADRQA LSLLGRMLRF EPSARISAAA ALRHPFLAKY BACU005253/1-740 LPPRQPVPWE TVYPGADRQA LSLLGRMLRF EPSARISAAA ALRHPFLAKY ENSBTAP00000001347/1-781 LPPRQPVPWE TVYPGADRQA LSLLGRMLRF EPSARVSAAA ALRHPFLAKY 351 400 bmy_17038T0/1-656 HDPDDEPDCA PPFDFAFDRE ALTRERIKEA IVAEIEDFHA RREGIRQQIR ENSP00000311005/1-816 HDPDDEPDCA PPFDFAFDRE ALTRERIKEA IVAEIEDFHA RREGIRQQIR BACU005253/1-740 HDPDDEPDCA PPFDFAFDRE ALTRERIKEA IVAEIEDFHA RREGIRQQIR ENSBTAP00000001347/1-781 HDPDDEPDCA PPFDFAFDRE ALTRERIKEA IVAEIEDFHA RREGIRQQIR 401 450 bmy_17038T0/1-656 FQPSLQPVAS EPSCPDVEMP SPWAPSGDCA MESPPPAPLP CPGPAPDTID ENSP00000311005/1-816 FQPSLQPVAS EPGCPDVEMP SPWAPSGDCA MESPPPAPPP CPGPAPDTID BACU005253/1-740 FQPSLQPVAS EPGCPDVEMP SPWAPSGDCA MESPPPAPLP CPGPAPDTID ENSBTAP00000001347/1-781 FQPSLQPVAS EPGCPDVEMP SPWAPSGDCA MESPPPAPLP CPGPAPDTID 451 500 bmy_17038T0/1-656 LTLQPPPPAS EPAPPKREGA ISDNTKAALK AALLKSLRSR LR-------- ENSP00000311005/1-816 LTLQPPPPVS EPAPPKKDGA ISDNTKAALK AALLKSLRSR LR-------- BACU005253/1-740 LTLQPPPPAS EPAPPKREGA ISDNTKAALK AALLKSLRSR LRGAWQRPRL ENSBTAP00000001347/1-781 LTLQPPPPAS EPAPPKKEGA ISDNTKAALK AALLKSLRSR LR-------- 501 550 bmy_17038T0/1-656 ---------- ---------- ----DGPSAP LEAPEPRKPV TAQERQRERE ENSP00000311005/1-816 ---------- ---------- ----DGPSAP LEAPEPRKPV TAQERQRERE BACU005253/1-740 AGEKEAEGPQ AWTGSYLHPP VFSADGPSAP LEAPEPRKPV TAQERQRERE ENSBTAP00000001347/1-781 ---------- ---------- ----DGPSAP LEAPEPRKPV TAQERQRERE 551 600 bmy_17038T0/1-656 EKRRRRQERA KEREKRRQER ERKERGAGAS GGPSADPLAG LVLSDNDRSL ENSP00000311005/1-816 EKRRRRQERA KEREKRRQER ERKERGAGAS GGPSTDPLAG LVLSDNDRSL BACU005253/1-740 EKRRRRQERA KEREKRRQER ERKERGAGAS GGPSADPLAG LSLG------ ENSBTAP00000001347/1-781 EKRRRRQERA KEREKRRQER ERKERGAGVS GGPSADPLAG LVLSDNDRSL 601 650 bmy_17038T0/1-656 LERWTRMARP ---------- ---------- ---------- ---------- ENSP00000311005/1-816 LERWTRMARP AAPALTSVPA PAPAPTPTPT PVQPTSPPPG PVAQPTGPQP BACU005253/1-740 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000001347/1-781 LERWTRMAQP ---------- ----PAPAPA TARPPSPPAG PATQPT---- 651 700 bmy_17038T0/1-656 ---------- ---------- ---------- ---------- -----PAPXX ENSP00000311005/1-816 QSAGSTSGPV PQPACPPPGP APHPTGPPGP IPVPAPPQIA TSTSLLAAQS BACU005253/1-740 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000001347/1-781 -------GPL PQPACPPPAP AAG------- ---PAAPQTT AASGLLAPQP 701 750 bmy_17038T0/1-656 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX APRRSLPARP LGLRLLHPRL ENSP00000311005/1-816 LVPPPGLPGS STPGVLPYFP PGLPPPDAGG APQSSMSESP -DVNLVTQQL BACU005253/1-740 --PPPGLPGP SALSVLPFFP SGPPPPDPGG APQPSTSESP -DVTLVTQQL ENSBTAP00000001347/1-781 LVPPPGLPGP SALSVLPYFP SGPPPPDPGG APQPSTSESP -DVTLVTQQL 751 800 bmy_17038T0/1-656 LLPPASWP-- PSRWGHPLGC ---------- ---------- ---------- ENSP00000311005/1-816 SKSQVEDPLP PVFSGTPKGS GAGYGVGFDL EEFLNQSFDM GVADGPQDGQ BACU005253/1-740 SKSQVEDPLP PVFSGTPKGS GAGYGVGFDL EEFLNQSFDM GVADGPQDGQ ENSBTAP00000001347/1-781 SKSQVEDPLP PVFSGTPKGS GAGYGVGFDL EEFLNQSFDM GVADGPQDGQ 801 850 bmy_17038T0/1-656 ---------- ---------- ---------- ---------L APVP----- ENSP00000311005/1-816 ADSASLSASL LADWLEGHGM NPADIESLQR EIQMDSPMLL ADLPDLQDP BACU005253/1-740 ADSASLSASL LADWLEGHGI NPADIESLQR EIQMGSPMLL ADLPDLQEP ENSBTAP00000001347/1-781 ADSASLSASL LADWLEGHGM NPADIESLQR EIQMDSPMLL ADLPDLQEP